ci: Build manual preview on PRs

Not as convenient as a deploy preview, but better than nothing.

Link: https://github.com/orgs/community/discussions/7730

.dir-locals.el

@@ -1,4 +1,16 @@
-;;; Directory Local Variables
-;;; For more information see (info "(emacs) Directory Variables")
-
-((emacs-lisp-mode . ((eval . (require 'org-roam-dev)))))
+((emacs-lisp-mode
+  (fill-column . 110)
+  (indent-tabs-mode . nil)
+  (elisp-lint-ignored-validators . ("byte-compile" "package-lint"))
+  (elisp-lint-indent-specs . ((describe . 1)
+                              (it . 1)
+                              (thread-first . 0)
+                              (cl-flet . 1)
+                              (cl-flet* . 1)
+                              (org-element-map . defun)
+                              (org-roam-dolist-with-progress . 2)
+                              (org-roam-with-temp-buffer . 1)
+                              (org-with-point-at . 1)
+                              (magit-insert-section . defun)
+                              (magit-section-case . 0)
+                              (org-roam-with-file . 2)))))

.github/FUNDING.yml

@@ -1,6 +1,6 @@
 # These are supported funding model platforms
 
-github: [jethrokuan, zaeph]
+github: [jethrokuan]
 patreon: # Replace with a single Patreon username
 open_collective: # Replace with a single Open Collective username
 ko_fi: # Replace with a single Ko-fi username

.github/ISSUE_TEMPLATE/bug_report.md

@@ -39,5 +39,3 @@ Example:
 ### Environment
 
 <!-- Please M-x org-roam-diagnostics and paste results here -->
-
-- Org-roam commit: https://github.com/jethrokuan/org-roam/commit/commithashhere

.github/workflows/docs.yml

@@ -1,31 +1,28 @@
+---
 # * docs.yml --- Build the documentation and publish to Github Pages
 
-name: "Docs"
+name: Docs
 on:
   push:
     branches:
-      - master
+      - main
 
 jobs:
   build:
     runs-on: ubuntu-latest
-    strategy:
-      fail-fast: true
     steps:
-    - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-    - name: Install deps
-      run: |
-        sudo apt-get install texinfo
+      - name: Install deps
+        run: sudo apt install texinfo
 
-    - name: Build docs
-      continue-on-error: false
-      run: make html
+      - name: Build docs
+        run: make html
 
-    - name: Deploy 🚀
-      uses: JamesIves/github-pages-deploy-action@releases/v3
-      with:
-        ACCESS_TOKEN: ${{ secrets.ACCESS_TOKEN }}
-        BRANCH: gh-pages # The branch the action should deploy to.
-        FOLDER: doc # The folder the action should deploy.
-        CLEAN: true
+      - name: Deploy 🚀
+        uses: JamesIves/github-pages-deploy-action@releases/v4
+        with:
+          token: ${{ secrets.ACCESS_TOKEN }}
+          branch: gh-pages # The branch the action should deploy to.
+          folder: doc
+          clean: true

.github/workflows/stale.yml

@@ -1,19 +0,0 @@
-name: Mark stale issues and pull requests
-
-on:
-  schedule:
-  - cron: "0 0 * * *"
-
-jobs:
-  stale:
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/stale@v1
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-issue-message: 'Stale issue message'
-        stale-pr-message: 'Stale pull request message'
-        stale-issue-label: 'no-issue-activity'
-        stale-pr-label: 'no-pr-activity'

.github/workflows/test.yml

@@ -1,7 +1,4 @@
-# * test.yml --- Test Emacs packages using makem.sh on GitHub Actions
-
-# https://github.com/alphapapa/makem.sh
-
+---
 # Based on Steve Purcell's examples at
 # <https://github.com/purcell/setup-emacs/blob/master/.github/workflows/test.yml>,
 # <https://github.com/purcell/package-lint/blob/master/.github/workflows/test.yml>.
@@ -23,44 +20,64 @@
 
 # * Code:
 
-name: "CI"
+name: CI
 on:
   pull_request:
   push:
     branches:
-      - master
+      - main
 
 jobs:
   build:
     runs-on: ubuntu-latest
     strategy:
-      fail-fast: false
       matrix:
         emacs_version:
+          # REVIEW: we do not yet have the bootstrapping in place to test
+          #         versions of emacs without built-in sqlite (pre 29.1)
+          # - 27.2
+          # - 28.2
+          - 29.4
           - snapshot
     steps:
-    - uses: purcell/setup-emacs@master
-      with:
-        version: ${{ matrix.emacs_version }}
+      - uses: purcell/setup-emacs@master
+        with:
+          version: ${{ matrix.emacs_version }}
 
-    - uses: actions/checkout@v2
+      - name: Install Eldev
+        uses: emacs-eldev/setup-eldev@v1
 
-    - name: Initialize sandbox
-      run: |
-        SANDBOX_DIR=$(mktemp -d) || exit 1
-        echo ::set-env name=SANDBOX_DIR::$SANDBOX_DIR
-        ./makem.sh -vv --sandbox $SANDBOX_DIR --install-deps --install-linters
+      - uses: actions/checkout@v4
 
-    # The "all" rule is not used, because it treats compilation warnings
-    # as failures, so linting and testing are run as separate steps.
+      - name: Install dependencies
+        run: make prepare
 
-    - name: Lint
-      continue-on-error: false
-      run: ./makem.sh -vv --sandbox $SANDBOX_DIR lint
+      - name: Lint
+        run: make lint
 
-    - name: Test
-      if: always()  # Run test even if linting fails.
-      run: ./makem.sh -vv --sandbox $SANDBOX_DIR test
+      - name: Test
+        run: make test
+
+  docs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install deps
+        run: sudo apt install texinfo
+
+      - name: Build docs
+        run: make html
+
+      - name: Upload
+        uses: actions/upload-artifact@v4
+        with:
+          name: Docs
+          if-no-files-found: error
+          # TODO: optimize images
+          path: |
+            doc/
+            !doc/images/
 
 # Local Variables:
 # eval: (outline-minor-mode)

.github/workflows/tidy-issues.yml

@@ -0,0 +1,93 @@
+name: 'Manage stale/dormant issues and PRs'
+
+on:
+  schedule:
+    - cron: '0 1 * * *'  # Daily at 1 AM UTC
+  workflow_dispatch:  # Allow this to be run manually
+    inputs:
+      dry_run:
+        description: 'Dry run: Show what would happen without making changes'
+        required: false
+        default: 'false'
+        type: boolean
+
+jobs:
+  stale:
+    runs-on: ubuntu-latest
+    steps:
+      # Handle stale issues/PRs
+      - name: Mark/close stale issues and PRs
+        uses: actions/stale@v9
+        with:
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+
+          # Dry run setting
+          debug-only: ${{ github.event.inputs.dry_run == 'true' }}
+
+          # Messages
+          stale-issue-message: |
+            📅 **Stale Issue Notice**
+
+            This issue has been automatically marked as stale because it has not had recent activity for **6 months**.
+
+            **⏰ This issue will be closed in 2 weeks** if no further activity occurs.
+
+            **To keep this issue open:**
+            - Comment on this issue
+            - Reference it in a commit or PR
+            - Add new information or updates
+
+            Thank you for your contributions to org-roam! 🙏
+
+          close-issue-message: |
+            🔒 **Issue Automatically Closed**
+
+            This issue was automatically closed due to **6 months of inactivity** followed by 2 weeks notice.
+
+            **To reopen:**
+            - If still relevant, comment below and we'll reopen
+            - Or create a new issue with updated information
+
+            If this issue is not reopened in 2 weeks, it will be locked.
+            
+            This helps keep our issue tracker focused and manageable.
+
+          stale-pr-message: |
+            📅 **Stale Pull Request Notice**
+
+            This pull request has been automatically marked as stale because it has not had recent activity for **6 months**.
+
+            **⏰ This PR will be closed in 2 weeks** if no further activity occurs.
+
+            **To keep this PR open:**
+            - Push new commits
+            - Comment with updates
+            - Rebase on latest main branch
+
+            Thank you for your contributions to org-roam! 🙏
+
+          close-pr-message: |
+            🔒 **Pull Request Automatically Closed**
+
+            This pull request was automatically closed due to **6 months of inactivity** followed by 2 weeks notice.
+
+          # Timing (6 months + 2 weeks)
+          days-before-stale: 182  # ~6 months
+          days-before-close: 14   # 2 weeks notice
+
+          # Performance
+          operations-per-run: 1000
+
+      # Show dry run summary
+      - name: Dry run summary
+        if: github.event.inputs.dry_run == 'true'
+        run: |
+          echo "🧪 DRY RUN COMPLETED"
+          echo "This was a dry run - no actual changes were made."
+          echo "Check the action logs above to see what would have happened."
+          echo ""
+          echo "To run for real:"
+          echo "1. Go to Actions tab"
+          echo "2. Click 'Run workflow'"
+          echo "3. Leave 'Dry run mode' unchecked"
+          echo "4. Click 'Run workflow'"

.gitignore

@@ -12,4 +12,5 @@
 /doc/mimetype
 /doc/stats/
 /config.mk
-/doc/manual/
+/doc/manual.html
+/.eldev/

.readthedocs.yml

@@ -1,8 +0,0 @@
-version: 2
-mkdocs:
- configuration: mkdocs.yml
-formats: all
-python:
-  version: 3.7
-  install:
-    - requirements: doc/requirements.txt

BACKERS.md

@@ -0,0 +1,8 @@
+# Backers
+
+Many thanks to the following backers, your contributions are greatly appreciated!
+
+- Nathan Tran
+- Burke Libbey
+- forkrul
+- Andreas Stuhlmüller

CHANGELOG.md

@@ -1,11 +1,374 @@
 # Changelog
 
-## 1.1.1 (18-05-2020)
+## 2.3.1 (2025-06-26)
+
+* (fix): Use correct type specifications to suppress warnings by @okomestudio in https://github.com/org-roam/org-roam/pull/2522
+* perf: suppress extra org features in the temp buffer by @dustinfarris in https://github.com/org-roam/org-roam/pull/2524
+
+## 2.3.0 (2025-05-24)
+
+* (perf)node-read: filter before map to candidate by @russmatney in https://github.com/org-roam/org-roam/pull/2168
+* (chore): remove extraneous changelog line by @jethrokuan in https://github.com/org-roam/org-roam/pull/2172
+* (fix)org-roam-file-p: don't exclude org-roam-directory by @toregilhk in https://github.com/org-roam/org-roam/pull/2178
+* (chore) fix version numbers by @jethrokuan in https://github.com/org-roam/org-roam/pull/2182
+* (fix) org-roam-file-p handle opening a buffer with no path by @jethrokuan in https://github.com/org-roam/org-roam/pull/2185
+* (fix)db: update atime on file access by @jethrokuan in https://github.com/org-roam/org-roam/pull/2174
+* Fix org-roam-extract-subtree by @ralfdoering in https://github.com/org-roam/org-roam/pull/2191
+* (node): fix org-roam-node-at-point check by @jethrokuan in https://github.com/org-roam/org-roam/pull/2195
+* (chore): reapply #2178 by @jethrokuan in https://github.com/org-roam/org-roam/pull/2197
+* Solved issue #2192 (Respect blank lines in capture templates) by @alopezrivera in https://github.com/org-roam/org-roam/pull/2203
+* (chore)ci: /s/master/main by @jethrokuan in https://github.com/org-roam/org-roam/pull/2204
+* support custom minibuffer matching function by @cuttlefisch in https://github.com/org-roam/org-roam/pull/2177
+* (db)fix: org-roam-db-connector group by @jethrokuan in https://github.com/org-roam/org-roam/pull/2209
+* ensure unique candidates in `org-roam-ref-find` by @bdarcus in https://github.com/org-roam/org-roam/pull/2208
+* (db)fix: FOREIGN KEY error in narrowed buffer by @psii in https://github.com/org-roam/org-roam/pull/2215
+* (feat): org-roam-property-* code duplication removed (#2217) by @clanghans in https://github.com/org-roam/org-roam/pull/2218
+* (db)fix: file modification detection failing in some edge cases by @kisaragi-hiu in https://github.com/org-roam/org-roam/pull/2221
+* (fix): autoload org-roam-list-files by @jethrokuan in https://github.com/org-roam/org-roam/pull/2226
+* (fix): links not displayed properly in org-roam-buffer by @ntharim in https://github.com/org-roam/org-roam/pull/2236
+* (fix): remove use of deprecated org-font-lock-ensure by @jethrokuan in https://github.com/org-roam/org-roam/pull/2238
+* was missing the FULL parameter to `org-end-of-meta-data` - fixes #2242 by @jmay in https://github.com/org-roam/org-roam/pull/2246
+* (Docs): Fixed typos in the docs by @hnvy in https://github.com/org-roam/org-roam/pull/2256
+* Fix space chars in roam refs by @hwiorn in https://github.com/org-roam/org-roam/pull/2285
+* org-roam-tag-add: use tags separator as crm-separator by @Hugo-Heagren in https://github.com/org-roam/org-roam/pull/2282
+* Support multi-line org titles by @FelixBrendel in https://github.com/org-roam/org-roam/pull/2264
+* (Docs): orgmode.org/elpa has been shut down by @aviad in https://github.com/org-roam/org-roam/pull/2258
+* Minor typo in the commented text of the definition of `org-roam-refile` by @apc in https://github.com/org-roam/org-roam/pull/2263
+* fix outline of link in properties by @bhuztez in https://github.com/org-roam/org-roam/pull/2230
+* (fix): update `org-roam-unlinked-references-section` check by @Elilif in https://github.com/org-roam/org-roam/pull/2254
+* Add support for filtering backlinks. by @swflint in https://github.com/org-roam/org-roam/pull/2247
+* (docs): update documentation on database-connectors by @jethrokuan in https://github.com/org-roam/org-roam/pull/2298
+* (db): default to sqlite-builtin when possible by @jethrokuan in https://github.com/org-roam/org-roam/pull/2299
+* don't complete org-roam nodes in source blocks by @ParetoOptimalDev in https://github.com/org-roam/org-roam/pull/2292
+* (core): add org-roam-node-category by @jethrokuan in https://github.com/org-roam/org-roam/pull/2300
+* add discoverability support for age encrypted org files by @anticomputer in https://github.com/org-roam/org-roam/pull/2302
+* (minor): fix lints on main by @jethrokuan in https://github.com/org-roam/org-roam/pull/2320
+* utils: descendant-of-p: Defend against nils by @qzdl in https://github.com/org-roam/org-roam/pull/2319
+* Add customisable function for prompting when adding refs by @Hugo-Heagren in https://github.com/org-roam/org-roam/pull/2317
+* Fix org-fold-core-style in org-roam-buffer by @hwiorn in https://github.com/org-roam/org-roam/pull/2325
+* depend on snapshot of emacsql by @jethrokuan in https://github.com/org-roam/org-roam/pull/2327
+* (node): org-roam-node-at-point: don't error in non-org buffers by @Hugo-Heagren in https://github.com/org-roam/org-roam/pull/2329
+* (node) add optional NOCASE parameter to org-roam-node-from-title-or-alias by @nuthub in https://github.com/org-roam/org-roam/pull/2403
+* (docs): update org-protocol instructions by @benthamite in https://github.com/org-roam/org-roam/pull/2401
+* Fix some typos by @feltcat in https://github.com/org-roam/org-roam/pull/2430
+* (docs): fix name of my-org-roam-show-backlink-p by @Delapouite in https://github.com/org-roam/org-roam/pull/2447
+* Link Martin Edström's knowledge base by @meedstrom in https://github.com/org-roam/org-roam/pull/2394
+* Update org-roam.org by @marcosbodio in https://github.com/org-roam/org-roam/pull/2441
+* (chore): fix indent blocking ci lint execution by @Delapouite in https://github.com/org-roam/org-roam/pull/2448
+* Fix Issue #2410 - Unlinked References doesnt work if the org-roam-directory has a space in it.  by @vikram-mandyam in https://github.com/org-roam/org-roam/pull/2411
+* (test): add "org-roam--list-files-search-globs" by @Delapouite in https://github.com/org-roam/org-roam/pull/2449
+* Backlink heading by @toregilhk in https://github.com/org-roam/org-roam/pull/2333
+* (test): add org-roam-id-find by @Delapouite in https://github.com/org-roam/org-roam/pull/2450
+* (test): add org-roam-id-at-point by @Delapouite in https://github.com/org-roam/org-roam/pull/2451
+* (test): add org-roam--buffer-promoteable-p by @Delapouite in https://github.com/org-roam/org-roam/pull/2452
+* (test): add org-roam--get-titles by @Delapouite in https://github.com/org-roam/org-roam/pull/2453
+* (test): add org-roam-node-from-{id|title-or-alias} by @Delapouite in https://github.com/org-roam/org-roam/pull/2454
+* (test): add org-roam-alias-{add|remove} by @Delapouite in https://github.com/org-roam/org-roam/pull/2455
+* (docs): add missing versions dates and obsolete notice by @Delapouite in https://github.com/org-roam/org-roam/pull/2456
+* (docs): explain org-roam-file-exclude-regexp by @adamoudad in https://github.com/org-roam/org-roam/pull/2458
+* (test): add org-roam-demote-entire-buffer by @Delapouite in https://github.com/org-roam/org-roam/pull/2459
+* (test): add org-roam-file-p by @Delapouite in https://github.com/org-roam/org-roam/pull/2460
+* (test): add org-roam-buffer-p by @Delapouite in https://github.com/org-roam/org-roam/pull/2461
+* (fix): remove dead-code about org-roam-shield feature by @Delapouite in https://github.com/org-roam/org-roam/pull/2462
+* (test): add org-roam-db--file-hash by @Delapouite in https://github.com/org-roam/org-roam/pull/2464
+* (test): add org-roam-db-get-{scheduled|deadline}-time by @Delapouite in https://github.com/org-roam/org-roam/pull/2465
+* Doc formatting: 2 fixes by @kevinrineer in https://github.com/org-roam/org-roam/pull/2475
+* Take org-roam-node as argument to #'org-roam-refile by @pestctrl in https://github.com/org-roam/org-roam/pull/2388
+* Compatibility with latest org-id version: advise org-id-find rather than overwriting id link by @ricklupton in https://github.com/org-roam/org-roam/pull/2432
+* Depend on emacsql 4.0.0 by @bcc32 in https://github.com/org-roam/org-roam/pull/2466
+* Use regexp match to replace hard-coded path equal test by @manphiz in https://github.com/org-roam/org-roam/pull/2497
+* Align sqlite integration with emacsql 4.0 by @dustinfarris in https://github.com/org-roam/org-roam/pull/2503
+* fix #2425 Prevent data loss when user has called org-roam-extract-subtree on folded org headline by @akashpal-21 in https://github.com/org-roam/org-roam/pull/2444
+* Rely on emacsql-sqlite-open to pick the best available back-end by @tarsius in https://github.com/org-roam/org-roam/pull/2486
+* Set org-roam-directory to a non-existent path to ensure robust test by @manphiz in https://github.com/org-roam/org-roam/pull/2499
+* (perf): Deprecate link :outline properties by @meedstrom in https://github.com/org-roam/org-roam/pull/2509
+* Bump DB version to avoid error by @meedstrom in https://github.com/org-roam/org-roam/pull/2514
+
+
+## 2.2.2 (2022-04-25)
+
+### Breaking
+### Added
+- [#2138](https://github.com/org-roam/org-roam/pull/2138) export: add new module
+- [#2170](https://github.com/org-roam/org-roam/pull/2170) log: add new module for working with org logs
+- [#2158](https://github.com/org-roam/org-roam/pull/2158) db: support emacsql-sqlite-builtin and emacsql-sqlite-module
+- [#2160](https://github.com/org-roam/org-roam/pull/2160) core: support a list of `org-roam-file-exclude-regexp`
+
+### Removed
+### Fixed
+- [#2091](https://github.com/org-roam/org-roam/pull/2091) node: fix org-roam-promote-entire-buffer structural errors
+- [#2130](https://github.com/org-roam/org-roam/pull/2130) buffer: unlinked-references section now also searches within symlinked directories
+- [#2152](https://github.com/org-roam/org-roam/pull/2152) org-roam-preview-default-function: doesn't copy copy content of next heading node when current node's content is empty
+- [#2159](https://github.com/org-roam/org-roam/pull/2159) db: fix db syncs on narrowed buffers
+- [#2156](https://github.com/org-roam/org-roam/pull/2157) capture: templates with functions are handled correctly to avoid signaling `char-or-string-p`
+
+### Changed
+- [#2160](https://github.com/org-roam/org-roam/pull/2160) core: ignore files in `org-attach-id-dir` by default
+
+## 2.2.1 (2022-03-15)
+
+### Breaking
+- [#2054](https://github.com/org-roam/org-roam/pull/2054) node: simplify default `org-roam-node-display-template`.
+  This was done so completions work fine by default on all completion systems. To restore the tabular vertical completion interface, set this in your configuration:
+
+  ```emacs-lisp
+  (setq org-roam-node-display-template
+        (concat "${title:*} "
+                (propertize "${tags:10}" 'face 'org-tag)))
+  ```
+
+### Added
+- [#2042](https://github.com/org-roam/org-roam/pull/2042) db: add `org-roam-db-extra-links-elements` and `org-roam-db-extra-links-exclude-keys` for fine-grained control over additional link parsing
+- [#2049](https://github.com/org-roam/org-roam/pull/2049) capture: allow ID to be used as part of `org-roam-capture-templates`
+- [#2050](https://github.com/org-roam/org-roam/pull/2050) core: add `FILTER-FN` to `org-roam-node-random`
+- [#2065](https://github.com/org-roam/org-roam/pull/2065) dailies: add `keys` argument to the remaining dailies functions `org-roam-dailies-goto-yesterday`/`-today`/`-tomorrow`/`-date` and `org-roam-dailies-capture-yesterday`/`-tomorrow`/`-date` to give the abilty to get into a capture buffer bypassing the selection screen in all dailies commands. Extension of #2055
+- [#2079](https://github.com/org-roam/org-roam/pull/2079) capture: ensure that `:ref` info captured in all cases.
+- [#2121](https://github.com/org-roam/org-roam/pull/2121) buffer: add unique option to `org-roam-backlinks-section`
+
+### Removed
+### Fixed
+- [#2086](https://github.com/org-roam/org-roam/pull/2086) capture: correctly update org-id-locations on capture
+- [#2082](https://github.com/org-roam/org-roam/pull/2082) buffer: don't destroy window if `org-roam-node-toggle` reuses window
+- [#2080](https://github.com/org-roam/org-roam/pull/2080) dailies: prevent multiple "dailies/" subdir expansions
+- [#2055](https://github.com/org-roam/org-roam/pull/2055) dailies: removed stray f require, which was causing require and compilation errors
+- [#2117](https://github.com/org-roam/org-roam/pull/2117) capture: preserve trailing whitespace content in capture templates
+
+### Changed
+- [#2060](https://github.com/org-roam/org-roam/pull/2060) node: added double acute accent normalization for Unicode characters in titles
+- [#2040](https://github.com/org-roam/org-roam/pull/2040) completions: fix completions display-width for Helm users
+- [#2025](https://github.com/org-roam/org-roam/pull/2025) chore: removed the dependencies on f.el and s.el
+- [#2109](https://github.com/org-roam/org-roam/pull/2109) capture: `org-roam-node-insert` places cursor after inserted link where appropriate
+- [#2123](https://github.com/org-roam/org-roam/pull/2123), [#2124](https://github.com/org-roam/org-roam/pull/2124) buffer: `org-roam-mode-section-functions` renamed to `org-roam-mode-sections`, supports passing args into the section-rendering function
+
+## 2.2.0 (2022-01-14)
+
+### Added
+- [#1806](https://github.com/org-roam/org-roam/pull/1806), [#2017](https://github.com/org-roam/org-roam/pull/2017) db: support caching and usage of Org 9.5's in-built citations
+- [#1963](https://github.com/org-roam/org-roam/pull/1963) db: cache file title into files table
+- [#1977](https://github.com/org-roam/org-roam/pull/1977) db: support Org-ref v3 citations
+- [#1907](https://github.com/org-roam/org-roam/pull/1907), [#2009](https://github.com/org-roam/org-roam/pull/2009), [#2018](https://github.com/org-roam/org-roam/pull/2018) db: support sqlite3
+- [#2028](https://github.com/org-roam/org-roam/pull/2028) dailies: add `keys` argument to `org-roam-dailies-capture-today` and `org-roam-dailies--capture` functions to give the abilty to get into a capture buffer bypassing the selection screen
+
+### Removed
+### Changed
+- [#1795](https://github.com/org-roam/org-roam/pull/1795) buffer: optimized reflinks fetch
+- [#1809](https://github.com/org-roam/org-roam/pull/1809) capture: the mandatory `:if-new` property of each capture template is now renamed to `:target`
+- [#1829](https://github.com/org-roam/org-roam/pull/1829) perf: file sql updates are now wrapped in a transaction
+- [#1877](https://github.com/org-roam/org-roam/pull/1877) dailies: stop asking for time, only date
+- [#1949](https://github.com/org-roam/org-roam/pull/1949) db: check for property drawers are now case-insensitive
+
+### Fixed
+- [#1798](https://github.com/org-roam/org-roam/pull/1798) org-roam-node-at-point: do not skip invisible headings
+- [#1807](https://github.com/org-roam/org-roam/pull/1807) capture: always trigger `:if-new` template for existing nodes
+- [#1813](https://github.com/org-roam/org-roam/pull/1813) db: prevent empty ROAM_ALIASES from crashing db updates
+- [#1816](https://github.com/org-roam/org-roam/pull/1816) db: prevent invalid ROAM_REFS from crashing db updates
+- [#1893](https://github.com/org-roam/org-roam/pull/1893), [#1896](https://github.com/org-roam/org-roam/pull/1896), [#1901](https://github.com/org-roam/org-roam/pull/1901), [#1895](https://github.com/org-roam/org-roam/pull/1895), [#1904](https://github.com/org-roam/org-roam/pull/1904) completions: various mini-buffer related completion fixes
+- [#1931](https://github.com/org-roam/org-roam/pull/1931) utils: org-roam-set-keyword now skips over all drawers
+- [#1947](https://github.com/org-roam/org-roam/pull/1947) db: links in ROAM_REFS are no longer considered as links
+- [#1948](https://github.com/org-roam/org-roam/pull/1948) completions: fix same-line completions
+- [#1953](https://github.com/org-roam/org-roam/pull/1953) db: refresh CATEGORY before writing to db
+- [#1946](https://github.com/org-roam/org-roam/pull/1946), [#1946](https://github.com/org-roam/org-roam/pull/1946), [#1958](https://github.com/org-roam/org-roam/pull/1958) various performance improvements
+- [#1980](https://github.com/org-roam/org-roam/pull/1980) utils: fix org-roam-with-file changing the minor-mode
+- [#2016](https://github.com/org-roam/org-roam/pull/2016) db: fix node caching being affected by agenda variables
+- [#2033](https://github.com/org-roam/org-roam/pull/2023) db: respect local variables during db parsing
+
+## 2.1.0 (2021-08-20)
+
+### Added
+- [#1693](https://github.com/org-roam/org-roam/pull/1693) added `filter-fn` and `templates` parameter to `org-roam-capture`, `org-roam-node-find`, and `org-roam-node-insert`
+- [#1709](https://github.com/org-roam/org-roam/pull/1709) added ability to specify default value in org-roam capture templates
+- [#1710](https://github.com/org-roam/org-roam/pull/1710) added `org-roam-extract-subtree`
+- [#1720](https://github.com/org-roam/org-roam/pull/1720) added `org-roam-db-update-on-save`
+- [#1758](https://github.com/org-roam/org-roam/pull/1758) added `org-roam-db-autosync-mode`, replacing `org-roam-setup` and `org-roam-teardown`
+
+### Removed
+- [#1716](https://github.com/org-roam/org-roam/pull/1716) helper function `org-roam-get-keyword` is now obsolete: prefer `org-collect-keywords`
+
+### Changed
+- [#1595](https://github.com/org-roam/org-roam/pull/1595), [#1724](https://github.com/org-roam/org-roam/pull/1724) Major refactoring and restructuring of the codebase
+- [#1655](https://github.com/org-roam/org-roam/pull/1655) improved org-roam contents preview
+- [#1741](https://github.com/org-roam/org-roam/pull/1741) expose `org-roam-capture-` keys in interactive commands
+- [#1786](https://github.com/org-roam/org-roam/pull/1786) org-roam-version now outputs commit hash if found
+- [#1788](https://github.com/org-roam/org-roam/pull/1788) the point is not moved if the node is already visited
+
+### Fixed
+- [#1608](https://github.com/org-roam/org-roam/pull/1608) migration: empty ROAM_REFS are now removed
+- [#1609](https://github.com/org-roam/org-roam/pull/1609) migration: fixed file-link replacement
+- [#1653](https://github.com/org-roam/org-roam/pull/1653) migration: fixed tags migration
+- [#1694](https://github.com/org-roam/org-roam/pull/1694) core: nodes with no title are now skipped
+- [#1637](https://github.com/org-roam/org-roam/pull/1637) core: fix org-ref multi-cite links not being split
+- [#1651](https://github.com/org-roam/org-roam/pull/1651) core: fix org-roam-file-p crashing when there is no corresponding file
+- [#1705](https://github.com/org-roam/org-roam/pull/1705) core: fix for add/remove of file-level tags
+- [#1769](https://github.com/org-roam/org-roam/pull/1769) core: gracefully handle absence of `org-id-locations-file`
+- [#1713](https://github.com/org-roam/org-roam/pull/1713) capture: check for file-existence before template insertion
+- [#1725](https://github.com/org-roam/org-roam/pull/1725) db: always compute hash of encrypted file to prevent re-processing of encrypted files
+
+## 2.0.0 (2021-07-17)
+
+A few symbols have been marked as obsolete. Have a look at the content of [org-roam-compat.el](https://github.com/org-roam/org-roam/blob/f819720c510185af713522c592833ec9f2934251/org-roam-compat.el#L159)
+
+### Added
+- [#1396](https://github.com/org-roam/org-roam/pull/1396) add option to choose between prepending, appending, and omitting `roam_tags` in file completion
+- [#1270](https://github.com/org-roam/org-roam/pull/1270) capture: create OLP if it does not exist. Removes need for OLP setup in `:head`.
+- [#1353](https://github.com/org-roam/org-roam/pull/1353) support file-level property drawers
+
+### Changed
+
+- [#1352](https://github.com/org-roam/org-roam/pull/1352) prefer lower-case for roam_tag and roam_alias in interactive commands
+- [#1513](https://github.com/org-roam/org-roam/pull/1513) replaced hardcoded "svg" with defcustom org-roam-graph-filetype
+- [#1540](https://github.com/org-roam/org-roam/pull/1540) allow `roam_tag` and `roam_alias` to be specified on multiple lines
+
+### Fixed
+
+- [#1281](https://github.com/org-roam/org-roam/pull/1281) fixed idle-timer not instantiated on `org-roam-mode`
+- [#1308](https://github.com/org-roam/org-roam/pull/1308) fixed file renames corrupting database
+- [#1325](https://github.com/org-roam/org-roam/pull/1325) make titles and tags extracted unique per note
+- [#1327](https://github.com/org-roam/org-roam/pull/1327) preserve existing link description during automatic replacement
+- [#1346](https://github.com/org-roam/org-roam/pull/1346) prevent malformed path to `org-roam-index-file`
+- [#1347](https://github.com/org-roam/org-roam/pull/1347) allow use of `%a` element in regular Org-roam captures
+- [#1352](https://github.com/org-roam/org-roam/pull/1352) fixed org-roam-{tag/alias}-{add/delete} altering the original case of the Org property
+- [#1374](https://github.com/org-roam/org-roam/pull/1374) fix headline completions erroring out
+- [#1375](https://github.com/org-roam/org-roam/pull/1375) fix org-roam-protocol to use existing ref file
+- [#1403](https://github.com/org-roam/org-roam/issues/1403) fixed inconsistency between how we write and read props like alias and tags
+- [#1409](https://github.com/org-roam/org-roam/issues/1398) prevent inclusion of non-org-roam files in `org-roam-dailies--list-files`
+- [#1542](https://github.com/org-roam/org-roam/issues/1542) fix files not excluded when `org-roam-list-files-commands` is nil
+
+## 1.2.3 (2020-11-13)
+
+Primarily a stabilization and bug-fix release.
+
+Org-roam-dailies has also been revamped to include new features, see [this video](https://www.youtube.com/watch?v=1q9x2aZCJJ4) for a quick overview.
+
+### Added
+
+- [#978](https://github.com/org-roam/org-roam/pull/978) Revamp org-roam-dailies
+- [#1183](https://github.com/org-roam/org-roam/pull/1183) Interactive functions for managing aliases and tags in Org-roam file, namely `org-roam-alias-add`, `org-roam-alias-delete`, `org-roam-tag-add`, and `org-roam-tag-delete`.
+- [#1215](https://github.com/org-roam/org-roam/pull/1215) Multiple `ROAM_KEY` keywords can now be specified in one file. This allows bibliographical entries to share the same note file.
+- [#1238](https://github.com/org-roam/org-roam/pull/1238) Add `org-roam-prefer-id-links` variable to select linking method
+- [#1239](https://github.com/org-roam/org-roam/pull/1239) Allow `org-roam-protocol` to capture the webpage's selection, and add a toggle for storing the links to the pages
+- [#1264](https://github.com/org-roam/org-roam/pull/1264) add `org-roam-db-update-method` to control when the cache is rebuilt.
+
+### Changed
+
+- [#1264](https://github.com/org-roam/org-roam/pull/1264) renamed `org-roam-update-db-idle-seconds` to `org-roam-db-idle-idle-seconds`
+
+### Fixed
+
+- [#1074](https://github.com/org-roam/org-roam/issues/1074) fix `org-roam--extract-links` to handle content boundaries.
+- [#1193](https://github.com/org-roam/org-roam/issues/1193) fix `org-roam-db-build-cache` by not killing temporary buffer in `org-roam--extract-links`.
+- [#1195](https://github.com/org-roam/org-roam/issues/1195) fix ID face showing as invalid if within Org ID files, but not Org-roam's.
+- [#1199](https://github.com/org-roam/org-roam/issues/1199) make Org-roam link insertions respect `org-roam-link-title-format` everywhere.
+- [#1201](https://github.com/org-roam/org-roam/issues/1201) fix `org-roam-db-build-cache` failing in scenarios involving duplicate IDs and deleted files.
+- [#1226](https://github.com/org-roam/org-roam/issues/1226) only update relative path of file links
+- [#1232](https://github.com/org-roam/org-roam/issues/1232) fix incorrect title extractions from narrowed buffers
+- [#1233](https://github.com/org-roam/org-roam/issues/1233) fixes bug where descriptive file links become plain links during update for relative paths
+- [#1252](https://github.com/org-roam/org-roam/issues/1252) respect original link type during automatic replacement
+
+## 1.2.2 (2020-10-06)
+
+In this release we support fuzzy links of the form `[[roam:Title]]`, `[[roam:*Headline]]` and `[[roam:Title*Headline]]`. Completion for these fuzzy links is supported via `completion-at-point`.
+
+Org-roam now does not resolve symlinks. This significantly speeds up cache builds, but may result in some workflows breaking. In particular, Org-roam now cannot figure out if two distinct file paths in the Org-roam directory are the same file, and both files will be processed as if they were different files. This error seems to be unavoidable now that symlinks are not resolved, but this workflow is rare and should not affect most users.
+
+This change requires you to set `org-roam-directory` to the resolved path of a folder. That is:
+
+```elisp
+(setq org-roam-directory (file-truename "/path/to/directory/"))
+```
+
+### Breaking Changes
+
+- [#1164](https://github.com/org-roam/org-roam/pull/1164) Org-roam now stores the database in the user's Emacs directory by default
+- [#910](https://github.com/org-roam/org-roam/pull/910) Deprecate `company-org-roam`, using `completion-at-point` instead. To use this with company, add the `company-capf` backend instead.
+- [#1109](https://github.com/org-roam/org-roam/pull/1109) Org-roam now does not resolve symlinks.
+
+### Features
+
+- [#1163](https://github.com/org-roam/org-roam/pull/1163) Support file-level IDs introduced in Org 9.4
+- [#1093](https://github.com/org-roam/org-roam/pull/1093) Add `vanilla` org-roam-tag-source to extract buffer Org tags
+- [#1079](https://github.com/org-roam/org-roam/pull/1079) Add `org-roam-tag-face` to customize appearance of tags in interactive commands
+- [#1073](https://github.com/org-roam/org-roam/pull/1073) Rename file on title change, when `org-roam-rename-file-on-title-change` is non-nil.
+- [#1071](https://github.com/org-roam/org-roam/pull/1071) Update link descriptions on title changes, and clean-up rename file advice
+- [#1061](https://github.com/org-roam/org-roam/pull/1061) Speed up the extraction of file properties, headlines, and titles
+- [#1046](https://github.com/org-roam/org-roam/pull/1046) New user option to exclude files from Org-roam
+- [#1032](https://github.com/org-roam/org-roam/pull/1032) File changes are now propagated to the database on idle timer. This prevents large wait times during file saves.
+- [#974](https://github.com/org-roam/org-roam/pull/974) Protect region targeted by `org-roam-insert`
+- [#994](https://github.com/org-roam/org-roam/pull/994) Simplify org-roam-store-link
+- [#1062](https://github.com/org-roam/org-roam/pull/1062) Variable `org-roam-completions-everywhere` allows for completions everywhere from word at point
+- [#910](https://github.com/org-roam/org-roam/pull/910), [#1105](https://github.com/org-roam/org-roam/pull/1105) Support fuzzy links of the form `[[roam:Title]]`, `[[roam:*Headline]]` and `[[roam:Title*Headline]]`
+
+### Bugfixes
+
+- [#1057](https://github.com/org-roam/org-roam/pull/1057) Improve performance of database builds by preventing generation of LaTeX and image previews.
+- [#1103](https://github.com/org-roam/org-roam/pull/1103) Fix long build-times for Windows on files with URL links
+
+## 1.2.1 (2020-07-27)
+
+This release consisted of a big deal of refactoring and bug fixes. Notably, we fixed several catastrophic failures on db builds with bad setups (#854), and modularized tag and title extractions.
+
+We also added some new features that had been a long time coming:
+
+1. We made the backlinks more outline-friendly by also showing the outline hierarchy for a backlink (#863)
+2. We now support nested captures, which is crucial for `org-roam-protocol` (#966)
+
+### Breaking Changes
+
+- [#908](https://github.com/org-roam/org-roam/pull/908) Normalized titles in database. May break external packages that rely on unnormalized titles.
+
+### Features
+
+- [#814](https://github.com/org-roam/org-roam/pull/814) Implement `org-roam-insert-immediate`
+- [#833](https://github.com/org-roam/org-roam/pull/833) Add customization of file titles with `org-roam-title-to-slug-function`.
+- [#839](https://github.com/org-roam/org-roam/pull/839) Return selected file from `org-roam-insert`
+- [#847](https://github.com/org-roam/org-roam/pull/847) Add GC threshold `org-roam-db-gc-threshold` to temporarily change the threshold on expensive operations.
+- [#847](https://github.com/org-roam/org-roam/pull/847) Use sqlite3 transactions instead of storing the values to be inserted.
+- [#851](https://github.com/org-roam/org-roam/pull/851) Add `'first-directory'` option for `org-roam-tag-sources`
+- [#863](https://github.com/org-roam/org-roam/pull/863) Display outline hierarchy in backlinks buffer
+- [#898](https://github.com/org-roam/org-roam/pull/898) Add `org-roam-random-note` to browse a random note.
+- [#900](https://github.com/org-roam/org-roam/pull/900) Support and index all valid org links
+- [#966](https://github.com/org-roam/org-roam/pull/966) Enable nested captures
+
+### Bugfixes
+
+- [#854](https://github.com/org-roam/org-roam/pull/854) Warn instead of fail when duplicate refs and IDs exist.
+- [#857](https://github.com/org-roam/org-roam/pull/857) Fix tag extraction for symlinked directories.
+- [#894](https://github.com/org-roam/org-roam/pull/894) Perform link fixes on all Org-roam files
+- [#952](https://github.com/org-roam/org-roam/pull/952) Cache `${foo}` template variables so they do not need to be re-entered twice
+
+## 1.2.0 (2020-06-12)
+
+In this release, we improved the linking process by achieving feature parity between links to files and links to headlines. Before, we used the `file:foo::*bar` format to link to the headline `bar` in file `foo`, but this was prone to breakage upon renaming the file or modifying the headline. This is not the case anymore. Now, we use `org-id` to create IDs for those headlines, which are then stored in our database to compute the relationships and jump around. Note that this will work even if you’re not using `org-id` in your global configuration for Org-mode.
+
+This is a major step forward. Supporting the in-file structure of Org-mode files means that we can interface with many of its core-features like TODOs, properties, priorities, etc. UX will have to be figured out, but this release ushers in a new age in terms of functionalities.
+
+We also add `org-roam-unlinked-references`, which naively finds text that could be references to the current Org-roam file.
+
+### Breaking Changes
+
+- [#701](https://github.com/org-roam/org-roam/pull/701) Use `emacsql-sqlite3` instead of `emacsql-sqlite` for better Windows compatibility. This requires the presence of the standard `sqlite3` binary on your machine.
+- [#750](https://github.com/org-roam/org-roam/pull/750) Deprecate `org-roam-buffer-no-delete-other-windows` in favour of `org-roam-buffer-window-parameters`.
+
+### Features
+
+- [#787](https://github.com/org-roam/org-roam/pull/787) Add `org-roam-unlinked-references`
+- [#783](https://github.com/org-roam/org-roam/pull/783) Add support for headlines
+- [#757](https://github.com/org-roam/org-roam/pull/757) Roam global properties are now case-insensitive
+- [#680](https://github.com/org-roam/org-roam/pull/680) , [#703](https://github.com/org-roam/org-roam/pull/703), [#708](https://github.com/org-roam/org-roam/pull/708) Add `org-roam-doctor` checkers for `ROAM_*` properties
+- [#664](https://github.com/org-roam/org-roam/pull/664) Add support for shelling out to `rg` and `find` in `org-roam--list-files`
+- [#679](https://github.com/org-roam/org-roam/pull/679), [#683](https://github.com/org-roam/org-roam/pull/683) Building of the graph now happens in a separate process
+
+### Bugfixes
+
+- [#714](https://github.com/org-roam/org-roam/pull/714) No longer print citelinks in backlinks buffer if there is no `ROAM_KEY` property or `org-ref` is not installed
+- [#759](https://github.com/org-roam/org-roam/pull/759), [#760](https://github.com/org-roam/org-roam/pull/760) Tags are only added to the tags table if there are actually tags present
+- [#700](https://github.com/org-roam/org-roam/pull/700), [#733](https://github.com/org-roam/org-roam/pull/733) Allow symlinks within the `org-roam` directory
+
+## 1.1.1 (2020-05-18)
 
 In this release, we added two new features:
 
 1. `org-roam-doctor`: a linting system that helps you discover possible problems with your Org-roam files. This is in the spirit of keeping notes in top quality.
-2. A tagging system: one can now use sub-directories, and the `#+ROAM_TAG` key add additional meta data to notes. For more information, see [here](https://org-roam.github.io/org-roam/manual/Tags.html#Tags).
+2. A tagging system: one can now use sub-directories, and the `#+roam_tags` key add additional meta data to notes. For more information, see [here](https://www.orgroam.com/manual/Tags.html#Tags).
 
 As usual, this release comes with a multitude of bug-fixes and refactorings.
 
@@ -40,7 +403,7 @@ As usual, this release comes with a multitude of bug-fixes and refactorings.
 - [#606](https://github.com/org-roam/org-roam/pull/606) Added `org-roam-dev.el` for developer coding standards
 - [#622](https://github.com/org-roam/org-roam/pull/622) Online documentation now points to the Org-based documentation
 
-## 1.1.0 (21-04-2020)
+## 1.1.0 (2020-04-21)
 
 To the average user, this release is mainly a bugfix release with additional options to customize. However, the changes made to the source is significant. Most notably, in this release:
 
@@ -78,7 +441,7 @@ In the coming months, you can expect work on bigger projects (e.g. revamping the
 - [#363](https://github.com/org-roam/org-roam/pull/363), [#473](https://github.com/org-roam/org-roam/pull/473) Modularize org-roam features.
 - [#497](https://github.com/org-roam/org-roam/pull/497) Simplify `org-roam--list-files` implementation
 
-## 1.0.0 (23-03-2020)
+## 1.0.0 (2020-03-23)
 
 Org-roam is now on MELPA! We have squashed most of the bugs, and Org-roam has
 been stable for the most part.
@@ -97,7 +460,7 @@ been stable for the most part.
 - [#293](https://github.com/org-roam/org-roam/pull/293) Fix capture templates not working as expected for `org-roam-find-file`
 - [#275](https://github.com/org-roam/org-roam/pull/275) Fix database rebuild when `org-roam-directory` is set locally
 
-## 1.0.0-rc1 (06-03-2020)
+## 1.0.0-rc1 (2020-03-06)
 
 This is a pre-release before the push to MELPA. It contains large
 internal changes, with little user-facing changes. Most notably, the

Eldev

@@ -0,0 +1,29 @@
+; -*- mode: emacs-lisp; lexical-binding: t; no-byte-compile: t -*-
+
+;; explicitly set main file
+(setf eldev-project-main-file "org-roam.el")
+
+(eldev-use-package-archive 'gnu)
+(eldev-use-package-archive 'melpa-unstable)
+
+;; allow to load test helpers
+(eldev-add-loading-roots 'test "test/utils")
+
+;; Tell checkdoc not to demand two spaces after a period.
+(setq sentence-end-double-space nil)
+
+(setf eldev-lint-default '(elisp))
+(setf eldev-standard-excludes `(:or ,eldev-standard-excludes "org-roam-macs.el"))
+
+(with-eval-after-load 'elisp-lint
+  ;; We will byte-compile with Eldev.
+  (setf elisp-lint-ignored-validators '("package-lint" "fill-column")
+        enable-local-variables        :all))
+
+;; Teach linter how to properly indent emacsql vectors
+(eldev-add-extra-dependencies 'lint 'emacsql)
+(add-hook 'eldev-lint-hook
+          (lambda ()
+            (eldev-load-project-dependencies 'lint nil t)
+            (require 'emacsql)
+            (call-interactively #'emacsql-fix-vector-indentation)))

Makefile

@@ -1,70 +1,31 @@
-# * makem.sh/Makefile --- Script to aid building and testing Emacs Lisp packages
+.PHONY: clean
+clean:
+	eldev clean all
+	$(MAKE) -C doc clean
 
-# This Makefile is from the makem.sh repo: <https://github.com/alphapapa/makem.sh>.
+.PHONY: prepare
+prepare:
+	eldev -C --unstable -p -dtT prepare
 
-# * Arguments
+.PHONY: lint
+lint:
+	eldev -C --unstable -T lint
 
-# For consistency, we use only var=val options, not hyphen-prefixed options.
-
-# NOTE: I don't like duplicating the arguments here and in makem.sh,
-# but I haven't been able to find a way to pass arguments which
-# conflict with Make's own arguments through Make to the script.
-# Using -- doesn't seem to do it.
-
-ifdef install-deps
-	INSTALL_DEPS = "--install-deps"
-endif
-ifdef install-linters
-	INSTALL_LINTERS = "--install-linters"
-endif
-
-ifdef sandbox
-	ifeq ($(sandbox), t)
-		SANDBOX = --sandbox
-	else
-		SANDBOX = --sandbox $(sandbox)
-	endif
-endif
-
-ifdef debug
-	DEBUG = "--debug"
-endif
-
-# ** Verbosity
-
-# Since the "-v" in "make -v" gets intercepted by Make itself, we have
-# to use a variable.
-
-verbose = $(v)
-
-ifneq (,$(findstring vv,$(verbose)))
-	VERBOSE = "-vv"
-else ifneq (,$(findstring v,$(verbose)))
-	VERBOSE = "-v"
-endif
-
-# * Rules
-
-# TODO: Handle cases in which "test" or "tests" are called and a
-# directory by that name exists, which can confuse Make.
-
-%:
-	@./makem.sh $(DEBUG) $(VERBOSE) $(SANDBOX) $(INSTALL_DEPS) $(INSTALL_LINTERS) $(@)
-
-.DEFAULT: init
-init:
-	@./makem.sh $(DEBUG) $(VERBOSE) $(SANDBOX) $(INSTALL_DEPS) $(INSTALL_LINTERS)
+.PHONY: test
+test:
+	eldev -C --unstable -T test
 
+.PHONY: docs
 docs:
-	@$(MAKE) -C doc all
+	$(MAKE) -C doc
 
+.PHONY: html
 html:
-	@$(MAKE) -C doc html-dir
+	$(MAKE) -C doc html
 
+.PHONY: install
 install: install-docs
 
-install-docs: docs
-	@$(MAKE) -C doc install-docs
-
-install-info: info
-	@$(MAKE) -C doc install-info
+.PHONY: install-docs
+install-docs:
+	$(MAKE) -C doc install

README.md

@@ -1,85 +1,232 @@
-[![License GPL 3][badge-license]](http://www.gnu.org/licenses/gpl-3.0.txt)
-[![GitHub Release](https://img.shields.io/github/v/release/org-roam/org-roam)](https://img.shields.io/github/v/release/org-roam/org-roam)
-[![MELPA](https://melpa.org/packages/org-roam-badge.svg)](https://melpa.org/#/org-roam)
+# Org-roam [![GitHub Release][release-badge]][release] [![MELPA][melpa-badge]][melpa] [![License GPL 3][gpl3-badge]][gpl3]
 
-## Synopsis
+<img src="https://www.orgroam.com/img/logo.svg" align="right" alt="Org-roam Logo" width="240">
 
-Org-roam is a [Roam][roamresearch] replica built on top of the
-all-powerful [Org-mode][org].
+Org-roam is a plain-text knowledge management system. It brings some of
+[Roam's][roamresearch] more powerful features into the [Org-mode][org]
+ecosystem.
 
-Org-roam is a solution for effortless non-hierarchical note-taking
-with Org-mode. With Org-roam, notes flow naturally, making note-taking
-fun and easy. Org-roam should also work as a plug-and-play solution
-for anyone already using Org-mode for their personal wiki.
+Org-roam borrows principles from the Zettelkasten method, providing a solution
+for non-hierarchical note-taking. It should also work as a plug-and-play
+solution for anyone already using Org-mode for their personal wiki.
 
-Org-roam aims to implement the core features of Roam, leveraging the
-mature ecosystem around Org-mode where possible. Eventually, we hope
-to further introduce features enabled by the Emacs ecosystem.
+- **Private and Secure**: Edit your personal wiki completely offline, entirely
+  in your control. Encrypt your notes with GPG. Take lasting notes in
+  plain-text.
+- **Networked Thought**: Connect notes and thoughts together with ease using
+  backlinks. Discover surprising and previously unseen connections in your notes
+  with the built-in graph visualization.
+- **Extensible and Powerful**: Leverage Emacs' fantastic text-editing interface,
+  and the mature Emacs and Org-mode ecosystem of packages.
+- **Free and Open Source**: Org-roam is licensed under the GNU General Public
+  License version 3 or later.
 
-[@technovangelist](https://github.com/technovangelist/) has produced a video
-describing Org-roam and the concepts behind it:
-
-[![Making Connections in your Notes](http://img.youtube.com/vi/Lg61ocfxk3c/0.jpg)](http://www.youtube.com/watch?v=Lg61ocfxk3c "Making Connections in your Notes")
-
-Important links:
+<p align="center">
+  <img src="https://www.orgroam.com/img/screenshot.png" alt="Org-roam Screenshot" width="738">
+</p>
 
 - **[Documentation][docs]**
 - **[Discourse][discourse]**
 - **[Slack][slack]**
-
-## A Preview
-
-Here's a screencast of Org-roam. The `org-roam-buffer` (window on the
-right) shows backlinks for the active Org-roam buffer (window on the
-left), as well as the surrounding content in the backlink file. The
-database is built once, and updated incrementally. The graph is
-generated from the link structure, and can be used to navigate to the
-respective files.
-
-![img](doc/images/org-roam-graph.gif)
+- **[Frequently Asked Questions][faq]**
+- **[Changelog](CHANGELOG.md)**
 
 ## Installation
 
-You can install `org-roam` using `package.el`:
+Down below you will find basic installation instructions for how to quickly
+install `org-roam` using various environments for various purposes. For more
+detailed information, please read the [manual][docs].
+
+### Using `package.el`
+<details>
+<summary>Toggle instructions</summary>
+
+You can install `org-roam` from [MELPA](https://melpa.org/) or [MELPA
+Stable](https://stable.melpa.org/) using `package.el`:
 
 ```
 M-x package-install RET org-roam RET
 ```
+</details>
 
-Here's a sample configuration with using `use-package`:
+### Using `straight.el`
+<details>
+<summary>Toggle instructions</summary>
+
+Installation from MELPA or MELPA Stable using `straight.el`:
+
+```emacs-lisp
+(straight-use-package 'org-roam)
+```
+
+Or with `use-package`:
 
 ```emacs-lisp
 (use-package org-roam
-      :hook
-      (after-init . org-roam-mode)
-      :custom
-      (org-roam-directory "/path/to/org-files/")
-      :bind (:map org-roam-mode-map
-              (("C-c n l" . org-roam)
-               ("C-c n f" . org-roam-find-file)
-               ("C-c n g" . org-roam-show-graph))
-              :map org-mode-map
-              (("C-c n i" . org-roam-insert))))
+  :straight t
+  ...)
 ```
 
-`org-roam-graph` by default expects to find the `dot` executable
-from the `graphviz` package in the `exec-path`.
-Ensure `graphviz` is installed and found if you want to use this
-feature or customize your configuration for `org-roam-graph` to use a
-different tool.
+If you need to install the package directly from the source repository, instead
+of from MELPA, the next sample shows how to do so:
 
-For more detailed installation and configuration instructions (including for
-Doom and Spacemacs users), please see [the
-documentation][docs].
+```emacs-lisp
+(use-package org-roam
+  :straight (:host github :repo "org-roam/org-roam"
+             :files (:defaults "extensions/*"))
+  ...)
+```
+
+If you plan to use your own local fork for the development and contribution, the
+next sample will get you there:
+
+```emacs-lisp
+(use-package org-roam
+  :straight (:local-repo "/path/to/org-roam-fork"
+             :files (:defaults "extensions/*")
+             :build (:not compile))
+  ...)
+```
+</details>
+
+### Using Doom Emacs
+<details>
+<summary>Toggle instructions</summary>
+
+Doom's `:lang org` module comes with support for `org-roam`, but it's not
+enabled by default. To activate it pass `+roam2` flag to `org` module in your
+`$DOOMDIR/init.el` (e.g. `(org +roam2)`), save the file and run `doom sync -u`
+in your shell.
+
+To provide better stability, Doom pins the package to a specific commit. If you
+need to unpin it *(not recommended doing that, request Doom to bump the package
+instead)* use the next in your `packages.el`:
+
+```emacs-lisp
+(unpin! org-roam)
+```
+
+If for some reasons you want to use a different recipe for `org-roam`, you can
+use the next form in your `packages.el` to install the package from a recipe
+repository (e.g. MELPA):
+
+```emacs-lisp
+(package! org-roam)
+```
+
+You can pass `:pin "commit hash"` to pin the package to a specific commit.
+
+With the next sample you can install the package directly from the source
+repository:
+
+```emacs-lisp
+(package! org-roam
+  :recipe (:host github :repo "org-roam/org-roam"
+           :files (:defaults "extensions/*")))
+```
+
+And if you plan to use your own local fork for the development or contribution,
+the next sample will get you there:
+
+```emacs-lisp
+(package! org-roam
+  :recipe (:local-repo "/path/to/org-roam-fork"
+           :files (:defaults "extensions/*")
+           :build (:not compile)))
+```
+</details>
+
+### Without a package manager
+<details>
+<summary>Toggle instructions</summary>
+
+To install the package without using a package manager you have the next two
+options:
+
+1. Install the package by cloning it with `git` from the source repository.
+2. Or install the package by downloading the latest [release
+   version](https://github.com/org-roam/org-roam/releases).
+   
+In both of the cases you will need to ensure that you have all the required
+dependencies. These include:
+
+- dash
+- org (9.6 is the minimum required version!)
+- emacsql
+- magit-section
+
+After installing the package, you will need to properly setup `load-path` to the
+package:
+
+``` emacs-lisp
+(add-to-list 'load-path "/path/to/org-roam/")
+(add-to-list 'load-path "/path/to-org-roam/extensions/")
+```
+
+After which you should be able to resolve `(require 'org-roam)` call without any
+problems.
+
+Org-roam also comes with `.texi` files to integrate with Emacs' built-in Info
+system. Read the manual to find more details for how to install them manually.
+</details>
+
+## Configuration
+
+Here's a very basic sample for configuration of `org-roam` using `use-package`:
+
+```emacs-lisp
+(use-package org-roam
+  :ensure t
+  :custom
+  (org-roam-directory (file-truename "/path/to/org-files/"))
+  :bind (("C-c n l" . org-roam-buffer-toggle)
+         ("C-c n f" . org-roam-node-find)
+         ("C-c n g" . org-roam-graph)
+         ("C-c n i" . org-roam-node-insert)
+         ("C-c n c" . org-roam-capture)
+         ;; Dailies
+         ("C-c n j" . org-roam-dailies-capture-today))
+  :config
+  ;; If you're using a vertical completion framework, you might want a more informative completion interface
+  (setq org-roam-node-display-template (concat "${title:*} " (propertize "${tags:10}" 'face 'org-tag)))
+  (org-roam-db-autosync-mode)
+  ;; If using org-roam-protocol
+  (require 'org-roam-protocol))
+```
+
+Note that the `file-truename` function is only necessary when you use symbolic
+link to `org-roam-directory`. Org-roam won't automatically resolve symbolic link
+to the directory.
+## Getting Started
+
+[David Wilson](https://github.com/daviwil) of [System
+Crafters](https://www.youtube.com/c/SystemCrafters) has produced an introductory
+video that covers the basic commands:
+
+[![Getting Started with Org Roam - Build a Second Brain in Emacs](https://img.youtube.com/vi/AyhPmypHDEw/0.jpg)](https://www.youtube.com/watch?v=AyhPmypHDEw)
+
+## Getting Help
+
+Before creating a new topic/issue, please be mindful of our time and ensure that
+it has not already been addressed on [GitHub][issues] or on
+[Discourse][discourse].
+
+- If you are new to Emacs and have problem setting up Org-roam, please ask your
+  question on [Slack, channel #how-do-i][slack].
+- For quick questions, please ask them on [Slack, channel
+  #troubleshooting][slack].
+- If something is not working as it should, or if you would like to suggest a
+  new feature, please [create a new issue][issues].
+- If you have questions about your workflow with the slip-box method, please
+  find a relevant topic on [Discourse][discourse], or create a new one.
 
 ## Knowledge Bases using Org-roam
 
 - [Jethro Kuan](https://braindump.jethro.dev/)
   ([Source](https://github.com/jethrokuan/braindump/tree/master/org))
-
-## Changelog
-
-A changelog is being maintained [here](CHANGELOG.md)
+- [Alexey Shmalko](https://www.alexeyshmalko.com/)
+- [Sidharth Arya](https://sidhartharya.github.io/braindump/index.html)
+- [Martin Edström](https://edstrom.dev/)
 
 ## Contributing
 
@@ -90,11 +237,18 @@ request. Please also see [CONTRIBUTING.md](.github/CONTRIBUTING.md).
 ## License
 
 Copyright © Jethro Kuan and contributors. Distributed under the GNU
-General Public License, Version 3
+General Public License, Version 3.
 
 [roamresearch]: https://www.roamresearch.com/
 [org]: https://orgmode.org/
-[badge-license]: https://img.shields.io/badge/license-GPL_3-green.svg
-[docs]: https://org-roam.github.io/org-roam/manual/
+[gpl3-badge]: https://img.shields.io/badge/license-GPL_3-green.svg
+[gpl3]: http://www.gnu.org/licenses/gpl-3.0.txt
+[melpa-badge]: https://melpa.org/packages/org-roam-badge.svg
+[melpa]: https://melpa.org/#/org-roam
+[release-badge]: https://img.shields.io/github/v/release/org-roam/org-roam
+[release]: https://github.com/org-roam/org-roam/releases
+[docs]: https://www.orgroam.com/manual.html
 [discourse]: https://org-roam.discourse.group/
-[slack]: https://join.slack.com/t/orgroam/shared_invite/zt-deoqamys-043YQ~s5Tay3iJ5QRI~Lxg
+[slack]: https://join.slack.com/t/orgroam/shared_invite/zt-wuoize1z-x3UyQnQ0WHF0RhuEQ2NLnQ
+[issues]: https://github.com/org-roam/org-roam/issues
+[faq]: https://www.orgroam.com/manual.html#FAQ

default.mk

@@ -1,106 +0,0 @@
-TOP := $(dir $(lastword $(MAKEFILE_LIST)))
-
-## User options ######################################################
-#
-# You can override these settings in "config.mk" or on the command
-# line.
-#
-# You might also want to set LOAD_PATH.  If you do, then it must
-# contain "-L .".
-#
-# If you don't do so, then the default is set in the "Load-Path"
-# section below.  The default assumes that all dependencies are
-# installed either at "../<DEPENDENCY>", or when using package.el
-# at "ELPA_DIR/<DEPENDENCY>-<HIGHEST-VERSION>".
-
-sharedir ?= $(HOME)/.local/share
-lispdir  ?= $(sharedir)/emacs/site-lisp/org-roam
-infodir  ?= $(sharedir)/info
-docdir   ?= $(sharedir)/doc/org-roam
-statsdir ?= $(TOP)/doc/stats
-
-CP       ?= install -p -m 644
-MKDIR    ?= install -p -m 755 -d
-RMDIR    ?= rm -rf
-TAR      ?= tar
-SED      ?= sed
-
-EMACSBIN ?= emacs
-BATCH     = $(EMACSBIN) -Q --batch $(LOAD_PATH)
-
-INSTALL_INFO     ?= $(shell command -v ginstall-info || printf install-info)
-MAKEINFO         ?= makeinfo
-MANUAL_HTML_ARGS ?= --css-ref /assets/page.css
-
-## Files #############################################################
-
-PKG       = org-roam
-PACKAGES  = org-roam
-
-TEXIPAGES = $(addsuffix .texi,$(PACKAGES))
-INFOPAGES = $(addsuffix .info,$(PACKAGES))
-HTMLFILES = $(addsuffix .html,$(PACKAGES))
-HTMLDIRS  = $(PACKAGES)
-PDFFILES  = $(addsuffix .pdf,$(PACKAGES))
-EPUBFILES = $(addsuffix .epub,$(PACKAGES))
-
-ELS = org-roam-buffer.el
-ELS += org-roam-capture.el
-ELS += org-roam-compat.el
-ELS += org-roam-completion.el
-ELS += org-roam-dailies.el
-ELS += org-roam-db.el
-ELS += org-roam.el
-ELS += org-roam-graph.el
-ELS += org-roam-macs.el
-ELS += org-roam-protocol.el
-ELCS = $(ELS:.el=.elc)
-ELMS = org-roam.el $(filter-out $(addsuffix .el,$(PACKAGES)),$(ELS))
-ELGS = org-roam-autoloads.el org-roam-version.el
-
-## Versions ##########################################################
-
-VERSION ?= $(shell test -e $(TOP).git && git describe --tags --abbrev=0 | cut -c2-)
-
-EMACS_VERSION = 26.1
-
-EMACSOLD := $(shell $(BATCH) --eval \
-  "(and (version< emacs-version \"$(EMACS_VERSION)\") (princ \"true\"))")
-ifeq "$(EMACSOLD)" "true"
-  $(error At least version $(EMACS_VERSION) of Emacs is required)
-endif
-
-## Load-Path #########################################################
-
-ifndef LOAD_PATH
-
-ELPA_DIR ?= $(HOME)/.emacs.d/elpa
-
-SYSTYPE := $(shell $(EMACSBIN) -Q --batch --eval "(princ system-type)")
-ifeq ($(SYSTYPE), windows-nt)
-  CYGPATH := $(shell cygpath --version 2>/dev/null)
-endif
-
-LOAD_PATH = -L $(TOP)
-
-# When making changes here, then don't forget to adjust "Makefile",
-# ".travis.yml", ".github/ISSUE_TEMPLATE/bug_report.md",
-# `magit-emacs-Q-command' and the "Installing from the Git Repository"
-# info node accordingly.  Also don't forget to "rgrep \b<pkg>\b".
-
-endif # ifndef LOAD_PATH
-
-ifndef ORG_LOAD_PATH
-ORG_LOAD_PATH  = $(LOAD_PATH)
-ORG_LOAD_PATH += -L $(TOP)../ox-texinfo-plus
-ORG_LOAD_PATH += -L $(TOP)../org-mode/contrib/lisp
-ORG_LOAD_PATH += -L $(TOP)../org-mode/lisp
-endif
-
-## Publish ###########################################################
-
-PUBLISH_TARGETS ?= html html-dir pdf epub
-
-DOCBOOK_XSL ?= /usr/share/xml/docbook/stylesheet/docbook-xsl/epub/docbook.xsl
-
-EPUBTRASH = epub.xml META-INF OEBPS

doc/AUTHORS.md

@@ -1,37 +0,0 @@
-Authors
-=======
-
-The following people have contributed to Org-Roam.
-
-Names below are sorted alphabetically.
-
-Author
-------
-
-- Jethro Kuan <jethrokuan95@gmail.com>
-
-Maintainers
-----------
-
-- Jethro Kuan <jethrokuan95@gmail.com>
-- Leo Vivier <leo.vivier+dev@gmail.com>
-
-Contributors
-------------
-
-- Alexey Shmalko <rasen.dubi@gmail.com>
-- James Ravn <james@r-vn.org>
-- Jethro Kuan <jethrokuan95@gmail.com>
-- Johann Klähn <johann@jklaehn.de>
-- Josh English <josh@joshenglish.com>
-- Jürgen Hötzel <juergen@archlinux.org>
-- Langston Barrett <langston.barrett@gmail.com>
-- Leo Vivier <leo.vivier+dev@gmail.com>
-- Michael Glaesemann <grzm@seespotcode.net>
-- Michael Herold <github@michaeljherold.com>
-- Noboru <noboru.ota@gmail.com>
-- N V <44036031+progfolio@users.noreply.github.com>
-- Rafael Accácio Nogueira <raccacio@poli.ufrj.br>
-- Roland Coeurjoly <rolandcoeurjoly@gmail.com>
-- Sayan <dit7ya@users.noreply.github.com>
-- Tim Quelch <tim@quelch.name>

doc/Makefile

@@ -1,130 +1,94 @@
 -include ../config.mk
-include ../default.mk
 
-###################################################################
-MANUAL_HTML_ARGS = --css-ref assets/page.css
+## User options ######################################################
+#
+# You can override these settings in "config.mk" or on the command
+# line.
 
-.PHONY: texi install clean AUTHORS.md stats
+sharedir ?= $(HOME)/.local/share
+infodir  ?= $(sharedir)/info
 
-all: info
+EMACS ?= emacs
+BATCH = $(EMACS) -Q --batch
+
+INSTALL_INFO     ?= $(shell command -v ginstall-info || printf install-info)
+MAKEINFO         ?= makeinfo
+MANUAL_HTML_ARGS ?= --css-ref assets/page.css
+
+## Files #############################################################
+
+PKG       = org-roam
+PACKAGES  = org-roam
+
+INFOPAGES = $(addsuffix .info,$(PACKAGES))
+HTMLFILES = $(addsuffix .html,$(PACKAGES))
+
+## Versions ##########################################################
+
+EMACS_VERSION = 26.1
+
+EMACSOLD := $(shell $(BATCH) --eval \
+  "(and (version< emacs-version \"$(EMACS_VERSION)\") (princ \"true\"))")
+ifeq "$(EMACSOLD)" "true"
+  $(error At least version $(EMACS_VERSION) of Emacs is required)
+endif
+
+######################################################################
+
+.PHONY: default
+default: info
 
 ## Build #############################################################
 
-info: $(INFOPAGES) dir
-html: $(HTMLFILES)
-pdf:  $(PDFFILES)
-epub: $(EPUBFILES)
+.PHONY: info
+info: dir
+
+dir: $(INFOPAGES)
+	@printf "Generating dir\n"
+	@echo $^ | xargs -n 1 $(INSTALL_INFO) --dir=$@
 
 %.info: %.texi
 	@printf "Generating $@\n"
 	@$(MAKEINFO) --no-split $< -o $@
 
-dir: org-roam.info
-	@printf "Generating dir\n"
-	@echo $^ | xargs -n 1 $(INSTALL_INFO) --dir=$@
+.PHONY: html
+html: $(HTMLFILES)
+	mv $(PKG).html manual.html
 
 %.html: %.texi
 	@printf "Generating $@\n"
 	@$(MAKEINFO) --html --no-split $(MANUAL_HTML_ARGS) $<
 
-html-dir: 
-	@printf "Generating org-roam/*.html\n"
-	@$(MAKEINFO) --html $(MANUAL_HTML_ARGS) org-roam.texi
-	mv org-roam manual
-	cp -r assets manual
-	cp -r images manual
-
-%.pdf: %.texi
-	@printf "Generating $@\n"
-	@texi2pdf --clean $< > /dev/null
-
-%.epub: %.texi
-	@printf "Generating $@\n"
-	@$(MAKEINFO) --docbook $< -o epub.xml
-	@xsltproc $(DOCBOOK_XSL) epub.xml 2> /dev/null
-	@echo "application/epub+zip" > mimetype
-	@zip -X --quiet --recurse-paths -0 $@ mimetype
-	@zip -X --quiet --recurse-paths -9 --no-dir-entries $@ META-INF OEBPS
-	@$(RMDIR) $(EPUBTRASH)
-
-## Install ###########################################################
-
-install: install-info install-docs
-
-install-docs: install-info
-	@$(MKDIR) $(DESTDIR)$(docdir)
-	$(CP) AUTHORS.md $(DESTDIR)$(docdir)
-
-install-info: info
-	@$(MKDIR) $(DESTDIR)$(infodir)
-	$(CP) $(INFOPAGES) $(DESTDIR)$(infodir)
-
-## Clean #############################################################
-
-clean:
-	@printf "Cleaning doc/*...\n"
-	@$(RMDIR) dir $(INFOPAGES) $(HTMLFILES) $(HTMLDIRS) $(PDFFILES)
-	@$(RMDIR) $(EPUBFILES) $(EPUBTRASH)
-
-## Release management ################################################
-
-ORG_ARGS  = --batch -Q $(ORG_LOAD_PATH)
-ORG_ARGS += -l ox-extra -l ox-texinfo+
-ORG_ARGS += --eval "(or (require 'org-man nil t) (require 'ol-man))"
-ORG_EVAL  = --eval "(ox-extras-activate '(ignore-headlines))"
 ORG_EVAL += --eval "(setq indent-tabs-mode nil)"
 ORG_EVAL += --eval "(setq org-src-preserve-indentation nil)"
 ORG_EVAL += --funcall org-texinfo-export-to-texinfo
 
-# This target first bumps version strings in the Org source.  The
-# necessary tools might be missing so other targets do not depend
-# on this target and it has to be run explicitly when appropriate.
-#
-#   AMEND=t make texi    Update manual to be amended to HEAD.
-#   VERSION=N make texi  Update manual for release.
-#
-texi:
-	@$(EMACSBIN) $(ORG_ARGS) $(PKG).org $(ORG_EVAL)
-	@printf "\n" >> $(PKG).texi
-	@rm -f $(PKG).texi~
+# NOTE: %.org is not a prerequisite since package archives can’t generate texi
+# from org. texi is generated on org save and committed to repo
+%.texi:
+	@echo "Generating $@"
+	@$(BATCH) $*.org $(ORG_EVAL)
 
-stats:
-	@printf "Generating statistics\n"
-	@gitstats -c style=/assets/stats.css -c max_authors=999 $(TOP) $(statsdir)
+## Install ###########################################################
 
-authors: AUTHORS.md
+.PHONY: install
+install: install-info
 
-AUTHORS.md:
-	@printf "Generating AUTHORS.md..."
-	@test -e $(TOP).git \
-	&& (printf "$$AUTHORS_HEADER\n" > $@ \
-	&& git log --pretty=format:'- %aN <%aE>' | sort -u >> $@ \
-	&& printf "done\n" ; ) \
-	|| printf "FAILED (non-fatal)\n"
+.PHONY: install-info
+install-info: info
+	install -p -m 755 -d $(DESTDIR)$(infodir)
+	install -p -m 644 $(INFOPAGES) $(DESTDIR)$(infodir)
 
-# Templates ##########################################################
+## Clean #############################################################
 
-define AUTHORS_HEADER
-Authors
-=======
+.PHONY: clean
+clean:
+	@echo "Cleaning doc/*..."
+	@rm -rf dir $(INFOPAGES) $(HTMLFILES)
 
-The following people have contributed to Org-Roam.
+## Release management ################################################
 
-Names below are sorted alphabetically.
-
-Author
-------
-
-- Jethro Kuan <jethrokuan95@gmail.com>
-
-Maintainers
-----------
-
-- Jethro Kuan <jethrokuan95@gmail.com>
-- Leo Vivier <leo.vivier+dev@gmail.com>
-
-Contributors
-------------
-
-endef
-export AUTHORS_HEADER
+# Run VERSION=N make -C doc release-texi to explicitly set version when releasing
+.PHONY: release-texi
+release-texi:
+	VERSION=$(VERSION) $(MAKE) -B $(PKG).texi

doc/assets/page.css

@@ -1,442 +1,68 @@
-/* Import Inter font */
-/* More info at https://github.com/xz/fonts */
-@import url("https://fonts.xz.style/serve/inter.css");
-
 :root {
-  --nc-font-sans: "Inter", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto,
-    Oxygen, Ubuntu, Cantarell, "Open Sans", "Helvetica Neue", sans-serif,
-    "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol";
-  --nc-font-mono: "Courier New", Courier, "Ubuntu Mono", "Liberation Mono",
-    monospace;
-  --nc-tx-1: #000000;
-  --nc-tx-2: #1a1a1a;
-  --nc-bg-1: #ffffff;
-  --nc-bg-2: #f6f8fa;
-  --nc-bg-3: #e5e7eb;
-  --nc-lk-1: #0070f3;
-  --nc-lk-2: #0366d6;
-  --nc-lk-tx: #ffffff;
-  --nc-ac-1: #79ffe1;
-  --nc-ac-tx: #0c4047;
-}
-
-@media (prefers-color-scheme: dark) {
-  :root {
-    --nc-tx-1: #ffffff;
-    --nc-tx-2: #eeeeee;
-    --nc-bg-1: #000000;
-    --nc-bg-2: #111111;
-    --nc-bg-3: #222222;
-    --nc-lk-1: #3291ff;
-    --nc-lk-2: #0070f3;
-    --nc-lk-tx: #ffffff;
-    --nc-ac-1: #7928ca;
-    --nc-ac-tx: #ffffff;
-  }
-}
-
-* {
-  /* Reset margins and padding */
-  margin: 0;
-  padding: 0;
-}
-
-address,
-area,
-article,
-aside,
-audio,
-blockquote,
-datalist,
-details,
-dl,
-fieldset,
-figure,
-form,
-input,
-iframe,
-img,
-meter,
-nav,
-ol,
-optgroup,
-option,
-output,
-p,
-pre,
-progress,
-ruby,
-section,
-table,
-textarea,
-ul,
-video {
-  /* Margins for most elements */
-  margin-bottom: 1rem;
-}
-
-html,
-input,
-select,
-button {
-  /* Set body font family and some finicky elements */
-  font-family: var(--nc-font-sans);
+  --border: #526980;
+  --code: #007;
 }
 
 body {
-  /* Center body in page */
-  margin: 0 auto;
-  max-width: 750px;
-  padding: 2rem;
-  border-radius: 6px;
-  overflow-x: hidden;
-  background: var(--nc-bg-1);
-
-  /* Main body text */
-  color: var(--nc-tx-2);
-  font-size: 1.03rem;
-  line-height: 1.5;
+    margin: 5ex 10ex;
+    max-width: 80ex;
+    line-height: 1.5;
+    font-family: sans-serif;
 }
 
-::selection {
-  /* Set background color for selected text */
-  background: var(--nc-ac-1);
-  color: var(--nc-ac-tx);
+h1, h2, h3 {
+    font-weight: normal;
 }
 
-p {
-  margin-bottom: 1rem;
-}
-
-h1,
-h2,
-h3,
-h4,
-h5,
-h6 {
-  line-height: 1;
-  color: var(--nc-tx-1);
-  padding-top: 0.875rem;
-}
-
-h1,
-h2,
-h3 {
-  color: var(--nc-tx-1);
-  padding-bottom: 2px;
-  margin-bottom: 8px;
-  border-bottom: 1px solid var(--nc-bg-2);
-}
-
-h4,
-h5,
-h6 {
-  margin-bottom: 0.3rem;
-}
-
-h1 {
-  font-size: 2.25rem;
-}
-
-h2 {
-  font-size: 1.85rem;
-}
-
-h3 {
-  font-size: 1.55rem;
-}
-
-h4 {
-  font-size: 1.25rem;
-}
-
-h5 {
-  font-size: 1rem;
-}
-
-h6 {
-  font-size: 0.875rem;
-}
-
-a {
-  color: var(--nc-lk-1);
-}
-
-a:hover {
-  color: var(--nc-lk-2);
-}
-
-abbr:hover {
-  /* Set the '?' cursor while hovering an abbreviation */
-  cursor: help;
-}
-
-blockquote {
-  padding: 1.5rem;
-  background: var(--nc-bg-2);
-  border-left: 5px solid var(--nc-bg-3);
-}
-
-abbr {
-  cursor: help;
-}
-
-blockquote *:last-child {
-  padding-bottom: 0;
-  margin-bottom: 0;
-}
-
-header {
-  background: var(--nc-bg-2);
-  border-bottom: 1px solid var(--nc-bg-3);
-  padding: 2rem 1.5rem;
-
-  /* This sets the right and left margins to cancel out the body's margins. It's width is still the same, but the background stretches across the page's width. */
-
-  margin: -2rem calc(0px - (50vw - 50%)) 2rem;
-
-  /* Shorthand for:
-
-	margin-top: -2rem;
-	margin-bottom: 2rem;
-
-	margin-left: calc(0px - (50vw - 50%));
-	margin-right: calc(0px - (50vw - 50%)); */
-
-  padding-left: calc(50vw - 50%);
-  padding-right: calc(50vw - 50%);
-}
-
-header h1,
-header h2,
-header h3 {
-  padding-bottom: 0;
-  border-bottom: 0;
-}
-
-header > *:first-child {
-  margin-top: 0;
-  padding-top: 0;
-}
-
-header > *:last-child {
-  margin-bottom: 0;
-}
-
-.button,
-button,
-input[type="submit"],
-input[type="reset"],
-input[type="button"] {
-  font-size: 1rem;
-  display: inline-block;
-  padding: 6px 12px;
-  text-align: center;
-  text-decoration: none;
-  white-space: nowrap;
-  background: var(--nc-lk-1);
-  color: var(--nc-lk-tx);
-  border: 0;
-  border-radius: 4px;
-  box-sizing: border-box;
-  cursor: pointer;
-  color: var(--nc-lk-tx);
-}
-
-.button[disabled],
-button[disabled],
-input[type="submit"][disabled],
-input[type="reset"][disabled],
-input[type="button"][disabled] {
-  cursor: default;
-  opacity: 0.5;
-
-  /* Set the [X] cursor while hovering a disabled link */
-  cursor: not-allowed;
-}
-
-.button:focus,
-.button:hover,
-button:focus,
-button:hover,
-input[type="submit"]:focus,
-input[type="submit"]:hover,
-input[type="reset"]:focus,
-input[type="reset"]:hover,
-input[type="button"]:focus,
-input[type="button"]:hover {
-  background: var(--nc-lk-2);
-}
-
-code,
-pre,
-kbd,
-samp {
-  /* Set the font family for monospaced elements */
-  font-family: var(--nc-font-mono);
-}
-
-code,
-samp,
-kbd,
-pre {
-  /* The main preformatted style. This is changed slightly across different cases. */
-  background: var(--nc-bg-2);
-  border: 1px solid var(--nc-bg-3);
-  border-radius: 4px;
-  padding: 3px 6px;
-  font-size: 0.9rem;
-}
-
-kbd {
-  /* Makes the kbd element look like a keyboard key */
-  border-bottom: 3px solid var(--nc-bg-3);
+pre, code {
+    font-family: x, monospace;
 }
 
 pre {
-  padding: 1rem 1.4rem;
-  max-width: 100%;
-  overflow: auto;
+    padding: 1ex;
+    background: #eee;
+    border: solid 1px #ddd;
+    min-width: 0;
+    font-size: 80%;
+    overflow: auto;
 }
 
-pre code {
-  /* When <code> is in a <pre>, reset it's formatting to blend in */
-  background: inherit;
-  font-size: inherit;
-  color: inherit;
-  border: 0;
-  padding: 0;
-  margin: 0;
-}
-
-code pre {
-  /* When <pre> is in a <code>, reset it's formatting to blend in */
-  display: inline;
-  background: inherit;
-  font-size: inherit;
-  color: inherit;
-  border: 0;
-  padding: 0;
-  margin: 0;
-}
-
-details {
-  /* Make the <details> look more "clickable" */
-  padding: 0.6rem 1rem;
-  background: var(--nc-bg-2);
-  border: 1px solid var(--nc-bg-3);
-  border-radius: 4px;
-}
-
-summary {
-  /* Makes the <summary> look more like a "clickable" link with the pointer cursor */
-  cursor: pointer;
-  font-weight: bold;
-}
-
-details[open] {
-  /* Adjust the <details> padding while open */
-  padding-bottom: 0.75rem;
-}
-
-details[open] summary {
-  /* Adjust the <details> padding while open */
-  margin-bottom: 6px;
-}
-
-details[open] > *:last-child {
-  /* Resets the bottom margin of the last element in the <details> while <details> is opened. This prevents double margins/paddings. */
-  margin-bottom: 0;
-}
-
-dt {
-  font-weight: bold;
-}
-
-dd::before {
-  /* Add an arrow to data table definitions */
-  content: "→ ";
-}
-
-hr {
-  /* Reset the border of the <hr> separator, then set a better line */
-  border: 0;
-  border-bottom: 1px solid var(--nc-bg-3);
-  margin: 1rem auto;
-}
-
-fieldset {
-  margin-top: 1rem;
-  padding: 2rem;
-  border: 1px solid var(--nc-bg-3);
-  border-radius: 4px;
-}
-
-legend {
-  padding: auto 0.5rem;
-}
-
-textarea {
-  /* Don't let the <textarea> extend off the screen naturally or when dragged by the user */
-  max-width: 100%;
-}
-
-ol,
-ul {
-  /* Replace the browser default padding */
-  padding-left: 2rem;
-}
-
-li {
-  margin-top: 0.4rem;
-}
-
-ul ul,
-ol ul,
-ul ol,
-ol ol {
-  margin-bottom: 0;
-}
-
-mark {
-  padding: 3px 6px;
-  background: var(--nc-ac-1);
-  color: var(--nc-ac-tx);
-}
-
-textarea,
-select,
-input {
-  padding: 6px 12px;
-  margin-bottom: 0.5rem;
-  background: var(--nc-bg-2);
-  color: var(--nc-tx-2);
-
-  /* Set a border of the same color as the main background. It isn't visible on idle, but prevents the cell from growing in size when a darker border is set on focus. */
-  border: 1px solid var(--nc-bg-2);
-  border-radius: 4px;
-  box-shadow: none;
-  box-sizing: border-box;
-}
-
-textarea:focus,
-select:focus,
-input[type]:focus {
-  border: 1px solid var(--nc-bg-3);
-
-  /* Reset any browser default outlines */
-  outline: 0;
+code {
+    color: var(--code);
 }
 
 img {
-  max-width: 100%;
+    max-width: 100%;
 }
 
-/* Customizations */
-.menu-comment {
-  font-weight: bold;
-  border: 0;
-  margin: 0;
-  padding: 0;
-  font-size: 1.2rem;
+table {
+  border-collapse: collapse;
+  width: 100%;
+}
+
+pre.menu-comment {
+  background: none;
+  border: none;
+  font-family: sans-serif;
+  padding: 0;
+  margin: 0;
+  font-size: 100%;
+}
+
+thead {
+  border-bottom: 1px solid var(--border);
+}
+
+tfoot {
+  border-top: 1px solid var(--border);
+}
+
+blockquote {
+  margin-left: 1rem;
+  font-style: italic;
+  font-family: serif;
+  border-left: 3px solid;
+  border-left-color: currentcolor;
+  border-color: var(--text-color);
+  padding-left: 1em;
 }

doc/css/styles.css

@@ -0,0 +1,85 @@
+body {
+  margin: 20px;
+  background: #303030;
+  color: #f5f5f5;
+  font-size: 1.6rem;
+  font-weight: 300;
+}
+
+.container {
+  max-width: 800px;
+}
+
+.nav {
+  margin-top: 5rem;
+}
+
+.nav-item a {
+  /* color: #797979; */
+  color: #bebebe;
+  text-decoration: none;
+  font-family: "Consolas", "Monaco", "Menlo", monospace;
+}
+
+.nav-item a:hover {
+  cursor: pointer;
+  /* color: #4d4a4a; */
+  color: #dcdcdc;
+  border: none;
+}
+
+.hero {
+  color: #f5f5f5;
+}
+
+.hero div {
+  margin-bottom: 5rem;
+}
+
+.hero h3 {
+  /* font-family: "Edelsans", sans-serif; */
+  font-size: 5rem;
+  margin-bottom: 0;
+}
+
+.hero h5 {
+  margin-top: 1rem;
+  margin-bottom: 0;
+  /* font-weight: 200; */
+  font-weight: 250;
+}
+
+.grid-demo-col {
+  background: #e4e4e4;
+}
+
+a {
+  color: #cd86ff;
+}
+
+a:hover {
+  color: #dbb9f3;
+}
+
+img {
+  max-width: 100%;
+}
+
+.footer-links {
+  font-size: 1.5rem;
+  color: #f5f5f5;
+  text-decoration: none;
+  font-weight: 250;
+}
+
+.header {
+  font-weight: 200;
+}
+
+#footer {
+  margin-bottom: 3rem;
+}
+
+#footer h5 {
+  margin-bottom: 1.5rem;
+}

doc/index.html

@@ -1,3 +1,168 @@
-<html>
-  <h1>--> <a href="manual/index.html">MANUAL HERE</a> <--</h1>
+<!DOCTYPE html>
+<html lang="en">
+  <head>
+    <meta charset="utf-8" />
+    <meta http-equiv="X-UA-Compatible" content="IE=edge" />
+    <meta name="viewport" content="width=device-width, initial-scale=1" />
+    <meta name="description" content="An Effortless PKM System." />
+    <meta name="author" content="Org-roam Contributors" />
+
+    <title>Org-roam</title>
+
+    <link rel="stylesheet" href="https://unpkg.com/wingcss" />
+    <link rel="stylesheet" type="text/css" href="./css/styles.css" />
+
+    <script src="https://code.iconify.design/1/1.0.6/iconify.min.js"></script>
+  </head>
+
+  <body>
+    <section class="hero container center text-center">
+      <div>
+        <img src="./img/logo.png" alt="Org-roam Logo" height="200" />
+        <h3>Org-roam</h3>
+        <h5>A plain-text personal knowledge management system.</h5>
+      </div>
+    </section>
+
+    <section class="container center">
+      <div>
+        <img src="./img/screenshot.png" alt="screenshot" />
+      </div>
+    </section>
+
+    <section id="features" class="container center">
+      <div>
+        <h3 class="header">FEATURES</h3>
+        <div class="row">
+          <div class="col">
+            <h5 class="left">
+              <iconify-icon data-icon="fxemoji:lock"></iconify-icon> &nbsp;
+              Private and Secure
+            </h5>
+            <p class="content">
+              Edit your personal wiki completely offline, entirely in your
+              control. Encrypt your notes with GPG. Take lasting notes in
+              plain-text.
+            </p>
+          </div>
+          <div class="col">
+            <h5 class="left">
+              <iconify-icon data-icon="flat-color-icons:link"></iconify-icon>
+              &nbsp; Make Connections
+            </h5>
+            <p class="content">
+              Connect notes and thoughts together with ease using backlinks.
+              Discover surprising and previously unseen connections in your
+              notes with the built-in graph visualization.
+            </p>
+          </div>
+        </div>
+
+        <div class="row">
+          <div class="col">
+            <h5 class="left">
+              <iconify-icon data-icon="twemoji:puzzle-piece"></iconify-icon>
+              &nbsp; Extensible and Powerful
+            </h5>
+            <p class="content">
+              Leverage Emacs' fantastic text-editing interface, and the mature
+              Emacs and Org-mode ecosystem of packages.
+            </p>
+          </div>
+          <div class="col">
+            <h5 class="left">
+              <iconify-icon data-icon="logos:git-icon"></iconify-icon> &nbsp;
+              Free and Open Source
+            </h5>
+            <p class="content">
+              Org-roam is licensed under the GNU General Public License version
+              3 or later. You are free to extend its functionality and
+              contribute back. Find
+              us <a href="https://github.com/org-roam/org-roam">here</a>.
+            </p>
+          </div>
+        </div>
+      </div>
+    </section>
+    
+    <section id="links" class="container">
+      <div>
+        <h3 class="header">LINKS</h3> New to Emacs and Org-mode, and trying to
+        find your way around? Org-roam has an inclusive community of users
+        passionate about Personal Knowledge Management -- we're happy to help!
+        You can find us on Discourse and Slack.
+        
+        <ul>
+            <li>Read our documentation within Emacs, or on the <a href="https://www.orgroam.com/manual.html">Online Manual</a></li>
+            <li>Participate in our forum discussions on <a href="https://org-roam.discourse.group">Discourse</a></li>
+            <li>Chat with us on <a href="https://join.slack.com/t/orgroam/shared_invite/zt-wuoize1z-x3UyQnQ0WHF0RhuEQ2NLnQ">Slack</a></li>
+          </ul>
+      </div>
+    </section>
+
+    <section id="footer" class="row container">
+      <div class="col">
+        <div class="row">
+          <h5 class="header">Ecosystem</h5>
+        </div>
+
+        <div class="row">
+          <a
+            class="content footer-links"
+            href="https://github.com/org-roam/org-roam-bibtex"
+            >org-roam-bibtex</a
+          >
+        </div>
+        <div class="row">
+          <a
+            class="content footer-links"
+            href="https://github.com/org-roam/org-roam-ui"
+            >org-roam-ui</a
+          >
+        </div>
+      </div>
+
+      <div class="col">
+        <div class="row">
+          <h5 class="header">Resources</h5>
+        </div>
+
+        <div class="row">
+          <a
+            class="content footer-links"
+            href="https://github.com/org-roam/org-roam/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc"
+            >Open Issues</a
+          >
+        </div>
+        <div class="row">
+          <a
+            class="content footer-links"
+            href="https://github.com/org-roam/org-roam/releases"
+            >Releases</a
+          >
+        </div>
+      </div>
+
+      <div class="col">
+        <div class="row">
+          <h5 class="header">Connect</h5>
+        </div>
+
+        <div class="row">
+          <a
+            class="content footer-links"
+            href="https://join.slack.com/t/orgroam/shared_invite/zt-wuoize1z-x3UyQnQ0WHF0RhuEQ2NLnQ"
+            >Slack</a
+          >
+        </div>
+        <div class="row">
+          <a
+            class="content footer-links"
+            href="https://org-roam.discourse.group/"
+            >Discourse</a
+          >
+        </div>
+      </div>
+    </section>
+  </body>
 </html>

extensions/org-roam-dailies.el

@@ -0,0 +1,366 @@
+;;; org-roam-dailies.el --- Daily-notes for Org-roam -*- coding: utf-8; lexical-binding: t; -*-
+;;;
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+;; Copyright © 2020 Leo Vivier <leo.vivier+dev@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;;      Leo Vivier <leo.vivier+dev@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org-roam "2.1"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This extension provides functionality for creating daily-notes, or shortly
+;; "dailies". Dailies implemented here as a unique node per unique file, where
+;; each file named after certain date and stored in `org-roam-dailies-directory'.
+;;
+;; One can use dailies for various purposes, e.g. journaling, fleeting notes,
+;; scratch notes or whatever else you can think of.
+;;
+;;; Code:
+(require 'dash)
+(require 'org-roam)
+
+;;; Faces
+(defface org-roam-dailies-calendar-note
+  '((t :inherit (org-link) :underline nil))
+  "Face for dates with a daily-note in the calendar."
+  :group 'org-roam-faces)
+
+;;; Options
+(defcustom org-roam-dailies-directory "daily/"
+  "Path to daily-notes.
+This path is relative to `org-roam-directory'."
+  :group 'org-roam
+  :type 'string)
+
+(defcustom org-roam-dailies-find-file-hook nil
+  "Hook that is run right after navigating to a daily-note."
+  :group 'org-roam
+  :type 'hook)
+
+(defcustom org-roam-dailies-capture-templates
+  `(("d" "default" entry
+     "* %?"
+     :target (file+head "%<%Y-%m-%d>.org"
+                        "#+title: %<%Y-%m-%d>\n")))
+  "Capture templates for daily-notes in Org-roam.
+Note that for daily files to show up in the calendar, they have to be of format
+\"org-time-string.org\".
+See `org-roam-capture-templates' for the template documentation."
+  :group 'org-roam
+  :type '(repeat
+          (choice (list :tag "Multikey description"
+                        (string :tag "Keys       ")
+                        (string :tag "Description"))
+                  (list :tag "Template entry"
+                        (string :tag "Keys           ")
+                        (string :tag "Description    ")
+                        (choice :tag "Capture Type   " :value entry
+                                (const :tag "Org entry" entry)
+                                (const :tag "Plain list item" item)
+                                (const :tag "Checkbox item" checkitem)
+                                (const :tag "Plain text" plain)
+                                (const :tag "Table line" table-line))
+                        (choice :tag "Template       "
+                                (string)
+                                (list :tag "File"
+                                      (const :format "" file)
+                                      (file :tag "Template file"))
+                                (list :tag "Function"
+                                      (const :format "" function)
+                                      (function :tag "Template function")))
+                        (plist :inline t
+                               ;; Give the most common options as checkboxes
+                               :options (((const :format "%v " :target)
+                                          (choice :tag "Node location"
+                                                  (list :tag "File"
+                                                        (const :format "" file)
+                                                        (string :tag "  File"))
+                                                  (list :tag "File & Head Content"
+                                                        (const :format "" file+head)
+                                                        (string :tag "  File")
+                                                        (string :tag "  Head Content"))
+                                                  (list :tag "File & Outline path"
+                                                        (const :format "" file+olp)
+                                                        (string :tag "  File")
+                                                        (list :tag "Outline path"
+                                                              (repeat (string :tag "Headline"))))
+                                                  (list :tag "File & Head Content & Outline path"
+                                                        (const :format "" file+head+olp)
+                                                        (string :tag "  File")
+                                                        (string :tag "  Head Content")
+                                                        (list :tag "Outline path"
+                                                              (repeat (string :tag "Headline"))))))
+                                         ((const :format "%v " :prepend) (const t))
+                                         ((const :format "%v " :immediate-finish) (const t))
+                                         ((const :format "%v " :jump-to-captured) (const t))
+                                         ((const :format "%v " :empty-lines) (const 1))
+                                         ((const :format "%v " :empty-lines-before) (const 1))
+                                         ((const :format "%v " :empty-lines-after) (const 1))
+                                         ((const :format "%v " :clock-in) (const t))
+                                         ((const :format "%v " :clock-keep) (const t))
+                                         ((const :format "%v " :clock-resume) (const t))
+                                         ((const :format "%v " :time-prompt) (const t))
+                                         ((const :format "%v " :tree-type) (const week))
+                                         ((const :format "%v " :unnarrowed) (const t))
+                                         ((const :format "%v " :table-line-pos) (string))
+                                         ((const :format "%v " :kill-buffer) (const t))))))))
+
+;;; Commands
+;;;; Today
+;;;###autoload
+(defun org-roam-dailies-capture-today (&optional goto keys)
+  "Create an entry in the daily-note for today.
+When GOTO is non-nil, go the note without creating an entry.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive "P")
+  (org-roam-dailies--capture (current-time) goto keys))
+
+;;;###autoload
+(defun org-roam-dailies-goto-today (&optional keys)
+  "Find the daily-note for today, creating it if necessary.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive)
+  (org-roam-dailies-capture-today t keys))
+
+;;;; Tomorrow
+;;;###autoload
+(defun org-roam-dailies-capture-tomorrow (n &optional goto keys)
+  "Create an entry in the daily-note for tomorrow.
+
+With numeric argument N, use the daily-note N days in the future.
+
+With a `C-u' prefix or when GOTO is non-nil, go the note without
+creating an entry.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive "p")
+  (org-roam-dailies--capture (time-add (* n 86400) (current-time)) goto keys))
+
+;;;###autoload
+(defun org-roam-dailies-goto-tomorrow (n &optional keys)
+  "Find the daily-note for tomorrow, creating it if necessary.
+
+With numeric argument N, use the daily-note N days in the
+future.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive "p")
+  (org-roam-dailies-capture-tomorrow n t keys))
+
+;;;; Yesterday
+;;;###autoload
+(defun org-roam-dailies-capture-yesterday (n &optional goto keys)
+  "Create an entry in the daily-note for yesteday.
+
+With numeric argument N, use the daily-note N days in the past.
+
+When GOTO is non-nil, go the note without creating an entry.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive "p")
+  (org-roam-dailies-capture-tomorrow (- n) goto keys))
+
+;;;###autoload
+(defun org-roam-dailies-goto-yesterday (n &optional keys)
+  "Find the daily-note for yesterday, creating it if necessary.
+
+With numeric argument N, use the daily-note N days in the
+future.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive "p")
+  (org-roam-dailies-capture-tomorrow (- n) t keys))
+
+;;;; Date
+;;;###autoload
+(defun org-roam-dailies-capture-date (&optional goto prefer-future keys)
+  "Create an entry in the daily-note for a date using the calendar.
+Prefer past dates, unless PREFER-FUTURE is non-nil.
+With a `C-u' prefix or when GOTO is non-nil, go the note without
+creating an entry.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive "P")
+  (let ((time (let ((org-read-date-prefer-future prefer-future))
+                (org-read-date nil t nil (if goto
+                                             "Find daily-note: "
+                                           "Capture to daily-note: ")))))
+    (org-roam-dailies--capture time goto keys)))
+
+;;;###autoload
+(defun org-roam-dailies-goto-date (&optional prefer-future keys)
+  "Find the daily-note for a date using the calendar, creating it if necessary.
+Prefer past dates, unless PREFER-FUTURE is non-nil.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (interactive)
+  (org-roam-dailies-capture-date t prefer-future keys))
+
+;;;; Navigation
+(defun org-roam-dailies-goto-next-note (&optional n)
+  "Find next daily-note.
+
+With numeric argument N, find note N days in the future. If N is
+negative, find note N days in the past."
+  (interactive "p")
+  (unless (org-roam-dailies--daily-note-p)
+    (user-error "Not in a daily-note"))
+  (setq n (or n 1))
+  (let* ((dailies (org-roam-dailies--list-files))
+         (position
+          (cl-position-if (lambda (candidate)
+                            (string= (buffer-file-name (buffer-base-buffer)) candidate))
+                          dailies))
+         note)
+    (unless position
+      (user-error "Can't find current note file - have you saved it yet?"))
+    (pcase n
+      ((pred (natnump))
+       (when (eq position (- (length dailies) 1))
+         (user-error "Already at newest note")))
+      ((pred (integerp))
+       (when (eq position 0)
+         (user-error "Already at oldest note"))))
+    (setq note (nth (+ position n) dailies))
+    (find-file note)
+    (run-hooks 'org-roam-dailies-find-file-hook)))
+
+(defun org-roam-dailies-goto-previous-note (&optional n)
+  "Find previous daily-note.
+
+With numeric argument N, find note N days in the past. If N is
+negative, find note N days in the future."
+  (interactive "p")
+  (let ((n (if n (- n) -1)))
+    (org-roam-dailies-goto-next-note n)))
+
+(defun org-roam-dailies--list-files (&rest extra-files)
+  "List all files in `org-roam-dailies-directory'.
+EXTRA-FILES can be used to append extra files to the list."
+  (let ((dir (expand-file-name org-roam-dailies-directory org-roam-directory))
+        (regexp (rx-to-string `(and "." (or ,@org-roam-file-extensions)))))
+    (append (--remove (let ((file (file-name-nondirectory it)))
+                        (when (or (auto-save-file-name-p file)
+                                  (backup-file-name-p file)
+                                  (string-match "^\\." file))
+                          it))
+                      (directory-files-recursively dir regexp))
+            extra-files)))
+
+(defun org-roam-dailies--daily-note-p (&optional file)
+  "Return t if FILE is an Org-roam daily-note, nil otherwise.
+If FILE is not specified, use the current buffer's file-path."
+  (when-let ((path (expand-file-name
+                    (or file
+                        (buffer-file-name (buffer-base-buffer)))))
+             (directory (expand-file-name org-roam-dailies-directory org-roam-directory)))
+    (setq path (expand-file-name path))
+    (save-match-data
+      (and
+       (org-roam-file-p path)
+       (org-roam-descendant-of-p path directory)))))
+
+;;;###autoload
+(defun org-roam-dailies-find-directory ()
+  "Find and open `org-roam-dailies-directory'."
+  (interactive)
+  (find-file (expand-file-name org-roam-dailies-directory org-roam-directory)))
+
+;;; Calendar integration
+(defun org-roam-dailies-calendar--file-to-date (file)
+  "Convert FILE to date.
+Return (MONTH DAY YEAR) or nil if not an Org time-string."
+  (ignore-errors
+    (cl-destructuring-bind (_ _ _ d m y _ _ _)
+        (org-parse-time-string
+         (file-name-sans-extension
+          (file-name-nondirectory file)))
+      (list m d y))))
+
+(defun org-roam-dailies-calendar-mark-entries ()
+  "Mark days in the calendar for which a daily-note is present."
+  (when (file-exists-p (expand-file-name org-roam-dailies-directory org-roam-directory))
+    (dolist (date (remove nil
+                          (mapcar #'org-roam-dailies-calendar--file-to-date
+                                  (org-roam-dailies--list-files))))
+      (when (calendar-date-is-visible-p date)
+        (calendar-mark-visible-date date 'org-roam-dailies-calendar-note)))))
+
+(add-hook 'calendar-today-visible-hook #'org-roam-dailies-calendar-mark-entries)
+(add-hook 'calendar-today-invisible-hook #'org-roam-dailies-calendar-mark-entries)
+
+;;; Capture implementation
+(add-to-list 'org-roam-capture--template-keywords :override-default-time)
+
+(defun org-roam-dailies--capture (time &optional goto keys)
+  "Capture an entry in a daily-note for TIME, creating it if necessary.
+When GOTO is non-nil, go the note without creating an entry.
+
+ELisp programs can set KEYS to a string associated with a template.
+In this case, interactive selection will be bypassed."
+  (let ((org-roam-directory (expand-file-name org-roam-dailies-directory org-roam-directory))
+        (org-roam-dailies-directory "./"))
+    (org-roam-capture- :goto (when goto '(4))
+                       :keys keys
+                       :node (org-roam-node-create)
+                       :templates org-roam-dailies-capture-templates
+                       :props (list :override-default-time time)))
+  (when goto (run-hooks 'org-roam-dailies-find-file-hook)))
+
+(add-hook 'org-roam-capture-preface-hook #'org-roam-dailies--override-capture-time-h)
+(defun org-roam-dailies--override-capture-time-h ()
+  "Override the `:default-time' with the time from `:override-default-time'."
+  (prog1 nil
+    (when (org-roam-capture--get :override-default-time)
+      (org-capture-put :default-time (org-roam-capture--get :override-default-time)))))
+
+;;; Bindings
+(defvar org-roam-dailies-map (make-sparse-keymap)
+  "Keymap for `org-roam-dailies'.")
+
+(define-prefix-command 'org-roam-dailies-map)
+
+(define-key org-roam-dailies-map (kbd "d") #'org-roam-dailies-goto-today)
+(define-key org-roam-dailies-map (kbd "y") #'org-roam-dailies-goto-yesterday)
+(define-key org-roam-dailies-map (kbd "t") #'org-roam-dailies-goto-tomorrow)
+(define-key org-roam-dailies-map (kbd "n") #'org-roam-dailies-capture-today)
+(define-key org-roam-dailies-map (kbd "f") #'org-roam-dailies-goto-next-note)
+(define-key org-roam-dailies-map (kbd "b") #'org-roam-dailies-goto-previous-note)
+(define-key org-roam-dailies-map (kbd "c") #'org-roam-dailies-goto-date)
+(define-key org-roam-dailies-map (kbd "v") #'org-roam-dailies-capture-date)
+(define-key org-roam-dailies-map (kbd ".") #'org-roam-dailies-find-directory)
+
+(provide 'org-roam-dailies)
+
+;;; org-roam-dailies.el ends here

extensions/org-roam-export.el

@@ -0,0 +1,75 @@
+;;; org-roam-export.el --- Org-roam org-export tweaks -*- coding: utf-8; lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This package provides the necessary changes required to make org-export work out-of-the-box.
+;;
+;; To enable it, run:
+;;
+;;    (require 'org-roam-export)
+;;
+;; The key issue Org's export-to-html functionality has is that it does not respect the ID property, which
+;; Org-roam relies heavily on. This patches the necessary function in ox-html to export ID links correctly,
+;; pointing to the correct place.
+;;
+;;; Code:
+(require 'ox-html)
+
+(defun org-roam-export--org-html--reference (datum info &optional named-only)
+  "Org-roam's patch for `org-html--reference' to support ID link export.
+See `org-html--reference' for DATUM, INFO and NAMED-ONLY."
+  (let* ((type (org-element-type datum))
+         (user-label
+          (org-element-property
+           (pcase type
+             ((or `headline `inlinetask) :CUSTOM_ID)
+             ((or `radio-target `target) :value)
+             (_ :name))
+           datum))
+         (user-label
+          (or user-label
+              (when-let ((path (org-element-property :ID datum)))
+                ;; see `org-html-link' for why we use "ID-"
+                ;; (search for "ID-" in ox-html.el)
+                (concat "ID-" path)))))
+    (cond
+     ((and user-label
+           (or (plist-get info :html-prefer-user-labels)
+               (memq type '(headline inlinetask))))
+      user-label)
+     ((and named-only
+           (not (memq type '(headline inlinetask radio-target target)))
+           (not user-label))
+      nil)
+     (t
+      (org-export-get-reference datum info)))))
+
+(advice-add 'org-html--reference :override #'org-roam-export--org-html--reference)
+
+(provide 'org-roam-export)
+;;; org-roam-export.el ends here

extensions/org-roam-graph.el

@@ -0,0 +1,302 @@
+;;; org-roam-graph.el --- Basic graphing functionality for Org-roam -*- coding: utf-8; lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This extension implements capability to build and generate graphs in Org-roam
+;; with the help of Graphviz.
+;;
+;;; Code:
+(require 'xml) ;xml-escape-string
+(require 'org-roam)
+
+;;; Options
+(defcustom org-roam-graph-viewer (executable-find "firefox")
+  "Method to view the org-roam graph.
+It may be one of the following:
+  - a string representing the path to the executable for viewing the graph.
+  - a function accepting a single argument: the graph file path.
+  - nil uses `view-file' to view the graph."
+  :type '(choice
+          (string   :tag "Path to executable")
+          (function :tag "Function to display graph" eww-open-file)
+          (const    :tag "view-file"))
+  :group 'org-roam)
+
+(defcustom org-roam-graph-executable "dot"
+  "Path to graphing executable, or its name."
+  :type 'string
+  :group 'org-roam)
+
+(defcustom org-roam-graph-filetype "svg"
+  "File type to generate when producing graphs."
+  :type 'string
+  :group 'org-roam)
+
+
+(defcustom org-roam-graph-extra-config nil
+  "Extra options passed to graphviz.
+Example:
+ '((\"rankdir\" . \"LR\"))"
+  :type '(alist)
+  :group 'org-roam)
+
+(defcustom org-roam-graph-edge-extra-config nil
+  "Extra edge options passed to graphviz.
+Example:
+ '((\"dir\" . \"back\"))"
+  :type '(alist)
+  :group 'org-roam)
+
+(defcustom org-roam-graph-node-extra-config
+  '(("id" . (("style"      . "bold,rounded,filled")
+             ("fillcolor"  . "#EEEEEE")
+             ("color"      . "#C9C9C9")
+             ("fontcolor"  . "#111111")))
+    ("http" . (("style"      . "rounded,filled")
+               ("fillcolor"  . "#EEEEEE")
+               ("color"      . "#C9C9C9")
+               ("fontcolor"  . "#0A97A6")))
+    ("https" . (("style"      . "rounded,filled")
+                ("fillcolor"  . "#EEEEEE")
+                ("color"      . "#C9C9C9")
+                ("fontcolor"  . "#0A97A6"))))
+  "Extra options for graphviz nodes."
+  :type '(alist)
+  :group 'org-roam)
+
+(defcustom org-roam-graph-link-hidden-types
+  '("file")
+  "What sort of links to hide from the Org-roam graph."
+  :type '(repeat string)
+  :group 'org-roam)
+
+(defcustom org-roam-graph-max-title-length 100
+  "Maximum length of titles in graph nodes."
+  :type 'number
+  :group 'org-roam)
+
+(defcustom org-roam-graph-shorten-titles 'truncate
+  "Determines how long titles appear in graph nodes.
+Recognized values are the symbols `truncate' and `wrap', in which
+cases the title will be truncated or wrapped, respectively, if it
+is longer than `org-roam-graph-max-title-length'.
+
+All other values including nil will have no effect."
+  :type '(choice
+          (const :tag "truncate" truncate)
+          (const :tag "wrap" wrap)
+          (const :tag "no" nil))
+  :group 'org-roam)
+
+(defcustom org-roam-graph-link-builder 'org-roam-org-protocol-link-builder
+  "Function used to build the Org-roam graph links.
+Given a node name, return a string to be used for the link fed to
+the graph generation utility."
+  :type 'function
+  :group 'org-roam)
+
+(defcustom org-roam-graph-generation-hook nil
+  "Functions to run after the graph has been generated.
+Each function is called with two arguments: the filename
+containing the graph generation tool, and the generated graph."
+  :type 'hook
+  :group 'org-roam)
+
+(defun org-roam-org-protocol-link-builder (node)
+  "Default org-roam link builder.  Generate an org-protocol link using NODE."
+  (concat "org-protocol://roam-node?node="
+          (url-hexify-string (org-roam-node-id node))))
+
+;;; Interactive command
+;;;###autoload
+(defun org-roam-graph (&optional arg node)
+  "Build and possibly display a graph for NODE.
+ARG may be any of the following values:
+  - nil       show the graph.
+  - `\\[universal-argument]'     show the graph for NODE.
+  - `\\[universal-argument]' N   show the graph for NODE limiting nodes to N steps."
+  (interactive
+   (list current-prefix-arg
+         (and current-prefix-arg
+              (org-roam-node-at-point 'assert))))
+  (let ((graph (cl-typecase arg
+                 (null (org-roam-graph--dot nil 'all-nodes))
+                 (cons (org-roam-graph--dot (org-roam-graph--connected-component
+                                             (org-roam-node-id node) 0)))
+                 (integer (org-roam-graph--dot (org-roam-graph--connected-component
+                                                (org-roam-node-id node) (abs arg)))))))
+    (org-roam-graph--build graph #'org-roam-graph--open)))
+
+;;; Generation and Build process
+(defun org-roam-graph--build (graph &optional callback)
+  "Generate the GRAPH, and execute CALLBACK when process exits successfully.
+CALLBACK is passed the graph file as its sole argument."
+  (unless (stringp org-roam-graph-executable)
+    (user-error "`org-roam-graph-executable' is not a string"))
+  (unless (executable-find org-roam-graph-executable)
+    (user-error (concat "Cannot find executable \"%s\" to generate the graph.  "
+                        "Please adjust `org-roam-graph-executable'")
+                org-roam-graph-executable))
+  (let* ((temp-dot   (make-temp-file "graph." nil ".dot" graph))
+         (temp-graph (make-temp-file "graph." nil (concat "." org-roam-graph-filetype))))
+    (org-roam-message "building graph")
+    (make-process
+     :name "*org-roam-graph*"
+     :buffer " *org-roam-graph*"
+     :command `(,org-roam-graph-executable ,temp-dot "-T" ,org-roam-graph-filetype "-o" ,temp-graph)
+     :sentinel (when callback
+                 (lambda (process _event)
+                   (when (= 0 (process-exit-status process))
+                     (progn (funcall callback temp-graph)
+                            (run-hook-with-args 'org-roam-graph-generation-hook temp-dot temp-graph))))))))
+
+(defun org-roam-graph--dot (&optional edges all-nodes)
+  "Build the graphviz given the EDGES of the graph.
+If ALL-NODES, include also nodes without edges."
+  (let ((org-roam-directory-temp org-roam-directory)
+        (nodes-table (make-hash-table :test #'equal))
+        (seen-nodes (list))
+        (edges (or edges (org-roam-db-query [:select :distinct [source dest type] :from links]))))
+    (pcase-dolist (`(,id ,file ,title)
+                   (org-roam-db-query [:select [id file title] :from nodes]))
+      (puthash id (org-roam-node-create :file file :id id :title title) nodes-table))
+    (with-temp-buffer
+      (setq-local org-roam-directory org-roam-directory-temp)
+      (insert "digraph \"org-roam\" {\n")
+      (dolist (option org-roam-graph-extra-config)
+        (insert (org-roam-graph--dot-option option) ";\n"))
+      (insert (format " edge [%s];\n"
+                      (mapconcat (lambda (var)
+                                   (org-roam-graph--dot-option var nil "\""))
+                                 org-roam-graph-edge-extra-config
+                                 ",")))
+      (pcase-dolist (`(,source ,dest ,type) edges)
+        (unless (member type org-roam-graph-link-hidden-types)
+          (pcase-dolist (`(,node ,node-type) `((,source "id")
+                                               (,dest ,type)))
+            (unless (member node seen-nodes)
+              (insert (org-roam-graph--format-node
+                       (or (gethash node nodes-table) node) node-type))
+              (push node seen-nodes)))
+          (insert (format "  \"%s\" -> \"%s\";\n"
+                          (xml-escape-string source)
+                          (xml-escape-string dest)))))
+      (when all-nodes
+        (maphash (lambda (id node)
+                   (unless (member id seen-nodes)
+                     (insert (org-roam-graph--format-node node "id"))))
+                 nodes-table))
+      (insert "}")
+      (buffer-string))))
+
+(defun org-roam-graph--connected-component (id distance)
+  "Return the edges for all nodes reachable from/connected to ID.
+DISTANCE is the maximum distance away from the root node."
+  (let* ((query
+          (if (= distance 0)
+              "
+WITH RECURSIVE
+  links_of(source, dest) AS
+  (SELECT source, dest FROM links UNION
+   SELECT dest, source FROM links),
+   connected_component(source) AS
+  (SELECT dest FROM links_of WHERE source = $s1 UNION
+   SELECT dest FROM links_of JOIN connected_component USING(source))
+SELECT DISTINCT source, dest, type FROM links
+WHERE source IN connected_component OR dest IN connected_component;"
+            "
+WITH RECURSIVE
+  links_of(source, dest) AS
+  (SELECT source, dest FROM links UNION
+   SELECT dest, source FROM links),
+  connected_component(source, trace) AS
+  (VALUES ($s1 , json_array($s1)) UNION
+   SELECT lo.dest, json_insert(cc.trace, '$[' || json_array_length(cc.trace) || ']', lo.dest) FROM
+   connected_component AS cc JOIN links_of AS lo USING(source)
+   WHERE (
+    -- Avoid cycles by only visiting each node once.
+    (SELECT count(*) FROM json_each(cc.trace) WHERE json_each.value == lo.dest) == 0
+    -- Note: BFS is cut off early here.
+    AND json_array_length(cc.trace) < $s2)),
+  nodes(source) as (SELECT DISTINCT source
+   FROM connected_component GROUP BY source ORDER BY min(json_array_length(trace)))
+SELECT DISTINCT source, dest, type FROM links WHERE source IN nodes OR dest IN nodes;")))
+    (org-roam-db-query query id distance)))
+
+(defun org-roam-graph--dot-option (option &optional wrap-key wrap-val)
+  "Return dot string of form KEY=VAL for OPTION cons.
+If WRAP-KEY is non-nil it wraps the KEY.
+If WRAP-VAL is non-nil it wraps the VAL."
+  (concat wrap-key (car option) wrap-key
+          "="
+          wrap-val (cdr option) wrap-val))
+
+(defun org-roam-graph--format-node (node type)
+  "Return a graphviz NODE with TYPE.
+Handles both Org-roam nodes, and string nodes (e.g. urls)."
+  (let (node-id node-properties)
+    (if (org-roam-node-p node)
+        (let* ((title (org-roam-quote-string (org-roam-node-title node)))
+               (shortened-title
+                (org-roam-quote-string
+                 (pcase org-roam-graph-shorten-titles
+                   (`truncate (truncate-string-to-width title org-roam-graph-max-title-length nil nil "..."))
+                   (`wrap (org-roam-word-wrap org-roam-graph-max-title-length title))
+                   (_ title)))))
+          (setq node-id (org-roam-node-id node)
+                node-properties `(("label"   . ,shortened-title)
+                                  ("URL"     . ,(funcall org-roam-graph-link-builder node))
+                                  ("tooltip" . ,(xml-escape-string title)))))
+      (setq node-id node
+            node-properties (append `(("label" . ,(concat type ":" node)))
+                                    (when (member type (list "http" "https"))
+                                      `(("URL" . ,(xml-escape-string (concat type ":" node))))))))
+    (format "\"%s\" [%s];\n"
+            node-id
+            (mapconcat (lambda (n)
+                         (org-roam-graph--dot-option n nil "\""))
+                       (append (cdr (assoc type org-roam-graph-node-extra-config))
+                               node-properties) ","))))
+
+(defun org-roam-graph--open (file)
+  "Open FILE using `org-roam-graph-viewer' with `view-file' as a fallback."
+  (pcase org-roam-graph-viewer
+    ((pred stringp)
+     (if (executable-find org-roam-graph-viewer)
+         (condition-case err
+             (call-process org-roam-graph-viewer nil 0 nil file)
+           (error (user-error "Failed to open org-roam graph: %s" err)))
+       (user-error "Executable not found: \"%s\"" org-roam-graph-viewer)))
+    ((pred functionp) (funcall org-roam-graph-viewer file))
+    ('nil (view-file file))
+    (_ (signal 'wrong-type-argument `((functionp stringp null) ,org-roam-graph-viewer)))))
+
+
+(provide 'org-roam-graph)
+
+;;; org-roam-graph.el ends here

extensions/org-roam-overlay.el

@@ -0,0 +1,96 @@
+;;; org-roam-overlay.el --- Link overlay for [id:] links to Org-roam nodes -*- coding: utf-8; lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This extension allows to render [[id:]] links that don't have an associated
+;; descriptor with an overlay that displays the node's current title.
+;;
+;;; Code:
+(require 'org-roam)
+
+(defface org-roam-overlay
+  '((((class color) (background light))
+     :background "grey90" :box (:line-width -1 :color "black"))
+    (((class color) (background dark))
+     :background "grey10" :box (:line-width -1 :color "white")))
+  "Face for the Org-roam overlay."
+  :group 'org-roam-faces)
+
+(defun org-roam-overlay--make (l r &rest props)
+  "Make an overlay from L to R with PROPS."
+  (let ((o (make-overlay l (or r l))))
+    (overlay-put o 'category 'org-roam)
+    (while props (overlay-put o (pop props) (pop props)))
+    o))
+
+(defun org-roam-overlay-make-link-overlay (link)
+  "Create overlay for LINK."
+  (save-excursion
+    (save-match-data
+      (let* ((type (org-element-property :type link))
+             (id (org-element-property :path link))
+             (pos (org-element-property :end link))
+             (desc-p (org-element-property :contents-begin link))
+             node)
+        (when (and (string-equal type "id")
+                   (setq node (org-roam-node-from-id id))
+                   (not desc-p))
+          (org-roam-overlay--make
+           pos pos
+           'after-string (format "%s "
+                                 (propertize (org-roam-node-title node)
+                                             'face 'org-roam-overlay))))))))
+
+(defun org-roam-overlay-enable ()
+  "Enable Org-roam overlays."
+  (org-roam-db-map-links
+   (list #'org-roam-overlay-make-link-overlay)))
+
+(defun org-roam-overlay-disable ()
+  "Disable Org-roam overlays."
+  (remove-overlays nil nil 'category 'org-roam))
+
+(defun org-roam-overlay-redisplay ()
+  "Redisplay Org-roam overlays."
+  (org-roam-overlay-disable)
+  (org-roam-overlay-enable))
+
+(define-minor-mode org-roam-overlay-mode
+  "Overlays for Org-roam ID links.
+Org-roam overlay mode is a minor mode.  When enabled,
+overlay displaying the node's title is displayed."
+  :lighter " org-roam-overlay"
+  (if org-roam-overlay-mode
+      (progn
+        (org-roam-overlay-enable)
+        (add-hook 'after-save-hook #'org-roam-overlay-redisplay nil t))
+    (org-roam-overlay-disable)
+    (remove-hook 'after-save-hook #'org-roam-overlay-redisplay t)))
+
+(provide 'org-roam-overlay)
+;;; org-roam-overlay.el ends here

extensions/org-roam-protocol.el

@@ -0,0 +1,174 @@
+;;; org-roam-protocol.el --- Protocol handler for roam:// links  -*- coding: utf-8; lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This extension extends `org-protocol', adding custom Org-roam handlers to it
+;; to provide the next new protocols:
+;;
+;; 1. "roam-node": This protocol simply opens the node given by the node ID
+;; 2. "roam-ref": This protocol creates or opens the node with the given REF
+;;
+;; You can find detailed instructions on how to setup the protocol in the
+;; documentation for Org-roam.
+;;
+;;; Code:
+(require 'org-protocol)
+(require 'ol) ;; for org-link-decode
+(require 'org-roam)
+
+;;; Options
+(defcustom org-roam-protocol-store-links nil
+  "Whether to store links when capturing websites with `org-roam-protocol'."
+  :type 'boolean
+  :group 'org-roam)
+
+(defcustom org-roam-capture-ref-templates
+  '(("r" "ref" plain "%?"
+     :target (file+head "${slug}.org"
+                        "#+title: ${title}")
+     :unnarrowed t))
+  "The Org-roam templates used during a capture from the roam-ref protocol.
+See `org-roam-capture-templates' for the template documentation."
+  :group 'org-roam
+  :type '(repeat
+          (choice (list :tag "Multikey description"
+                        (string :tag "Keys       ")
+                        (string :tag "Description"))
+                  (list :tag "Template entry"
+                        (string :tag "Keys           ")
+                        (string :tag "Description    ")
+                        (choice :tag "Capture Type   " :value entry
+                                (const :tag "Org entry" entry)
+                                (const :tag "Plain list item" item)
+                                (const :tag "Checkbox item" checkitem)
+                                (const :tag "Plain text" plain)
+                                (const :tag "Table line" table-line))
+                        (choice :tag "Template       "
+                                (string)
+                                (list :tag "File"
+                                      (const :format "" file)
+                                      (file :tag "Template file"))
+                                (list :tag "Function"
+                                      (const :format "" function)
+                                      (function :tag "Template function")))
+                        (plist :inline t
+                               ;; Give the most common options as checkboxes
+                               :options (((const :format "%v " :target)
+                                          (choice :tag "Node location"
+                                                  (list :tag "File"
+                                                        (const :format "" file)
+                                                        (string :tag "  File"))
+                                                  (list :tag "File & Head Content"
+                                                        (const :format "" file+head)
+                                                        (string :tag "  File")
+                                                        (string :tag "  Head Content"))
+                                                  (list :tag "File & Outline path"
+                                                        (const :format "" file+olp)
+                                                        (string :tag "  File")
+                                                        (list :tag "Outline path"
+                                                              (repeat (string :tag "Headline"))))
+                                                  (list :tag "File & Head Content & Outline path"
+                                                        (const :format "" file+head+olp)
+                                                        (string :tag "  File")
+                                                        (string :tag "  Head Content")
+                                                        (list :tag "Outline path"
+                                                              (repeat (string :tag "Headline"))))))
+                                         ((const :format "%v " :prepend) (const t))
+                                         ((const :format "%v " :immediate-finish) (const t))
+                                         ((const :format "%v " :jump-to-captured) (const t))
+                                         ((const :format "%v " :empty-lines) (const 1))
+                                         ((const :format "%v " :empty-lines-before) (const 1))
+                                         ((const :format "%v " :empty-lines-after) (const 1))
+                                         ((const :format "%v " :clock-in) (const t))
+                                         ((const :format "%v " :clock-keep) (const t))
+                                         ((const :format "%v " :clock-resume) (const t))
+                                         ((const :format "%v " :time-prompt) (const t))
+                                         ((const :format "%v " :tree-type) (const week))
+                                         ((const :format "%v " :unnarrowed) (const t))
+                                         ((const :format "%v " :table-line-pos) (string))
+                                         ((const :format "%v " :kill-buffer) (const t))))))))
+
+;;; Handlers
+(defun org-roam-protocol-open-ref (info)
+  "Process an org-protocol://roam-ref?ref= style url with INFO.
+
+It opens or creates a note with the given ref.
+
+  javascript:location.href = \\='org-protocol://roam-ref?template=r&ref=\\='+ \\
+        encodeURIComponent(location.href) + \\='&title=\\=' + \\
+        encodeURIComponent(document.title) + \\='&body=\\=' + \\
+        encodeURIComponent(window.getSelection())"
+  (unless (plist-get info :ref)
+    (user-error "No ref key provided"))
+  (org-roam-plist-map! (lambda (k v)
+                         (org-link-decode
+                          (if (equal k :ref)
+                              (org-protocol-sanitize-uri v)
+                            v))) info)
+  (when org-roam-protocol-store-links
+    (push (list (plist-get info :ref)
+                (plist-get info :title)) org-stored-links))
+  (org-link-store-props :type (and (string-match org-link-plain-re
+                                                 (plist-get info :ref))
+                                   (match-string 1 (plist-get info :ref)))
+                        :link (plist-get info :ref)
+                        :annotation (org-link-make-string (plist-get info :ref)
+                                                          (or (plist-get info :title)
+                                                              (plist-get info :ref)))
+                        :initial (or (plist-get info :body) ""))
+  (raise-frame)
+  (let ((org-capture-link-is-already-stored t))
+    (org-roam-capture-
+     :keys (plist-get info :template)
+     :node (org-roam-node-create :title (plist-get info :title))
+     :info (list :ref (plist-get info :ref)
+                 :body (plist-get info :body))
+     :templates org-roam-capture-ref-templates))
+  nil)
+
+(defun org-roam-protocol-open-node (info)
+  "This handler simply opens the file with emacsclient.
+
+INFO is a plist containing additional information passed by the protocol URL.
+It should contain the FILE key, pointing to the path of the file to open.
+
+  Example protocol string:
+
+org-protocol://roam-node?node=uuid"
+  (when-let ((node (plist-get info :node)))
+    (raise-frame)
+    (org-roam-node-visit (org-roam-populate (org-roam-node-create :id node)) nil 'force))
+  nil)
+
+(push '("org-roam-ref"  :protocol "roam-ref"   :function org-roam-protocol-open-ref)
+      org-protocol-protocol-alist)
+(push '("org-roam-node"  :protocol "roam-node"   :function org-roam-protocol-open-node)
+      org-protocol-protocol-alist)
+
+(provide 'org-roam-protocol)
+
+;;; org-roam-protocol.el ends here

mkdocs.yml

@@ -1,40 +0,0 @@
-site_name: "Org-roam"
-repo_url: https://github.com/org-roam/org-roam/
-edit_uri: edit/master/doc/
-copyright: "Copyright (C) 2020 Jethro Kuan and contributors"
-docs_dir: doc
-extra:
-  social:
-    - type: 'slack'
-      link: 'https://join.slack.com/t/orgroam/shared_invite/zt-clh0g0tx-j8xg1kVxnrWdKt16gmSGPQ'
-nav:
-- Home: index.md
-- A Tour of Org-roam: tour.md
-- Installation: installation.md
-- Configuration: configuration.md
-- Anatomy of an Org-roam file: anatomy.md
-- The Templating System: templating.md
-- Ecosystem: ecosystem.md
-- Similar Packages: comparison.md
-- "Appendix: Note-taking Workflow": notetaking_workflow.md
-- "Appendix: Roam Protocol": roam_protocol.md
-- "Appendix: Org Export": org_export.md
-markdown_extensions:
-  - admonition
-  - pymdownx.betterem:
-      smart_enable: all
-  - pymdownx.caret
-  - pymdownx.critic
-  - pymdownx.details
-  - pymdownx.mark
-  - pymdownx.smartsymbols
-  - pymdownx.superfences
-  - pymdownx.tasklist:
-      custom_checkbox: true
-  - pymdownx.tilde
-
-theme:
-  name: 'material'
-  palette:
-    primary: 'deep purple'
-    accent: 'deep purple'

org-roam-buffer.el

@@ -1,276 +0,0 @@
-;;; org-roam-buffer.el --- Metadata buffer -*- coding: utf-8; lexical-binding: t; -*-
-
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; This library provides the org-roam-buffer functionality for org-roam
-;;; Code:
-;;;; Library Requires
-(eval-when-compile (require 'subr-x))
-(require 'cl-lib)
-(require 'dash)
-(require 's)
-
-(defvar org-roam-directory)
-(defvar org-link-frame-setup)
-(defvar org-return-follows-link)
-(defvar org-roam-backlinks-mode)
-(defvar org-roam-last-window)
-(defvar org-ref-cite-types) ;; in org-ref-core.el
-
-(declare-function org-roam-db--ensure-built   "org-roam-db")
-(declare-function org-roam--extract-ref       "org-roam")
-(declare-function org-roam--get-title-or-slug "org-roam")
-(declare-function org-roam--get-backlinks     "org-roam")
-(declare-function org-roam-backlinks-mode     "org-roam")
-
-(defcustom org-roam-buffer-position 'right
-  "Position of `org-roam' buffer.
-Valid values are
- * left,
- * right,
- * top,
- * bottom."
-  :type '(choice (const left)
-                 (const right)
-                 (const top)
-                 (const bottom))
-  :group 'org-roam)
-
-(defcustom org-roam-buffer-width 0.33
-  "Width of `org-roam' buffer.
-Has an effect if and only if `org-roam-buffer-position' is `left' or `right'."
-  :type 'number
-  :group 'org-roam)
-
-(defcustom org-roam-buffer-height 0.27
-  "Height of `org-roam' buffer.
-Has an effect if and only if `org-roam-buffer-position' is `top' or `bottom'."
-  :type 'number
-  :group 'org-roam)
-
-
-(defcustom org-roam-buffer "*org-roam*"
-  "Org-roam buffer name."
-  :type 'string
-  :group 'org-roam)
-
-(defcustom org-roam-buffer-prepare-hook '(org-roam-buffer--insert-title
-                                          org-roam-buffer--insert-backlinks
-                                          org-roam-buffer--insert-citelinks)
-  "Hook run in the `org-roam-buffer' before it is displayed."
-  :type 'hook
-  :group 'org-roam)
-
-(defcustom org-roam-buffer-no-delete-other-windows nil
-  "The `no-delete-other-windows' parameter of the `org-roam-buffer' window.
-When non-nil, the window will not be closed when deleting other windows."
-  :type 'boolean
-  :group 'org-roam)
-
-(defvar org-roam-buffer--current nil
-  "Currently displayed file in `org-roam' buffer.")
-
-(defun org-roam-buffer--insert-title ()
-  "Insert the org-roam-buffer title."
-  (insert (propertize (org-roam--get-title-or-slug
-                       (buffer-file-name org-roam-buffer--current))
-                       'font-lock-face
-                       'org-document-title)))
-
-(defun org-roam-buffer--pluralize (string number)
-  "Conditionally pluralize STRING if NUMBER is above 1."
-  (let ((l (pcase number
-             ((pred (listp)) (length number))
-             ((pred (integerp)) number)
-             (wrong-type (signal 'wrong-type-argument
-                                 `((listp integerp)
-                                   ,wrong-type))))))
-    (concat string (when (> l 1) "s"))))
-
-(defun org-roam-buffer--insert-citelinks ()
-  "Insert citation backlinks for the current buffer."
-  (if-let* ((ref (with-temp-buffer
-                   (insert-buffer-substring org-roam-buffer--current)
-                   (org-roam--extract-ref)))
-            (org-ref-p (require 'org-ref nil t)) ; Ensure that org-ref is present
-            (key-backlinks (org-roam--get-backlinks (cdr ref)))
-            (grouped-backlinks (--group-by (nth 0 it) key-backlinks)))
-      (progn
-        (insert (let ((l (length key-backlinks)))
-                  (format "\n\n* %d %s\n"
-                          l (org-roam-buffer--pluralize "Cite backlink" l))))
-        (dolist (group grouped-backlinks)
-          (let ((file-from (car group))
-                (bls (cdr group)))
-            (insert (format "** [[file:%s][%s]]\n"
-                            file-from
-                            (org-roam--get-title-or-slug file-from)))
-            (dolist (backlink bls)
-              (pcase-let ((`(,file-from _ ,props) backlink))
-                (insert (propertize
-                         (s-trim (s-replace "\n" " "
-                                            (plist-get props :content)))
-                         'help-echo "mouse-1: visit backlinked note"
-                         'file-from file-from
-                         'file-from-point (plist-get props :point)))
-                (insert "\n\n"))))))
-    (insert "\n\n* No cite backlinks!")))
-
-(defun org-roam-buffer--insert-backlinks ()
-  "Insert the org-roam-buffer backlinks string for the current buffer."
-  (if-let* ((file-path (buffer-file-name org-roam-buffer--current))
-            (backlinks (org-roam--get-backlinks file-path))
-            (grouped-backlinks (--group-by (nth 0 it) backlinks)))
-      (progn
-        (insert (let ((l (length backlinks)))
-                     (format "\n\n* %d %s\n"
-                             l (org-roam-buffer--pluralize "Backlink" l))))
-        (dolist (group grouped-backlinks)
-          (let ((file-from (car group))
-                (bls (cdr group)))
-            (insert (format "** [[file:%s][%s]]\n"
-                            file-from
-                            (org-roam--get-title-or-slug file-from)))
-            (dolist (backlink bls)
-              (pcase-let ((`(,file-from _ ,props) backlink))
-                (insert (propertize
-                         (s-trim (s-replace "\n" " "
-                                            (plist-get props :content)))
-                         'help-echo "mouse-1: visit backlinked note"
-                         'file-from file-from
-                         'file-from-point (plist-get props :point)))
-                (insert "\n\n"))))))
-    (insert "\n\n* No backlinks!")))
-
-(defun org-roam-buffer-update ()
-  "Update the `org-roam-buffer'."
-  (org-roam-db--ensure-built)
-  (let* ((source-org-roam-directory org-roam-directory))
-    (with-current-buffer org-roam-buffer
-      ;; When dir-locals.el is used to override org-roam-directory,
-      ;; org-roam-buffer should have a different local org-roam-directory and
-      ;; default-directory, as relative links are relative from the overridden
-      ;; org-roam-directory.
-      (setq-local org-roam-directory source-org-roam-directory)
-      (setq-local default-directory source-org-roam-directory)
-      ;; Locally overwrite the file opening function to re-use the
-      ;; last window org-roam was called from
-      (setq-local org-link-frame-setup
-                  (cons '(file . org-roam--find-file) org-link-frame-setup))
-      (let ((inhibit-read-only t))
-        (erase-buffer)
-        (unless (eq major-mode 'org-mode)
-          (org-mode))
-        (unless org-roam-backlinks-mode
-          (org-roam-backlinks-mode))
-        (make-local-variable 'org-return-follows-link)
-        (setq org-return-follows-link t)
-        (run-hooks 'org-roam-buffer-prepare-hook)
-        (read-only-mode 1)))))
-
-
-(cl-defun org-roam-buffer--update-maybe (&key redisplay)
-  "Reconstructs `org-roam-buffer'.
-This needs to be quick or infrequent, because this is run at
-`post-command-hook'.  If REDISPLAY, force an update of
-`org-roam-buffer'."
-  (let ((buffer (window-buffer)))
-    (when (and (or redisplay
-                   (not (eq org-roam-buffer--current buffer)))
-               (eq 'visible (org-roam-buffer--visibility))
-               (buffer-local-value 'buffer-file-truename buffer))
-      (setq org-roam-buffer--current buffer)
-      (org-roam-buffer-update))))
-
-;;;; Toggling the org-roam buffer
-(define-inline org-roam-buffer--visibility ()
-  "Return whether the current visibility state of the org-roam buffer.
-Valid states are 'visible, 'exists and 'none."
-  (declare (side-effect-free t))
-  (inline-quote
-   (cond
-    ((get-buffer-window org-roam-buffer) 'visible)
-    ((get-buffer org-roam-buffer) 'exists)
-    (t 'none))))
-
-(defun org-roam-buffer--set-width (width)
-  "Set the width of `org-roam-buffer' to `WIDTH'."
-  (unless (one-window-p)
-    (let ((window-size-fixed)
-          (w (max width window-min-width)))
-      (cond
-       ((> (window-width) w)
-        (shrink-window-horizontally  (- (window-width) w)))
-       ((< (window-width) w)
-        (enlarge-window-horizontally (- w (window-width))))))))
-
-(defun org-roam-buffer--set-height (height)
-  "Set the height of `org-roam-buffer' to `HEIGHT'."
-  (unless (one-window-p)
-    (let ((window-size-fixed)
-          (h (max height window-min-height)))
-      (cond
-       ((> (window-height) h)
-        (shrink-window  (- (window-height) h)))
-       ((< (window-height) h)
-        (enlarge-window (- h (window-height))))))))
-
-(defun org-roam-buffer--get-create ()
-  "Set up the `org-roam' buffer at `org-roam-buffer-position'."
-  (let ((window (get-buffer-window))
-        (position
-         (if (member org-roam-buffer-position '(right left top bottom))
-             org-roam-buffer-position
-           (let ((text-quoting-style 'grave))
-             (lwarn '(org-roam) :error
-                    "Invalid org-roam-buffer-position: %s. Defaulting to \\='right"
-                    org-roam-buffer-position))
-           'right)))
-    (-> (get-buffer-create org-roam-buffer)
-        (display-buffer-in-side-window
-         `((side . ,position)
-           (window-parameters . ((no-delete-other-windows . ,org-roam-buffer-no-delete-other-windows)))))
-        (select-window))
-    (pcase position
-      ((or 'right 'left)
-       (org-roam-buffer--set-width  (round (* (frame-width)  org-roam-buffer-width))))
-      ((or 'top  'bottom)
-       (org-roam-buffer--set-height (round (* (frame-height) org-roam-buffer-height)))))
-    (select-window window)))
-
-(defun org-roam-buffer-toggle-display ()
-  "Toggle display of the `org-roam-buffer'."
-  (interactive)
-  (setq org-roam-last-window (get-buffer-window))
-  (pcase (org-roam-buffer--visibility)
-    ('visible (delete-window (get-buffer-window org-roam-buffer)))
-    ((or 'exists 'none) (org-roam-buffer--get-create))))
-
-(provide 'org-roam-buffer)
-
-;;; org-roam-buffer.el ends here

org-roam-compat.el

@@ -1,12 +1,12 @@
-;;; org-roam-compat.el --- Compatibility Code -*- coding: utf-8; lexical-binding: t; -*-
+;;; org-roam-compat.el --- Backward compatibility code -*- coding: utf-8; lexical-binding: t; -*-
 
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
 
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1"))
 
 ;; This file is NOT part of GNU Emacs.
 
@@ -27,74 +27,214 @@
 
 ;;; Commentary:
 ;;
-;; This file contains code needed for backward compatibility with older Emacsen
-;; and previous versions of org-roam.
+;; This file is dedicated to maintain backward compatibility with older older
+;; Emacsen and Org-roam versions.
 ;;
 ;;; Code:
-;;;; Library Requires
+(require 'org-roam)
+
+;;; Backports
+;; REVIEW Remove when 26.x support is dropped. This is exact the same as
+;; `directory-files-recursively' from Emacs 26, but with FOLLOW-SYMLINKS
+;; parameter from Emacs 27.
+(defun org-roam--directory-files-recursively (dir regexp
+                                                  &optional include-directories predicate
+                                                  follow-symlinks)
+  "Return list of all files under directory DIR whose names match REGEXP.
+This function works recursively.  Files are returned in \"depth
+first\" order, and files from each directory are sorted in
+alphabetical order.  Each file name appears in the returned list
+in its absolute form.
+
+By default, the returned list excludes directories, but if
+optional argument INCLUDE-DIRECTORIES is non-nil, they are
+included.
+
+PREDICATE can be either nil (which means that all subdirectories
+of DIR are descended into), t (which means that subdirectories that
+can't be read are ignored), or a function (which is called with
+the name of each subdirectory, and should return non-nil if the
+subdirectory is to be descended into).
+
+If FOLLOW-SYMLINKS is non-nil, symbolic links that point to
+directories are followed.  Note that this can lead to infinite
+recursion."
+  (let* ((result nil)
+         (files nil)
+         (dir (directory-file-name dir))
+         ;; When DIR is "/", remote file names like "/method:" could
+         ;; also be offered.  We shall suppress them.
+         (tramp-mode (and tramp-mode (file-remote-p (expand-file-name dir)))))
+    (dolist (file (sort (file-name-all-completions "" dir)
+                        'string<))
+      (unless (member file '("./" "../"))
+        (if (directory-name-p file)
+            (let* ((leaf (substring file 0 (1- (length file))))
+                   (full-file (concat dir "/" leaf)))
+              ;; Don't follow symlinks to other directories.
+              (when (and (or (not (file-symlink-p full-file))
+                             (and (file-symlink-p full-file)
+                                  follow-symlinks))
+                         ;; Allow filtering subdirectories.
+                         (or (eq predicate nil)
+                             (eq predicate t)
+                             (funcall predicate full-file)))
+                (let ((sub-files
+                       (if (eq predicate t)
+                           (condition-case nil
+                               (org-roam--directory-files-recursively
+                                full-file regexp include-directories
+                                predicate follow-symlinks)
+                             (file-error nil))
+                         (org-roam--directory-files-recursively
+                          full-file regexp include-directories
+                          predicate follow-symlinks))))
+                  (setq result (nconc result sub-files))))
+              (when (and include-directories
+                         (string-match regexp leaf))
+                (setq result (nconc result (list full-file)))))
+          (when (string-match regexp file)
+            (push (concat dir "/" file) files)))))
+    (nconc result (nreverse files))))
+
+;;; Compatibility hacks and patches
+(advice-add #'org-id-add-location :around #'org-roam--handle-absent-org-id-locations-file-a)
+(defun org-roam--handle-absent-org-id-locations-file-a (fn &rest args)
+  "Gracefully handle errors related to absence of `org-id-locations-file'.
+FN is `org-id-add-location' that comes from advice and ARGS are
+passed to it."
+  (condition-case err
+      (apply fn args)
+    ;; `org-id' makes the assumption that `org-id-locations-file' will be stored in `user-emacs-directory'
+    ;; which always exist if you have Emacs, so it uses `with-temp-file' to write to the file. However, the
+    ;; users *do* change the path to this file and `with-temp-file' unable to create the file, if the path to
+    ;; it consists of directories that don't exist. We'll have to handle this ourselves.
+    (error
+     (advice-remove 'org-id-add-location #'org-roam--handle-absent-org-id-locations-file-a)
+     (if (file-exists-p (file-truename org-id-locations-file))
+         (signal (car err) (cdr err))
+       ;; Pre-allocate the hash table to avoid weird access related errors during the regeneration.
+       (or org-id-locations (setq org-id-locations (make-hash-table :test 'equal)))
+       ;; If permissions allow that, try to create the user specified directory path to
+       ;; `org-id-locations-file' ourselves.
+       (condition-case _err
+           (progn (org-roam-message (concat "`org-id-locations-file' (%s) doesn't exist. "
+                                            "Trying to regenerate it (this may take a while)...")
+                                    org-id-locations-file)
+                  (make-directory (file-name-directory (file-truename org-id-locations-file)))
+                  (org-roam-update-org-id-locations)
+                  (apply fn args))
+         ;; In case of failure (lack of permissions), we'll patch it to at least handle the current session
+         ;; without errors.
+         (file-error (org-roam-message "Failed to regenerate `org-id-locations-file'")
+                     (lwarn 'org-roam :error "
+--------
+WARNING: `org-id-locations-file' (%s) doesn't exist!
+         Org-roam is unable to create it for you.
+--------
+
+This happens when Emacs doesn't have permissions to create the
+path to your `org-id-locations-file'. Org-roam will now fallback
+storing the file in your current `org-roam-directory', but the
+warning will keep popup with each new session.
+
+To stop this warning from popping up, set `org-id-locations-file'
+to the location you want and ensure that the path exists on your
+filesystem, then run M-x `org-roam-update-org-id-locations'.
+
+Note: While Org-roam doesn't depend on `org-id-locations-file' to
+lookup IDs for the nodes that are stored in the database, it
+still tries to keep it updated so IDs work across other files in
+Org-mode, so the IDs used in your `org-roam-directory' would be
+able to cross-reference outside of `org-roam-directory'. It also
+allows to keep linking with \"id:\" links within the current
+`org-roam-directory' to headings and files that are excluded from
+identification (e.g. with \"ROAM_EXCLUDE\" property) as Org-roam
+nodes." org-id-locations-file)
+                     (setq org-id-locations-file
+                           (expand-file-name ".orgids" (file-truename org-roam-directory)))
+                     (apply fn args)))))))
+
+;;;; Deprecated :if-new capture template keyword
+(with-eval-after-load 'org-roam-capture
+  (add-to-list 'org-roam-capture--template-keywords :if-new)
+
+  (let ((inhibit-warning-p t)) ; REVIEW Set this to nil close to next major release
+    (advice-add 'org-roam-capture--get-target :around #'org-roam-capture--get-if-new-target-a)
+    (defun org-roam-capture--get-if-new-target-a (fn &rest args)
+      "Get the current capture target using deprecated :if-new property."
+      (if-let ((target (org-roam-capture--get :if-new)))
+          (prog1 target
+            (unless inhibit-warning-p
+              (lwarn 'org-roam-capture :warning
+                     (mapconcat
+                      #'identity
+                      ["`:if-new' property is deprecated in favor of `:target'."
+                       "This warning will popup once per each session. In order to get"
+                       "rid of it, rename all the references to the `:if-new' property"
+                       "in your capture templates to `:target'."]
+                      "\n"))
+              ;; Don't irritate the user too much. Displaying the warning once per session should be enough.
+              (setq inhibit-warning-p t)))
+        (apply fn args)))))
 
 ;;; Obsolete aliases (remove after next major release)
-;;;; Functions
-(define-obsolete-function-alias 'org-roam--capture-get-point 'org-roam-capture--get-point
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-build-cache 'org-roam-db-build-cache
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-sql         'org-roam-db-query
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--get-db     'org-roam-db--get
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--db-clear   'org-roam-db--clear
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-show-graph  'org-roam-graph-show
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--maybe-update-buffer
-  'org-roam-buffer--update-maybe "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--current-visibility
-  'org-roam-buffer--visibility "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-update         'org-roam-buffer-update
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--set-width     'org-roam-buffer--set-width
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--set-height    'org-roam-buffer--set-height
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam--set-up-buffer 'org-roam-buffer--get-create
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-today 'org-roam-dailies-today
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-tomorrow 'org-roam-dailies-tomorrow
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-yesterday 'org-roam-dailies-yesterday
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-date 'org-roam-dailies-date
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-graph-show  'org-roam-graph
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-graph-build 'org-roam-graph
-  "org-roam 1.0.0")
-(define-obsolete-function-alias 'org-roam-find-index 'org-roam-jump-to-index
-  "org-roam 1.1.0")
-(define-obsolete-function-alias 'org-roam--pluralize 'org-roam-buffer--pluralize
-  "org-roam 1.1.0")
-(define-obsolete-function-alias 'org-roam--capture 'org-roam-capture--capture
-  "org-roam 1.1.0")
-(define-obsolete-function-alias 'org-roam-db--maybe-update 'org-roam-db--update-maybe
-  "org-roam 1.1.0")
+(define-obsolete-function-alias
+  'org-roam-setup
+  'org-roam-db-autosync-enable "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-teardown
+  'org-roam-db-autosync-disable "org-roam 2.0")
 
-;;;; Variables
-(define-obsolete-variable-alias 'org-roam-graphviz-extra-options
-  'org-roam-graph-extra-config "org-roam 1.0.0")
-(define-obsolete-variable-alias 'org-roam-grapher-extra-options
-  'org-roam-graph-extra-config "org-roam 1.0.0")
-(define-obsolete-variable-alias 'org-roam-graph-node-shape
-  'org-roam-graph-node-extra-config "org-roam 1.0.0")
-(define-obsolete-variable-alias 'org-roam--db-connection
-  'org-roam-db--connection "org-roam 1.0.0")
-(define-obsolete-variable-alias 'org-roam--current-buffer
-  'org-roam-buffer--current "org-roam 1.0.0")
-(define-obsolete-variable-alias 'org-roam-date-title-format
-  'org-roam-dailies-capture-templates "org-roam 1.0.0")
-(define-obsolete-variable-alias 'org-roam-date-filename-format
-  'org-roam-dailies-capture-templates "org-roam 1.0.0")
+(define-obsolete-variable-alias
+  'org-roam-current-node
+  'org-roam-buffer-current-node "org-roam 2.0")
+(define-obsolete-variable-alias
+  'org-roam-current-directory
+  'org-roam-buffer-current-directory "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-buffer-render
+  'org-roam-buffer-render-contents "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-buffer
+  'org-roam-buffer-display-dedicated "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-visit-thing
+  'org-roam-buffer-visit-thing "org-roam 2.0")
+
+(define-obsolete-function-alias
+  'org-roam-dailies-find-today
+  'org-roam-dailies-goto-today "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-dailies-find-yesterday
+  'org-roam-dailies-goto-yesterday "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-dailies-find-tomorrow
+  'org-roam-dailies-goto-tomorrow "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-dailies-find-next-note
+  'org-roam-dailies-goto-next-note "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-dailies-find-previous-note
+  'org-roam-dailies-goto-previous-note "org-roam 2.0")
+(define-obsolete-function-alias
+  'org-roam-dailies-find-date
+  'org-roam-dailies-goto-date "org-roam 2.0")
+
+(define-obsolete-function-alias
+  'org-roam-add-property
+  'org-roam-property-add "org-roam 2.1")
+
+(define-obsolete-function-alias
+  'org-roam-remove-property
+  'org-roam-property-remove "org-roam 2.1")
+
+(define-obsolete-variable-alias
+  'org-roam-mode-section-functions
+  'org-roam-mode-sections "org-roam 2.2.0")
+
+;;; Obsolete functions
+(make-obsolete 'org-roam-get-keyword 'org-collect-keywords "org-roam 2.0")
 
 (provide 'org-roam-compat)
 

org-roam-completion.el

@@ -1,111 +0,0 @@
-;;; org-roam-completion.el --- Completion features -*- coding: utf-8; lexical-binding: t; -*-
-
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; This library provides completion for org-roam.
-;;; Code:
-;;;; Library Requires
-(require 'cl-lib)
-(require 's)
-
-(defvar helm-pattern)
-(declare-function helm "ext:helm")
-(declare-function helm-make-source "ext:helm-source" (name class &rest args) t)
-
-(defcustom org-roam-completion-system 'default
-  "The completion system to be used by `org-roam'."
-  :type '(radio
-          (const :tag "Default" default)
-          (const :tag "Ido" ido)
-          (const :tag "Ivy" ivy)
-          (const :tag "Helm" helm)
-          (function :tag "Custom function"))
-  :group 'org-roam)
-
-(defun org-roam-completion--helm-candidate-transformer (candidates _source)
-  "Transforms CANDIDATES for Helm-based completing read.
-SOURCE is not used."
-  (let ((prefix (propertize "[?] "
-                            'face 'helm-ff-prefix)))
-    (cons (propertize helm-pattern
-                      'display (concat prefix helm-pattern))
-          candidates)))
-
-(cl-defun org-roam-completion--completing-read (prompt choices &key
-                                                       require-match initial-input
-                                                       action)
-  "Present a PROMPT with CHOICES and optional INITIAL-INPUT.
-If REQUIRE-MATCH is t, the user must select one of the CHOICES.
-Return user choice."
-  (let (res)
-    (setq res
-          (cond
-           ((eq org-roam-completion-system 'ido)
-            (let ((candidates (mapcar #'car choices)))
-              (ido-completing-read prompt candidates nil require-match initial-input)))
-           ((eq org-roam-completion-system 'default)
-            (completing-read prompt choices nil require-match initial-input))
-           ((eq org-roam-completion-system 'ivy)
-            (if (fboundp 'ivy-read)
-                (ivy-read prompt choices
-                          :initial-input initial-input
-                          :require-match require-match
-                          :action (prog1 action
-                                    (setq action nil))
-                          :caller 'org-roam--completing-read)
-              (user-error "Please install ivy from \
-https://github.com/abo-abo/swiper")))
-           ((eq org-roam-completion-system 'helm)
-            (unless (and (fboundp 'helm)
-                         (fboundp 'helm-make-source))
-              (user-error "Please install helm from \
-https://github.com/emacs-helm/helm"))
-            (let ((source (helm-make-source prompt 'helm-source-sync
-                            :candidates (mapcar #'car choices)
-                            :filtered-candidate-transformer
-                            (and (not require-match)
-                                 #'org-roam-completion--helm-candidate-transformer)))
-                  (buf (concat "*org-roam "
-                               (s-downcase (s-chop-suffix ":" (s-trim prompt)))
-                               "*")))
-              (or (helm :sources source
-                        :action (if action
-                                    (prog1 action
-                                      (setq action nil))
-                                  #'identity)
-                        :prompt prompt
-                        :input initial-input
-                        :buffer buf)
-                  (keyboard-quit))))))
-    (if action
-        (funcall action res)
-      res)))
-
-(provide 'org-roam-completion)
-
-;;; org-roam-completion.el ends here

org-roam-dailies.el

@@ -1,84 +0,0 @@
-;;; org-roam-dailies.el --- Daily notes for Org-roam -*- coding: utf-8; lexical-binding: t; -*-
-;;;
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; This library provides functionality for creating daily notes. This is a
-;; concept borrowed from Roam Research.
-;;
-;;; Code:
-;;; Library Requires
-(require 'org-capture)
-(require 'org-roam-capture)
-(require 'org-roam-macs)
-
-(defvar org-roam-dailies-capture-templates
-  '(("d" "daily" plain (function org-roam-capture--get-point)
-     ""
-     :immediate-finish t
-     :file-name "%<%Y-%m-%d>"
-     :head "#+TITLE: %<%Y-%m-%d>"))
-  "Capture templates for daily notes in Org-roam.")
-
-;; Declarations
-(declare-function org-roam--file-path-from-id "org-roam")
-
-(defun org-roam-dailies--file-for-time (time)
-  "Create and find file for TIME."
-  (let ((org-roam-capture-templates org-roam-dailies-capture-templates)
-        (org-roam-capture--info (list (cons 'time time)))
-        (org-roam-capture--context 'dailies))
-    (add-hook 'org-capture-after-finalize-hook #'org-roam-capture--find-file-h)
-    (org-roam--with-template-error 'org-roam-dailies-capture-templates
-      (org-roam-capture--capture))))
-
-(defun org-roam-dailies-today ()
-  "Create and find the daily note for today."
-  (interactive)
-  (org-roam-dailies--file-for-time (current-time)))
-
-(defun org-roam-dailies-tomorrow (n)
-  "Create and find the daily note for tomorrow.
-With numeric argument N, use N days in the future."
-  (interactive "p")
-  (org-roam-dailies--file-for-time (time-add (* n 86400) (current-time))))
-
-(defun org-roam-dailies-yesterday (n)
-  "Create and find the file for yesterday.
-With numeric argument N, use N days in the past."
-  (interactive "p")
-  (org-roam-dailies-tomorrow (- n)))
-
-(defun org-roam-dailies-date ()
-  "Create the file for any date using the calendar interface."
-  (interactive)
-  (let ((time (org-read-date nil 'to-time nil "Date:  ")))
-    (org-roam-dailies--file-for-time time)))
-
-(provide 'org-roam-dailies)
-
-;;; org-roam-dailies.el ends here

org-roam-dev.el

@@ -1,40 +0,0 @@
-;;; org-roam-dev.el --- Org-roam development code -mode -*- coding: utf-8; lexical-binding: t; -*-
-
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; This library provides code for org-roam developers.
-;; It is intended to be loaded before editing org-roam source files.
-;; It ensures consistent application of various developer settings.
-;;
-;;; Code:
-(require 'emacsql)
-(emacsql-fix-vector-indentation)
-(setq-local sentence-end-double-space nil)
-(provide 'org-roam-dev)
-
-;;; org-roam-dev.el ends here

org-roam-doctor.el

@@ -1,231 +0,0 @@
-;;; org-roam-doctor.el --- Linter for Org-roam files -*- coding: utf-8; lexical-binding: t; -*-
-;;
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/jethrokuan/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-
-;;; Commentary:
-;;
-;; This library provides `org-roam-doctor', a utility for diagnosing and fixing
-;; Org-roam files. Running `org-roam-doctor' launches a list of checks defined
-;; by `org-roam-doctor--checkers'. Every checker is an instance of
-;; `org-roam-doctor-checker'.
-;;
-;; Each checker is given the Org parse tree (AST), and is expected to return a
-;; list of errors. The checker can also provide "actions" for auto-fixing errors
-;; (see `org-roam-doctor--remove-link' for an example).
-;;
-;; The UX experience is inspired by both org-lint and checkdoc, and their code
-;; is heavily referenced.
-;;
-;;; Code:
-;; Library Requires
-(require 'cl-lib)
-(require 'org)
-(require 'org-roam-macs)
-(require 'org-element)
-
-(declare-function org-roam-insert "org-roam")
-(declare-function org-roam--get-roam-buffers "org-roam")
-(declare-function org-roam--list-all-files "org-roam")
-(declare-function org-roam--org-roam-file-p "org-roam")
-
-(defvar org-roam-verbose)
-
-(cl-defstruct (org-roam-doctor-checker (:copier nil))
-  (name 'missing-checker-name)
-  (description "")
-  (actions nil))
-
-(defconst org-roam-doctor--checkers
-  (list
-   (make-org-roam-doctor-checker
-    :name 'org-roam-doctor-broken-links
-    :description "Fix broken links."
-    :actions '(("d" . ("Unlink" . org-roam-doctor--remove-link))
-               ("r" . ("Replace link" . org-roam-doctor--replace-link))
-               ("R" . ("Replace link (keep label)" . org-roam-doctor--replace-link-keep-label))))))
-
-(defun org-roam-doctor-broken-links (ast)
-  "Checker for detecting broken links.
-AST is the org-element parse tree."
-  (let (reports)
-    (org-element-map ast 'link
-      (lambda (l)
-        (when (equal "file" (org-element-property :type l))
-          (let ((file (org-element-property :path l)))
-            (or (file-exists-p file)
-                (file-remote-p file)
-                (push
-                 `(,(org-element-property :begin l)
-                   ,(format (if (org-element-lineage l '(link))
-                                "Link to non-existent image file \"%s\"\
- in link description"
-                              "Link to non-existent local file \"%s\"")
-                            file))
-                 reports))))))
-    reports))
-
-(defun org-roam-doctor--check (buffer checkers)
-  "Check BUFFER for errors.
-CHECKERS is the list of checkers used."
-  (with-current-buffer buffer
-    (save-excursion
-      (goto-char (point-min))
-      (let* ((ast (org-element-parse-buffer))
-             (errors (sort (cl-mapcan
-                            (lambda (c)
-                              (mapcar
-                               (lambda (report)
-                                 (list (set-marker (make-marker) (car report))
-                                       (nth 1 report) c))
-                               (save-excursion
-                                 (funcall
-                                  (org-roam-doctor-checker-name c)
-                                  ast))))
-                            checkers)
-                           #'car-less-than-car)))
-        (dolist (e errors)
-          (pcase-let ((`(,m ,msg ,checker) e))
-            (switch-to-buffer buffer)
-            (goto-char m)
-            (org-reveal)
-            (undo-boundary)
-            (org-roam-doctor--resolve msg checker)
-            (set-marker m nil)))
-        errors))))
-
-;;; Actions
-(defun org-roam-doctor--recursive-edit ()
-  "Launch into a recursive edit."
-  (message "When you're done editing press C-M-c to continue.")
-  (recursive-edit))
-
-(defun org-roam-doctor--skip ()
-  "Skip the current error."
-  (org-roam-message "Skipping..."))
-
-(defun org-roam-doctor--replace-link ()
-  "Replace the current link with a new link."
-  (save-match-data
-    (unless (org-in-regexp org-link-bracket-re 1)
-      (user-error "No link at point"))
-    (let ((orig (buffer-string))
-          (p (point)))
-      (condition-case nil
-          (save-excursion
-            (replace-match "")
-            (org-roam-insert))
-        (quit (progn
-                (replace-buffer-contents orig)
-                (goto-char p)))))))
-
-(defun org-roam-doctor--replace-link-keep-label ()
-  "Replace the current link with a new link, keeping the current link's label."
-  (save-match-data
-    (unless (org-in-regexp org-link-bracket-re 1)
-      (user-error "No link at point"))
-    (let ((orig (buffer-string))
-          (p (point)))
-      (condition-case nil
-          (save-excursion
-            (let ((label (if (match-end 2)
-                             (match-string-no-properties 2)
-                           (org-link-unescape (match-string-no-properties 1)))))
-              (replace-match "")
-              (org-roam-insert nil nil label)))
-        (quit (progn
-                (replace-buffer-contents orig)
-                (goto-char p)))))))
-
-(defun org-roam-doctor--remove-link ()
-  "Unlink the text at point."
-  (unless (org-in-regexp org-link-bracket-re 1)
-    (user-error "No link at point"))
-  (save-excursion
-    (let ((label (if (match-end 2)
-                     (match-string-no-properties 2)
-                   (org-link-unescape (match-string-no-properties 1)))))
-      (delete-region (match-beginning 0) (match-end 0))
-      (insert label))))
-
-(defun org-roam-doctor--resolve (msg checker)
-  "Resolve an error.
-MSG is the error that was found, which is displayed in a help buffer.
-CHECKER is a org-roam-doctor checker instance."
-  (let ((actions (org-roam-doctor-checker-actions checker))
-        c)
-    (push '("e" . ("Edit" . org-roam-doctor--recursive-edit)) actions)
-    (push '("s" . ("Skip" . org-roam-doctor--skip)) actions)
-    (with-output-to-temp-buffer "*Org-roam-doctor Help*"
-      (mapc #'princ
-            (list "Error message:\n   " msg "\n\n"))
-      (dolist (action actions)
-        (princ (format "[%s]: %s\n"
-                       (car action)
-                       (cadr action))))
-      (princ "\n\n"))
-    (shrink-window-if-larger-than-buffer
-     (get-buffer-window "*Org-roam-doctor Help*"))
-    (message "Press key for command:")
-    (unwind-protect
-        (progn
-          (cl-loop
-           do (setq c (char-to-string (read-char-exclusive)))
-           until (assoc c actions)
-           do (message "Please enter a valid key for command:"))
-          (funcall (cddr (assoc c actions)))
-          (redisplay))
-      (when (get-buffer-window "*Org-roam-doctor Help*")
-        (delete-window (get-buffer-window "*Org-roam-doctor Help*"))
-        (kill-buffer "*Org-roam-doctor Help*")))))
-
-;;;###autoload
-(defun org-roam-doctor (&optional checkall)
-  "Perform a check on the current buffer to ensure cleanliness.
-If CHECKALL, run the check for all Org-roam files."
-  (interactive "P")
-  (let ((files (if checkall
-                  (org-roam--list-all-files)
-                (unless (org-roam--org-roam-file-p)
-                  (user-error "Not in an org-roam file"))
-                `(,(buffer-file-name)))))
-    (org-roam-doctor-start files org-roam-doctor--checkers)))
-
-(defun org-roam-doctor-start (files checkers)
-  "Lint FILES using CHECKERS."
-  (save-window-excursion
-    (let ((existing-buffers (org-roam--get-roam-buffers)))
-      (dolist (f files)
-        (let ((buf (find-file-noselect f)))
-          (org-roam-doctor--check buf checkers)
-          (unless (memq buf existing-buffers)
-            (save-buffer buf)
-            (kill-buffer buf))))))
-  (org-roam-message "Linting completed."))
-
-(provide 'org-roam-doctor)
-
-;;; org-roam-doctor.el ends here

org-roam-graph.el

@@ -1,296 +0,0 @@
-;;; org-roam-graph.el --- Graphing API -*- coding: utf-8; lexical-binding: t; -*-
-
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; This library provides graphing functionality for org-roam.
-;;
-;;; Code:
-(require 'xml) ;xml-escape-string
-(require 's)   ;s-truncate, s-replace
-(require 'org-roam-macs)
-(require 'org-roam-db)
-
-;;;; Declarations
-(defvar org-roam-directory)
-(declare-function org-roam--org-roam-file-p  "org-roam")
-(declare-function org-roam--path-to-slug     "org-roam")
-
-;;;; Options
-(defcustom org-roam-graph-viewer (executable-find "firefox")
-  "Method to view the org-roam graph.
-It may be one of the following:
-  - a string representing the path to the executable for viewing the graph.
-  - a function accepting a single argument: the graph file path.
-  - nil uses `view-file' to view the graph."
-  :type '(choice
-          (string   :tag "Path to executable")
-          (function :tag "Function to display graph" eww-open-file)
-          (const    :tag "view-file"))
-  :group 'org-roam)
-
-(defcustom org-roam-graph-executable "dot"
-  "Path to graphing executable, or its name."
-  :type 'string
-  :group 'org-roam)
-
-(defcustom org-roam-graph-extra-config nil
-  "Extra options passed to graphviz.
-Example:
- '((\"rankdir\" . \"LR\"))"
-  :type '(alist)
-  :group 'org-roam)
-
-(defcustom org-roam-graph-node-extra-config
-  '(("shape"      . "underline")
-    ("style"      . "rounded,filled")
-    ("fillcolor"  . "#EEEEEE")
-    ("color"      . "#C9C9C9")
-    ("fontcolor"  . "#111111"))
-  "Extra options for graphviz nodes.
-Example:
- '((\"color\" . \"skyblue\"))"
-  :type '(alist)
-  :group 'org-roam)
-
-(defcustom org-roam-graph-edge-extra-config
-  '(("color" . "#333333"))
-  "Extra options for graphviz edges.
-Example:
- '((\"dir\" . \"back\"))"
-  :type '(alist)
-  :group 'org-roam)
-
-(defcustom org-roam-graph-edge-cites-extra-config '(("color" . "red"))
-  "Extra options for graphviz edges for citation links.
-Example:
- '((\"dir\" . \"back\"))"
-  :type '(alist)
-  :group 'org-roam)
-
-(defcustom org-roam-graph-max-title-length 100
-  "Maximum length of titles in graph nodes."
-  :type 'number
-  :group 'org-roam)
-
-(defcustom org-roam-graph-shorten-titles 'truncate
-  "Determines how long titles appear in graph nodes.
-Recognized values are the symbols `truncate' and `wrap', in which
-cases the title will be truncated or wrapped, respectively, if it
-is longer than `org-roam-graph-max-title-length'.
-
-All other values including nil will have no effect."
-  :type '(choice
-          (const :tag "truncate" truncate)
-          (const :tag "wrap" wrap)
-          (const :tag "no" nil))
-  :group 'org-roam)
-
-(defcustom org-roam-graph-exclude-matcher nil
-  "Matcher for excluding nodes from the generated graph.
-Any nodes and links for file paths matching this string is
-excluded from the graph.
-
-If value is a string, the string is the only matcher.
-
-If value is a list, all file paths matching any of the strings
-are excluded."
-  :type '(choice
-          (string :tag "Matcher")
-          (list :tag "Matchers"))
-  :group 'org-roam)
-
-;;;; Functions
-(defun org-roam-graph--expand-matcher (col &optional negate where)
-  "Return the exclusion regexp from `org-roam-graph-exclude-matcher'.
-COL is the symbol to be matched against.  if NEGATE, add :not to sql query.
-set WHERE to true if WHERE query already exists."
-  (let ((matchers (pcase org-roam-graph-exclude-matcher
-                    ('nil nil)
-                    ((pred stringp) `(,(concat "%" org-roam-graph-exclude-matcher "%")))
-                    ((pred listp) (mapcar (lambda (m)
-                                            (concat "%" m "%"))
-                                          org-roam-graph-exclude-matcher))
-                    (_ (error "Invalid org-roam-graph-exclude-matcher"))))
-        res)
-    (dolist (match matchers)
-      (if where
-          (push :and res)
-        (push :where res)
-        (setq where t))
-      (push col res)
-      (when negate
-        (push :not res))
-      (push :like res)
-      (push match res))
-    (nreverse res)))
-
-(defun org-roam-graph--dot-option (option &optional wrap-key wrap-val)
-  "Return dot string of form KEY=VAL for OPTION cons.
-If WRAP-KEY is non-nil it wraps the KEY.
-If WRAP-VAL is non-nil it wraps the VAL."
-  (concat wrap-key (car option) wrap-key
-          "="
-          wrap-val (cdr option) wrap-val))
-
-(defun org-roam-graph--dot (node-query)
-  "Build the graphviz dot string for NODE-QUERY.
-The Org-roam database titles table is read, to obtain the list of titles.
-The links table is then read to obtain all directed links, and formatted
-into a digraph."
-  (org-roam-db--ensure-built)
-  (org-roam--with-temp-buffer
-    (let* ((nodes (org-roam-db-query node-query))
-           (edges-query
-            `[:with selected :as [:select [file] :from ,node-query]
-              :select :distinct [to from] :from links
-              :where (and (in to selected) (in from selected))])
-           (edges-cites-query
-            `[:with selected :as [:select [file] :from ,node-query]
-              :select :distinct [file from]
-              :from links :inner :join refs :on (and (= links:to refs:ref)
-                                                     (= links:type "cite")
-                                                     (= refs:type "cite"))
-              :where (and (in file selected) (in from selected))])
-           (edges       (org-roam-db-query edges-query))
-           (edges-cites (org-roam-db-query edges-cites-query)))
-      (insert "digraph \"org-roam\" {\n")
-      (dolist (option org-roam-graph-extra-config)
-        (insert (org-roam-graph--dot-option option) ";\n"))
-      (dolist (attribute '("node" "edge"))
-        (insert (format " %s [%s];\n" attribute
-                        (mapconcat (lambda (var)
-                                     (org-roam-graph--dot-option var nil "\""))
-                                   (symbol-value
-                                    (intern (concat "org-roam-graph-" attribute "-extra-config")))
-                                   ","))))
-      (dolist (node nodes)
-        (let* ((file (xml-escape-string (car node)))
-               (title (or (caadr node)
-                          (org-roam--path-to-slug file)))
-               (shortened-title (pcase org-roam-graph-shorten-titles
-                                  (`truncate (s-truncate org-roam-graph-max-title-length title))
-                                  (`wrap (s-word-wrap org-roam-graph-max-title-length title))
-                                  (_ title)))
-               (node-properties
-                `(("label"   . ,(s-replace "\"" "\\\"" shortened-title))
-                  ("URL"     . ,(concat "org-protocol://roam-file?file=" (url-hexify-string file)))
-                  ("tooltip" . ,(xml-escape-string title)))))
-          (insert
-           (format "  \"%s\" [%s];\n" file
-                   (mapconcat (lambda (n)
-                                (org-roam-graph--dot-option n nil "\""))
-                              node-properties ",")))))
-      (dolist (edge edges)
-        (insert (apply #'format `("  \"%s\" -> \"%s\";\n"
-                                  ,@(mapcar #'xml-escape-string edge)))))
-      (insert (format "  edge [%s];\n"
-                      (mapconcat #'org-roam-graph--dot-option
-                                 org-roam-graph-edge-cites-extra-config ",")))
-      (dolist (edge edges-cites)
-        (insert (apply #'format `("  \"%s\" -> \"%s\";\n"
-                                  ,@(mapcar #'xml-escape-string edge)))))
-      (insert "}")
-      (buffer-string))))
-
-(defun org-roam-graph--build (&optional node-query)
-  "Generate a graph showing the relations between nodes in NODE-QUERY."
-  (let ((name org-roam-graph-executable))
-    (unless (stringp name)
-      (user-error "`org-roam-graph-executable' is not a string"))
-    (unless (executable-find org-roam-graph-executable)
-      (user-error (concat "Cannot find executable \"%s\" to generate the graph.  "
-                          "Please adjust `org-roam-graph-executable'")
-                  name))
-    (let* ((node-query (or node-query
-                           `[:select [file titles]
-                             :from titles
-                             ,@(org-roam-graph--expand-matcher 'file t)]))
-           (graph (org-roam-graph--dot node-query))
-           (temp-dot (make-temp-file "graph." nil ".dot" graph))
-           (temp-graph (make-temp-file "graph." nil ".svg")))
-      (call-process name nil 0 nil temp-dot "-Tsvg" "-o" temp-graph)
-      temp-graph)))
-
-(defun org-roam-graph--open (file)
-  "Open FILE using `org-roam-graph-viewer' with `view-file' as a fallback."
-  (pcase org-roam-graph-viewer
-    ((pred stringp)
-     (if (executable-find org-roam-graph-viewer)
-         (condition-case err
-             (call-process org-roam-graph-viewer nil 0 nil file)
-           (error (user-error "Failed to open org-roam graph: %s" err)))
-       (user-error "Executable not found: \"%s\"" org-roam-graph-viewer)))
-    ((pred functionp) (funcall org-roam-graph-viewer file))
-    ('nil (view-file file))
-    (_ (signal 'wrong-type-argument `((functionp stringp null) ,org-roam-graph-viewer)))))
-
-(defun org-roam-graph--build-connected-component (file &optional max-distance)
-  "Build a graph of nodes connected to FILE.
-If MAX-DISTANCE is non-nil, limit nodes to MAX-DISTANCE steps."
-  (let* ((file (file-truename file))
-         (files (or (if (and max-distance (>= max-distance 0))
-                        (org-roam-db--links-with-max-distance file max-distance)
-                      (org-roam-db--connected-component file))
-                    (list file)))
-         (query `[:select [file titles]
-                  :from titles
-                  :where (in file [,@files])]))
-    (org-roam-graph--build query)))
-
-;;;; Commands
-;;;###autoload
-(defun org-roam-graph (&optional arg file node-query)
-  "Build and possibly display a graph for FILE from NODE-QUERY.
-If FILE is nil, default to current buffer's file name.
-ARG may be any of the following values:
-  - nil       show the graph.
-  - `\\[universal-argument]'     show the graph for FILE.
-  - `\\[universal-argument]' N   show the graph for FILE limiting nodes to N steps.
-  - `\\[universal-argument] \\[universal-argument]' build the graph.
-  - `\\[universal-argument]' -   build the graph for FILE.
-  - `\\[universal-argument]' -N  build the graph for FILE limiting nodes to N steps."
-  (interactive "P")
-  (let ((file (or file (buffer-file-name (buffer-base-buffer)))))
-    (unless (or (not arg) (equal arg '(16)))
-      (unless file
-        (user-error "Cannot build graph for nil file. Is current buffer visiting a file?"))
-      (unless (org-roam--org-roam-file-p file)
-        (user-error "\"%s\" is not an org-roam file" file)))
-    (pcase arg
-      ('nil            (org-roam-graph--open (org-roam-graph--build node-query)))
-      ('(4)            (org-roam-graph--open (org-roam-graph--build-connected-component file)))
-      ((pred integerp) (let ((graph (org-roam-graph--build-connected-component file (abs arg))))
-                         (when (>= arg 0)
-                           (org-roam-graph--open graph))))
-      ('(16)           (org-roam-graph--build node-query))
-      ('-              (org-roam-graph--build-connected-component file))
-      (_ (user-error "Unrecognized ARG: %s" arg)))))
-
-(provide 'org-roam-graph)
-
-;;; org-roam-graph.el ends here

org-roam-id.el

@@ -0,0 +1,94 @@
+;;; org-roam-id.el --- ID-related utilities for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (magit-section "3.0.0"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This module provides ID-related facilities using the Org-roam database.
+;;
+;;; Code:
+(require 'org-id)
+
+(defun org-roam-id-at-point ()
+  "Return the ID at point, if any.
+Recursively traverses up the headline tree to find the
+first encapsulating ID."
+  (org-with-wide-buffer
+   (org-back-to-heading-or-point-min t)
+   (while (and (not (org-roam-db-node-p))
+               (not (bobp)))
+     (org-roam-up-heading-or-point-min))
+   (when (org-roam-db-node-p)
+     (org-id-get))))
+
+(defun org-roam-id-find (id &optional markerp)
+  "Return the location of the entry with the id ID using the Org-roam db.
+The return value is a cons cell (file-name . position), or nil
+if there is no entry with that ID.
+With optional argument MARKERP, return the position as a new marker."
+  (cond
+   ((symbolp id) (setq id (symbol-name id)))
+   ((numberp id) (setq id (number-to-string id))))
+  (let ((node (org-roam-populate (org-roam-node-create :id id))))
+    (when-let ((file (org-roam-node-file node)))
+      (if markerp
+          (let ((buffer (or (find-buffer-visiting file)
+                            (find-file-noselect file))))
+            (with-current-buffer buffer
+              (move-marker (make-marker) (org-roam-node-point node) buffer)))
+        (cons (org-roam-node-file node)
+              (org-roam-node-point node))))))
+
+(defalias 'org-roam-id-open 'org-id-open
+  "Obsolete alias - use `org-id-open' directly.")
+
+(advice-add 'org-id-find :before-until #'org-roam-id-find)
+
+;;;###autoload
+(defun org-roam-update-org-id-locations (&rest directories)
+  "Scan Org-roam files to update `org-id' related state.
+This is like `org-id-update-id-locations', but will automatically
+use the currently bound `org-directory' and `org-roam-directory'
+along with DIRECTORIES (if any), where the lookup for files in
+these directories will be always recursive.
+
+Note: Org-roam doesn't have hard dependency on
+`org-id-locations-file' to lookup IDs for nodes that are stored
+in the database, but it still tries to properly integrates with
+`org-id'. This allows the user to cross-reference IDs outside of
+the current `org-roam-directory', and also link with \"id:\"
+links to headings/files within the current `org-roam-directory'
+that are excluded from identification in Org-roam as
+`org-roam-node's, e.g. with \"ROAM_EXCLUDE\" property."
+  (interactive)
+  (cl-loop for dir in (cons org-roam-directory directories)
+           for org-roam-directory = dir
+           nconc (org-roam-list-files) into files
+           finally (org-id-update-id-locations files org-roam-verbose)))
+
+(provide 'org-roam-id)
+
+;;; org-roam-id.el ends here

org-roam-log.el

@@ -0,0 +1,53 @@
+;;; org-roam-log.el --- Integrations with Org-log -*- coding: utf-8; lexical-binding: t; -*-
+
+;; Copyright © 2022-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This module provides integrations with Org-log.
+;;
+;;; Code:
+(require 'org-roam)
+
+(defcustom org-roam-log-setup-hook nil
+  "Hook run when a log for an Org-roam file is setup."
+  :group 'org-roam
+  :type 'hook)
+
+(defun org-roam-log-p ()
+  "Return t if the log buffer is for an Org-roam file, nil otherwise."
+  (and org-log-note-marker
+       (org-roam-file-p (buffer-file-name (marker-buffer org-log-note-marker)))))
+
+(defun org-roam-log--setup ()
+  "Run hooks in `org-roam-log-setup-hook'."
+  (run-hooks 'org-roam-log-setup-hook))
+
+(add-hook 'org-roam-log-setup-hook #'org-roam--register-completion-functions-h)
+(add-hook 'org-log-buffer-setup-hook #'org-roam-log--setup)
+
+(provide 'org-roam-log)
+;;; org-roam-log.el ends here

org-roam-macs.el

@@ -1,69 +0,0 @@
-;;; org-roam-macs.el --- Macros/utility functions -*- coding: utf-8; lexical-binding: t; -*-
-
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (s "1.12.0") (org "9.3") (emacsql "3.0.0") (emacsql-sqlite "1.0.0"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; This library implements macros and utility functions used throughout
-;; org-roam.
-;;
-;;
-;;; Code:
-;;;; Library Requires
-
-(defvar org-roam-verbose)
-
-(defmacro org-roam--with-temp-buffer (&rest body)
-  "Execute BODY within a temp buffer.
-Like `with-temp-buffer', but propagates `org-roam-directory'."
-  (declare (indent 0) (debug t))
-  (let ((current-org-roam-directory (make-symbol "current-org-roam-directory")))
-    `(let ((,current-org-roam-directory org-roam-directory))
-       (with-temp-buffer
-         (let ((org-roam-directory ,current-org-roam-directory))
-           ,@body)))))
-
-(defmacro org-roam--with-template-error (templates &rest body)
-  "Eval BODY, and point to TEMPLATES on error.
-Provides more informative error messages so that users know where
-to look.
-
-\(fn TEMPLATES BODY...)"
-  (declare (debug (form body)) (indent 1))
-  `(condition-case err
-       ,@body
-     (error (user-error "%s.  Please adjust `%s'"
-                        (error-message-string err)
-                        ,templates))))
-
-(defun org-roam-message (format-string &rest args)
-  "Pass FORMAT-STRING and ARGS to `message' when `org-roam-verbose' is t."
-  (when org-roam-verbose
-    (apply #'message `(,(concat "(org-roam) " format-string) ,@args))))
-
-(provide 'org-roam-macs)
-
-;;; org-roam-macs.el ends here

org-roam-migrate.el

@@ -0,0 +1,168 @@
+;;; org-roam-migrate.el --- Migration utilities from v1 to v2 -*- coding: utf-8; lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This is a special library provided for the v1 users of this package. It's
+;; purpose is to ease the transition from v1 to v2, by providing migration
+;; utilities to convert from v1 notes to v2 nodes.
+;;
+;;; Code:
+(require 'org-roam)
+
+;;; Migration wizard (v1 -> v2)
+;;;###autoload
+(defun org-roam-migrate-wizard ()
+  "Migrate all notes from to be compatible with Org-roam v2.
+1. Convert all notes from v1 format to v2.
+2. Rebuild the cache.
+3. Replace all file links with ID links."
+  (interactive)
+  (when (yes-or-no-p "Org-roam will now convert all your notes from v1 to v2.
+This will take a while. Are you sure you want to do this?")
+    ;; Back up notes
+    (let ((backup-dir (expand-file-name "org-roam.bak"
+                                        (file-name-directory (directory-file-name org-roam-directory)))))
+      (message "Backing up files to %s" backup-dir)
+      (copy-directory org-roam-directory backup-dir))
+
+    ;; Upgrade database to v2
+    (org-roam-db-sync 'force)
+
+    ;; Convert v1 to v2
+    (dolist (f (org-roam-list-files))
+      (org-roam-with-file f nil
+        (org-roam-migrate-v1-to-v2)))
+
+    ;; Rebuild cache
+    (org-roam-db-sync 'force)
+
+    ;;Replace all file links with ID links
+    (dolist (f (org-roam-list-files))
+      (org-roam-with-file f nil
+        (org-roam-migrate-replace-file-links-with-id)
+        (save-buffer)))))
+
+(defun org-roam-migrate-v1-to-v2 ()
+  "Convert the current buffer to v2 format."
+  ;; Create file level ID
+  (org-with-point-at 1
+    (org-id-get-create))
+  ;; Replace roam_key into properties drawer roam_ref
+  (when-let* ((refs (mapcan #'split-string-and-unquote
+                            (cdar (org-collect-keywords '("roam_key"))))))
+    (let ((case-fold-search t))
+      (org-with-point-at 1
+        (dolist (ref refs)
+          (org-roam-ref-add ref))
+        (while (re-search-forward "^#\\+roam_key:" (point-max) t)
+          (beginning-of-line)
+          (kill-line 1)))))
+
+  ;; Replace roam_alias into properties drawer roam_aliases
+  (when-let* ((aliases (mapcan #'split-string-and-unquote
+                               (cdar (org-collect-keywords '("roam_alias"))))))
+    (dolist (alias aliases)
+      (org-roam-alias-add alias)))
+  (let ((case-fold-search t))
+    (org-with-point-at 1
+      (while (re-search-forward "^#\\+roam_alias:" (point-max) t)
+        (beginning-of-line)
+        (kill-line 1))))
+
+  ;; Replace #+roam_tags into #+filetags
+  (org-with-point-at 1
+    (let* ((roam-tags (org-roam-migrate-get-prop-list "ROAM_TAGS"))
+           (file-tags (cl-mapcan (lambda (value)
+                                   (cl-mapcan
+                                    (lambda (k) (org-split-string k ":"))
+                                    (split-string value)))
+                                 (org-roam-migrate-get-prop-list "FILETAGS")))
+           (tags (append roam-tags file-tags))
+           (tags (seq-map (lambda (tag)
+                            (replace-regexp-in-string
+                             "[^[:alnum:]_@#%]"
+                             "_"
+                             tag)) tags))
+           (tags (seq-uniq tags)))
+      (when tags
+        (org-roam-migrate-prop-set "filetags" (org-make-tag-string tags))))
+    (let ((case-fold-search t))
+      (org-with-point-at 1
+        (while (re-search-forward "^#\\+roam_tags:" (point-max) t)
+          (beginning-of-line)
+          (kill-line 1)))))
+  (save-buffer))
+
+(defun org-roam-migrate-get-prop-list (keyword)
+  "Return prop list for KEYWORD."
+  (let ((re (format "^#\\+%s:[ \t]*\\([^\n]+\\)" (upcase keyword)))
+        lst)
+    (goto-char (point-min))
+    (while (re-search-forward re 2048 t)
+      (setq lst (append lst (split-string-and-unquote
+                             (buffer-substring-no-properties
+                              (match-beginning 1) (match-end 1))))))
+    lst))
+
+(defun org-roam-migrate-prop-set (name value)
+  "Set a file property called NAME to VALUE in buffer file.
+If the property is already set, replace its value."
+  (setq name (downcase name))
+  (org-with-point-at 1
+    (let ((case-fold-search t))
+      (if (re-search-forward (concat "^#\\+" name ":\\(.*\\)")
+                             (point-max) t)
+          (replace-match (concat "#+" name ": " value) 'fixedcase)
+        (while (and (not (eobp))
+                    (looking-at "^[#:]"))
+          (if (save-excursion (end-of-line) (eobp))
+              (progn
+                (end-of-line)
+                (insert "\n"))
+            (forward-line)
+            (beginning-of-line)))
+        (insert "#+" name ": " value "\n")))))
+
+(defun org-roam-migrate-replace-file-links-with-id ()
+  "Replace all file: links with ID links in current buffer."
+  (org-with-point-at 1
+    (while (re-search-forward org-link-bracket-re nil t)
+      (let* ((mdata (match-data))
+             (path (match-string 1))
+             (desc (match-string 2)))
+        (when (string-prefix-p "file:" path)
+          (setq path (expand-file-name (substring path 5)))
+          (when-let ((node-id (caar (org-roam-db-query [:select [id] :from nodes
+                                                        :where (= file $s1)
+                                                        :and (= level 0)] path))))
+            (set-match-data mdata)
+            (replace-match (org-link-make-string (concat "id:" node-id)
+                                                 desc) nil t)))))))
+
+(provide 'org-roam-migrate)
+;;; org-roam-migrate.el ends here

org-roam-mode.el

@@ -0,0 +1,726 @@
+;;; org-roam-mode.el --- Major mode for special Org-roam buffers -*- lexical-binding: t -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This module implements `org-roam-mode', which is a major mode that used by
+;; special Org-roam buffers to display various content in a section-like manner
+;; about the nodes and relevant to them information (e.g. backlinks) with which
+;; the user can interact with.
+;;
+;;; Code:
+(require 'org-roam)
+
+;;;; Declarations
+(defvar org-ref-buffer-hacked)
+
+;;; Options
+(defcustom org-roam-mode-sections (list #'org-roam-backlinks-section
+                                        #'org-roam-reflinks-section)
+  "A list of sections for the `org-roam-mode' based buffers.
+Each section is a function that is passed the `org-roam-node'
+for which the section will be constructed as the first
+argument. Normally this node is `org-roam-buffer-current-node'.
+The function may also accept other optional arguments. Each item
+in the list is either:
+
+1. A function, which is called only with the `org-roam-node' as the argument
+2. A list, containing the function and the optional arguments.
+
+For example, one can add
+
+    (org-roam-backlinks-section :unique t)
+
+to the list to pass :unique t to the section-rendering function."
+  :group 'org-roam
+  :type `(repeat (choice (symbol :tag "Function")
+                         (list :tag "Function with arguments"
+                               (symbol :tag "Function")
+                               (repeat :tag "Arguments" :inline t (sexp :tag "Arg"))))))
+
+(defcustom org-roam-buffer-postrender-functions (list)
+  "Functions to run after the Org-roam buffer is rendered.
+Each function accepts no arguments, and is run with the Org-roam
+buffer as the current buffer."
+  :group 'org-roam
+  :type 'hook)
+
+(defcustom org-roam-preview-function #'org-roam-preview-default-function
+  "The preview function to use to populate the Org-roam buffer.
+
+The function takes no arguments, but the point is temporarily set
+to the exact location of the backlink."
+  :group 'org-roam
+  :type 'function)
+
+(defcustom org-roam-preview-postprocess-functions (list #'org-roam-strip-comments)
+  "A list of functions to postprocess the preview content.
+
+Each function takes a single argument, the string for the preview
+content, and returns the post-processed string. The functions are
+applied in order of appearance in the list."
+  :group 'org-roam
+  :type 'hook)
+
+;;; Faces
+(defface org-roam-header-line
+  `((((class color) (background light))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :foreground "DarkGoldenrod4"
+     :weight bold)
+    (((class color) (background  dark))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :foreground "LightGoldenrod2"
+     :weight bold))
+  "Face for the `header-line' in some Org-roam modes."
+  :group 'org-roam-faces)
+
+(defface org-roam-title
+  '((t :weight bold))
+  "Face for Org-roam titles."
+  :group 'org-roam-faces)
+
+(defface org-roam-olp
+  '((((class color) (background light)) :foreground "grey60")
+    (((class color) (background  dark)) :foreground "grey40"))
+  "Face for the OLP of the node."
+  :group 'org-roam-faces)
+
+(defface org-roam-preview-heading
+  `((((class color) (background light))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :background "grey80"
+     :foreground "grey30")
+    (((class color) (background dark))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :background "grey25"
+     :foreground "grey70"))
+  "Face for preview headings."
+  :group 'org-roam-faces)
+
+(defface org-roam-preview-heading-highlight
+  `((((class color) (background light))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :background "grey75"
+     :foreground "grey30")
+    (((class color) (background dark))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :background "grey35"
+     :foreground "grey70"))
+  "Face for current preview headings."
+  :group 'org-roam-faces)
+
+(defface org-roam-preview-heading-selection
+  `((((class color) (background light))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :inherit org-roam-preview-heading-highlight
+     :foreground "salmon4")
+    (((class color) (background dark))
+     ,@(and (>= emacs-major-version 27) '(:extend t))
+     :inherit org-roam-preview-heading-highlight
+     :foreground "LightSalmon3"))
+  "Face for selected preview headings."
+  :group 'org-roam-faces)
+
+(defface org-roam-preview-region
+  `((t :inherit bold
+       ,@(and (>= emacs-major-version 27)
+              (list :extend (ignore-errors (face-attribute 'region :extend))))))
+  "Face used by `org-roam-highlight-preview-region-using-face'.
+
+This face is overlaid over text that uses other hunk faces,
+and those normally set the foreground and background colors.
+The `:foreground' and especially the `:background' properties
+should be avoided here.  Setting the latter would cause the
+loss of information.  Good properties to set here are `:weight'
+and `:slant'."
+  :group 'org-roam-faces)
+
+(defface org-roam-dim
+  '((((class color) (background light)) :foreground "grey60")
+    (((class color) (background  dark)) :foreground "grey40"))
+  "Face for the dimmer part of the widgets."
+  :group 'org-roam-faces)
+
+;;; Major mode
+(defvar org-roam-mode-map
+  (let ((map (make-sparse-keymap)))
+    (set-keymap-parent map magit-section-mode-map)
+    (define-key map [C-return]  'org-roam-buffer-visit-thing)
+    (define-key map (kbd "C-m") 'org-roam-buffer-visit-thing)
+    (define-key map [remap revert-buffer] 'org-roam-buffer-refresh)
+    map)
+  "Parent keymap for all keymaps of modes derived from `org-roam-mode'.")
+
+(define-derived-mode org-roam-mode magit-section-mode "Org-roam"
+  "Major mode for displaying relevant information about Org-roam nodes.
+This mode is used by special Org-roam buffers, such as persistent
+`org-roam-buffer' and dedicated Org-roam buffers
+\(`org-roam-buffer-display-dedicated'), which render the
+information in a section-like manner (see
+`org-roam-mode-sections'), with which the user can
+interact with."
+  :group 'org-roam
+  (face-remap-add-relative 'header-line 'org-roam-header-line))
+
+;;; Buffers
+(defvar org-roam-buffer-current-node nil
+  "The node for which an `org-roam-mode' based buffer displays its contents.
+This set both, locally and globally. Normally the local value is
+only set in the `org-roam-mode' based buffers, while the global
+value shows the current node in the persistent `org-roam-buffer'.")
+
+(put 'org-roam-buffer-current-node 'permanent-local t)
+
+(defvar org-roam-buffer-current-directory nil
+  "The `org-roam-directory' value of `org-roam-buffer-current-node'.
+Set both, locally and globally in the same way as
+`org-roam-buffer-current-node'.")
+
+(put 'org-roam-buffer-current-directory 'permanent-local t)
+
+;;;; Library
+(defun org-roam-buffer-visit-thing ()
+  "This is a placeholder command.
+Where applicable, section-specific keymaps bind another command
+which visits the thing at point."
+  (interactive)
+  (user-error "There is no thing at point that could be visited"))
+
+(defun org-roam-buffer-file-at-point (&optional assert)
+  "Return the file at point in the current `org-roam-mode' based buffer.
+If ASSERT, throw an error."
+  (if-let ((file (magit-section-case
+                   (org-roam-node-section (org-roam-node-file (oref it node)))
+                   (org-roam-grep-section (oref it file))
+                   (org-roam-preview-section (oref it file))
+                   (t (cl-assert (derived-mode-p 'org-roam-mode))))))
+      file
+    (when assert
+      (user-error "No file at point"))))
+
+(defun org-roam-buffer-refresh ()
+  "Refresh the contents of the currently selected Org-roam buffer."
+  (interactive)
+  (cl-assert (derived-mode-p 'org-roam-mode))
+  (save-excursion (org-roam-buffer-render-contents)))
+
+(defun org-roam-buffer-render-contents ()
+  "Recompute and render the contents of an Org-roam buffer.
+Assumes that the current buffer is an `org-roam-mode' based
+buffer."
+  (let ((inhibit-read-only t))
+    (erase-buffer)
+    (org-roam-mode)
+    (setq-local default-directory org-roam-buffer-current-directory)
+    (setq-local org-roam-directory org-roam-buffer-current-directory)
+    (org-roam-buffer-set-header-line-format
+     (org-roam-node-title org-roam-buffer-current-node))
+    (magit-insert-section (org-roam)
+      (magit-insert-heading)
+      (dolist (section org-roam-mode-sections)
+        (pcase section
+          ((pred functionp)
+           (funcall section org-roam-buffer-current-node))
+          (`(,fn . ,args)
+           (apply fn (cons org-roam-buffer-current-node args)))
+          (_
+           (user-error "Invalid `org-roam-mode-sections' specification")))))
+    (run-hooks 'org-roam-buffer-postrender-functions)
+    (goto-char 0)))
+
+(defun org-roam-buffer-set-header-line-format (string)
+  "Set the header-line using STRING.
+If the `face' property of any part of STRING is already set, then
+that takes precedence. Also pad the left side of STRING so that
+it aligns with the text area."
+  (setq-local header-line-format
+              (concat (propertize " " 'display '(space :align-to 0))
+                      string)))
+
+;;;; Dedicated buffer
+;;;###autoload
+(defun org-roam-buffer-display-dedicated (node)
+  "Launch NODE dedicated Org-roam buffer.
+Unlike the persistent `org-roam-buffer', the contents of this
+buffer won't be automatically changed and will be held in place.
+
+In interactive calls prompt to select NODE, unless called with
+`universal-argument', in which case NODE will be set to
+`org-roam-node-at-point'."
+  (interactive
+   (list (if current-prefix-arg
+             (org-roam-node-at-point 'assert)
+           (org-roam-node-read nil nil nil 'require-match))))
+  (let ((buffer (get-buffer-create (org-roam-buffer--dedicated-name node))))
+    (with-current-buffer buffer
+      (setq-local org-roam-buffer-current-node node)
+      (setq-local org-roam-buffer-current-directory org-roam-directory)
+      (org-roam-buffer-render-contents))
+    (display-buffer buffer)))
+
+(defun org-roam-buffer--dedicated-name (node)
+  "Construct buffer name for NODE dedicated Org-roam buffer."
+  (let ((title (org-roam-node-title node))
+        (filename (file-relative-name (org-roam-node-file node) org-roam-directory)))
+    (format "*org-roam: %s<%s>*" title filename)))
+
+(defun org-roam-buffer-dedicated-p (&optional buffer)
+  "Return t if an Org-roam BUFFER is a node dedicated one.
+See `org-roam-buffer-display-dedicated' for more details.
+If BUFFER is nil, default it to `current-buffer'."
+  (or buffer (setq buffer (current-buffer)))
+  (string-match-p (concat "^" (regexp-quote "*org-roam: "))
+                  (buffer-name buffer)))
+
+;;;; Persistent buffer
+(defvar org-roam-buffer "*org-roam*"
+  "The persistent Org-roam buffer name. Must be surround with \"*\".
+The content inside of this buffer will be automatically updated
+to the nearest node at point that comes from the current buffer.
+To toggle its display use `org-roam-buffer-toggle' command.")
+
+(defun org-roam-buffer-toggle ()
+  "Toggle display of the persistent `org-roam-buffer'."
+  (interactive)
+  (pcase (org-roam-buffer--visibility)
+    ('visible
+     (progn
+       (quit-window nil (get-buffer-window org-roam-buffer))
+       (remove-hook 'post-command-hook #'org-roam-buffer--redisplay-h)))
+    ((or 'exists 'none)
+     (progn
+       (display-buffer (get-buffer-create org-roam-buffer))
+       (org-roam-buffer-persistent-redisplay)))))
+
+(define-inline org-roam-buffer--visibility ()
+  "Return the current visibility state of the persistent `org-roam-buffer'.
+Valid states are `visible', `exists' and `none'."
+  (declare (side-effect-free t))
+  (inline-quote
+   (cond
+    ((get-buffer-window org-roam-buffer) 'visible)
+    ((get-buffer org-roam-buffer) 'exists)
+    (t 'none))))
+
+(defun org-roam-buffer-persistent-redisplay ()
+  "Recompute contents of the persistent `org-roam-buffer'.
+Has no effect when there's no `org-roam-node-at-point'."
+  (when-let ((node (org-roam-node-at-point)))
+    (unless (equal node org-roam-buffer-current-node)
+      (setq org-roam-buffer-current-node node
+            org-roam-buffer-current-directory org-roam-directory)
+      (with-current-buffer (get-buffer-create org-roam-buffer)
+        (org-roam-buffer-render-contents)
+        (add-hook 'kill-buffer-hook #'org-roam-buffer--persistent-cleanup-h nil t)))))
+
+(defun org-roam-buffer--persistent-cleanup-h ()
+  "Clean-up global state that's dedicated for the persistent `org-roam-buffer'."
+  (setq-default org-roam-buffer-current-node nil
+                org-roam-buffer-current-directory nil))
+
+(add-hook 'org-roam-find-file-hook #'org-roam-buffer--setup-redisplay-h)
+(defun org-roam-buffer--setup-redisplay-h ()
+  "Setup automatic redisplay of the persistent `org-roam-buffer'."
+  (add-hook 'post-command-hook #'org-roam-buffer--redisplay-h nil t))
+
+(defun org-roam-buffer--redisplay-h ()
+  "Reconstruct the persistent `org-roam-buffer'.
+This needs to be quick or infrequent, because this designed to
+run at `post-command-hook'."
+  (and (get-buffer-window org-roam-buffer)
+       (org-roam-buffer-persistent-redisplay)))
+
+;;; Sections
+;;;; Node
+(defvar org-roam-node-map
+  (let ((map (make-sparse-keymap)))
+    (set-keymap-parent map org-roam-mode-map)
+    (define-key map [remap org-roam-buffer-visit-thing] 'org-roam-node-visit)
+    map)
+  "Keymap for `org-roam-node-section's.")
+
+(defclass org-roam-node-section (magit-section)
+  ((keymap :initform 'org-roam-node-map)
+   (node :initform nil))
+  "A `magit-section' used by `org-roam-mode' to outline NODE in its own heading.")
+
+(cl-defun org-roam-node-insert-section (&key source-node point properties)
+  "Insert section for a link from SOURCE-NODE to some other node.
+The other node is normally `org-roam-buffer-current-node'.
+
+SOURCE-NODE is an `org-roam-node' that links or references with
+the other node.
+
+POINT is a character position where the link is located in
+SOURCE-NODE's file.
+
+PROPERTIES (a plist) contains additional information about the
+link.
+
+Despite the name, this function actually inserts 2 sections at
+the same time:
+
+1. `org-roam-node-section' for a heading that describes
+   SOURCE-NODE. Acts as a parent section of the following one.
+
+2. `org-roam-preview-section' for a preview content that comes
+   from SOURCE-NODE's file for the link (that references the
+   other node) at POINT. Acts a child section of the previous
+   one."
+  (magit-insert-section section (org-roam-node-section)
+    (let ((outline (if-let ((outline (plist-get properties :outline)))
+                       (mapconcat #'org-link-display-format outline " > ")
+                     "Top")))
+      (insert (concat (propertize (org-roam-node-title source-node)
+                                  'font-lock-face 'org-roam-title)
+                      (format " (%s)"
+                              (propertize outline 'font-lock-face 'org-roam-olp)))))
+    (magit-insert-heading)
+    (oset section node source-node)
+    (magit-insert-section section (org-roam-preview-section)
+      (insert (org-roam-fontify-like-in-org-mode
+               (org-roam-preview-get-contents (org-roam-node-file source-node) point))
+              "\n")
+      (oset section file (org-roam-node-file source-node))
+      (oset section point point)
+      (insert ?\n))))
+
+;;;; Preview
+(defvar org-roam-preview-map
+  (let ((map (make-sparse-keymap)))
+    (set-keymap-parent map org-roam-mode-map)
+    (define-key map [remap org-roam-buffer-visit-thing] 'org-roam-preview-visit)
+    map)
+  "Keymap for `org-roam-preview-section's.")
+
+(defclass org-roam-preview-section (magit-section)
+  ((keymap :initform 'org-roam-preview-map)
+   (file :initform nil)
+   (point :initform nil))
+  "A `magit-section' used by `org-roam-mode' to contain preview content.
+The preview content comes from FILE, and the link as at POINT.")
+
+(defun org-roam-preview-visit (file point &optional other-window)
+  "Visit FILE at POINT and return the visited buffer.
+With OTHER-WINDOW non-nil do so in another window.
+In interactive calls OTHER-WINDOW is set with
+`universal-argument'."
+  (interactive (list (org-roam-buffer-file-at-point 'assert)
+                     (oref (magit-current-section) point)
+                     current-prefix-arg))
+  (let ((buf (find-file-noselect file))
+        (display-buffer-fn (if other-window
+                               #'switch-to-buffer-other-window
+                             #'pop-to-buffer-same-window)))
+    (funcall display-buffer-fn buf)
+    (with-current-buffer buf
+      (widen)
+      (goto-char point))
+    (when (org-invisible-p) (org-fold-show-context))
+    buf))
+
+(defun org-roam-preview-default-function ()
+  "Return the preview content at point.
+
+This function returns the all contents under the current
+headline, up to the next headline."
+  (let ((beg (save-excursion
+               (org-roam-end-of-meta-data t)
+               (point)))
+        (end (save-excursion
+               (org-next-visible-heading 1)
+               (point))))
+    (string-trim (buffer-substring-no-properties beg end))))
+
+(defun org-roam-preview-get-contents (file pt)
+  "Get preview content for FILE at PT."
+  (save-excursion
+    (org-roam-with-temp-buffer file
+      (org-with-wide-buffer
+       (goto-char pt)
+       (let ((s (funcall org-roam-preview-function)))
+         (dolist (fn org-roam-preview-postprocess-functions)
+           (setq s (funcall fn s)))
+         s)))))
+
+;;;; Backlinks
+(cl-defstruct (org-roam-backlink (:constructor org-roam-backlink-create)
+                                 (:copier nil))
+  source-node target-node
+  point properties)
+
+(cl-defmethod org-roam-populate ((backlink org-roam-backlink))
+  "Populate BACKLINK from database."
+  (setf (org-roam-backlink-source-node backlink)
+        (org-roam-populate (org-roam-backlink-source-node backlink))
+        (org-roam-backlink-target-node backlink)
+        (org-roam-populate (org-roam-backlink-target-node backlink)))
+  backlink)
+
+(cl-defun org-roam-backlinks-get (node &key unique)
+  "Return the backlinks for NODE.
+
+ When UNIQUE is nil, show all positions where references are found.
+ When UNIQUE is t, limit to unique sources."
+  (let* ((sql (if unique
+                  [:select :distinct [source dest pos properties]
+                   :from links
+                   :where (= dest $s1)
+                   :and (= type "id")
+                   :group :by source
+                   :having (funcall min pos)]
+                [:select [source dest pos properties]
+                 :from links
+                 :where (= dest $s1)
+                 :and (= type "id")]))
+         (backlinks (org-roam-db-query sql (org-roam-node-id node))))
+    (cl-loop for backlink in backlinks
+             collect (pcase-let ((`(,source-id ,dest-id ,pos ,properties) backlink))
+                       (org-roam-populate
+                        (org-roam-backlink-create
+                         :source-node (org-roam-node-create :id source-id)
+                         :target-node (org-roam-node-create :id dest-id)
+                         :point pos
+                         :properties properties))))))
+
+(defun org-roam-backlinks-sort (a b)
+  "Default sorting function for backlinks A and B.
+Sorts by title."
+  (string< (org-roam-node-title (org-roam-backlink-source-node a))
+           (org-roam-node-title (org-roam-backlink-source-node b))))
+
+(cl-defun org-roam-backlinks-section (node &key (unique nil) (show-backlink-p nil)
+                                           (section-heading "Backlinks:"))
+  "The backlinks section for NODE.
+
+When UNIQUE is nil, show all positions where references are found.
+When UNIQUE is t, limit to unique sources.
+
+When SHOW-BACKLINK-P is not null, only show backlinks for which
+this predicate is not nil.
+
+SECTION-HEADING is the string used as a heading for the backlink section."
+  (when-let ((backlinks (seq-sort #'org-roam-backlinks-sort (org-roam-backlinks-get node :unique unique))))
+    (magit-insert-section (org-roam-backlinks)
+      (magit-insert-heading section-heading)
+      (dolist (backlink backlinks)
+        (when (or (null show-backlink-p)
+                  (and (not (null show-backlink-p))
+                       (funcall show-backlink-p backlink)))
+          (org-roam-node-insert-section
+           :source-node (org-roam-backlink-source-node backlink)
+           :point (org-roam-backlink-point backlink)
+           :properties (org-roam-backlink-properties backlink))))
+      (insert ?\n))))
+
+;;;; Reflinks
+(cl-defstruct (org-roam-reflink (:constructor org-roam-reflink-create)
+                                (:copier nil))
+  source-node ref
+  point properties)
+
+(cl-defmethod org-roam-populate ((reflink org-roam-reflink))
+  "Populate REFLINK from database."
+  (setf (org-roam-reflink-source-node reflink)
+        (org-roam-populate (org-roam-reflink-source-node reflink)))
+  reflink)
+
+(defun org-roam-reflinks-get (node)
+  "Return the reflinks for NODE."
+  (let ((refs (org-roam-db-query [:select :distinct [refs:ref links:source links:pos links:properties]
+                                  :from refs
+                                  :left-join links
+                                  :where (= refs:node-id $s1)
+                                  :and (= links:dest refs:ref)
+                                  :union
+                                  :select :distinct [refs:ref citations:node-id
+                                                     citations:pos citations:properties]
+                                  :from refs
+                                  :left-join citations
+                                  :where (= refs:node-id $s1)
+                                  :and (= citations:cite-key refs:ref)]
+                                 (org-roam-node-id node)))
+        links)
+    (pcase-dolist (`(,ref ,source-id ,pos ,properties) refs)
+      (push (org-roam-populate
+             (org-roam-reflink-create
+              :source-node (org-roam-node-create :id source-id)
+              :ref ref
+              :point pos
+              :properties properties)) links))
+    links))
+
+(defun org-roam-reflinks-sort (a b)
+  "Default sorting function for reflinks A and B.
+Sorts by title."
+  (string< (org-roam-node-title (org-roam-reflink-source-node a))
+           (org-roam-node-title (org-roam-reflink-source-node b))))
+
+(defun org-roam-reflinks-section (node)
+  "The reflinks section for NODE."
+  (when-let ((refs (org-roam-node-refs node))
+             (reflinks (seq-sort #'org-roam-reflinks-sort (org-roam-reflinks-get node))))
+    (magit-insert-section (org-roam-reflinks)
+      (magit-insert-heading "Reflinks:")
+      (dolist (reflink reflinks)
+        (org-roam-node-insert-section
+         :source-node (org-roam-reflink-source-node reflink)
+         :point (org-roam-reflink-point reflink)
+         :properties (org-roam-reflink-properties reflink)))
+      (insert ?\n))))
+
+;;;; Grep
+(defvar org-roam-grep-map
+  (let ((map (make-sparse-keymap)))
+    (set-keymap-parent map org-roam-mode-map)
+    (define-key map [remap org-roam-buffer-visit-thing] 'org-roam-grep-visit)
+    map)
+  "Keymap for Org-roam grep result sections.")
+
+(defclass org-roam-grep-section (magit-section)
+  ((keymap :initform 'org-roam-grep-map)
+   (file :initform nil)
+   (row :initform nil)
+   (col :initform nil))
+  "A `magit-section' used by `org-roam-mode' to contain grep output.")
+
+(defun org-roam-grep-visit (file &optional other-window row col)
+  "Visit FILE at row ROW (if any) and column COL (if any). Return the buffer.
+With OTHER-WINDOW non-nil (in interactive calls set with
+`universal-argument') display the buffer in another window
+instead."
+  (interactive (list (org-roam-buffer-file-at-point t)
+                     current-prefix-arg
+                     (oref (magit-current-section) row)
+                     (oref (magit-current-section) col)))
+  (let ((buf (find-file-noselect file))
+        (display-buffer-fn (if other-window
+                               #'switch-to-buffer-other-window
+                             #'pop-to-buffer-same-window)))
+    (funcall display-buffer-fn buf)
+    (with-current-buffer buf
+      (widen)
+      (goto-char (point-min))
+      (when row
+        (forward-line (1- row)))
+      (when col
+        (forward-char (1- col))))
+    (when (org-invisible-p) (org-fold-show-context))
+    buf))
+
+;;;; Unlinked references
+(defvar org-roam-unlinked-references-result-re
+  (rx (group (one-or-more anything))
+      ":"
+      (group (one-or-more digit))
+      ":"
+      (group (one-or-more digit))
+      ":"
+      (group (zero-or-more anything)))
+  "Regex for the return result of a ripgrep query.")
+
+(defun org-roam-unlinked-references-preview-line (file row)
+  "Return the preview line from FILE.
+This is the ROW within FILE."
+  (with-temp-buffer
+    (insert-file-contents file)
+    (forward-line (1- row))
+    (buffer-substring-no-properties
+     (save-excursion
+       (beginning-of-line)
+       (point))
+     (save-excursion
+       (end-of-line)
+       (point)))))
+
+(defun org-roam-unlinked-references--rg-command (titles temp-file)
+  "Return the ripgrep command searching for TITLES using TEMP-FILE for pattern.
+This avoids shell escaping issues by writing the pattern to a file instead
+of passing it directly through the shell command line."
+  ;; Write pattern to temp file to avoid shell escaping issues with quotes,
+  ;; spaces, and other special characters in titles
+  (with-temp-file temp-file
+    (insert "\\[([^[]]++|(?R))*\\]"
+            (mapconcat (lambda (title)
+                         ;; Use regexp-quote instead of shell-quote-argument
+                         ;; since we're writing a regex pattern, not a shell argument
+                         (format "|(\\b%s\\b)" (regexp-quote title)))
+                       titles "")))
+
+  (concat "rg --follow --only-matching --vimgrep --pcre2 --ignore-case "
+          (mapconcat (lambda (glob) (concat "--glob " glob))
+                     (org-roam--list-files-search-globs org-roam-file-extensions)
+                     " ")
+          " --file " (shell-quote-argument temp-file) " "
+          (shell-quote-argument (expand-file-name org-roam-directory))))
+
+(defun org-roam-unlinked-references-section (node)
+  "The unlinked references section for NODE.
+References from FILE are excluded."
+  (when (and (executable-find "rg")
+             (org-roam-node-title node)
+             (not (string-match "PCRE2 is not available"
+                                (shell-command-to-string "rg --pcre2-version"))))
+    (let* ((titles (cons (org-roam-node-title node)
+                         (org-roam-node-aliases node)))
+           ;; Create temp file for the regex pattern
+           (temp-file (make-temp-file "org-roam-rg-pattern-"))
+           (rg-command (org-roam-unlinked-references--rg-command titles temp-file)))
+      ;; Use unwind-protect to ensure temp file cleanup even if errors occur
+      (unwind-protect
+          (let* ((results (split-string (shell-command-to-string rg-command) "\n"))
+                 f row col match)
+            (magit-insert-section (unlinked-references)
+              (magit-insert-heading "Unlinked References:")
+              (dolist (line results)
+                (save-match-data
+                  (when (string-match org-roam-unlinked-references-result-re line)
+                    (setq f (match-string 1 line)
+                          row (string-to-number (match-string 2 line))
+                          col (string-to-number (match-string 3 line))
+                          match (match-string 4 line))
+                    (when (and match
+                               (not (file-equal-p (org-roam-node-file node) f))
+                               (member (downcase match) (mapcar #'downcase titles)))
+                      (magit-insert-section section (org-roam-grep-section)
+                        (oset section file f)
+                        (oset section row row)
+                        (oset section col col)
+                        (insert (propertize (format "%s:%s:%s"
+                                                    (truncate-string-to-width (file-name-base f) 15 nil nil t)
+                                                    row col) 'font-lock-face 'org-roam-dim)
+                                " "
+                                (org-roam-fontify-like-in-org-mode
+                                 (org-roam-unlinked-references-preview-line f row))
+                                "\n"))))))
+              (insert ?\n)))
+        ;; Clean up temp file - this runs even if an error occurs above
+        (delete-file temp-file)))))
+
+(provide 'org-roam-mode)
+;;; org-roam-mode.el ends here

org-roam-protocol.el

@@ -1,91 +0,0 @@
-;;; org-roam-protocol.el --- Protocol handler for roam:// links  -*- coding: utf-8; lexical-binding: t; -*-
-
-;; Copyright © 2020 Jethro Kuan <jethrokuan95@gmail.com>
-;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; URL: https://github.com/org-roam/org-roam
-;; Keywords: org-mode, roam, convenience
-;; Version: 1.1.1
-;; Package-Requires: ((emacs "26.1") (org "9.3"))
-
-;; This file is NOT part of GNU Emacs.
-
-;; This program is free software; you can redistribute it and/or modify
-;; it under the terms of the GNU General Public License as published by
-;; the Free Software Foundation; either version 3, or (at your option)
-;; any later version.
-;;
-;; This program is distributed in the hope that it will be useful,
-;; but WITHOUT ANY WARRANTY; without even the implied warranty of
-;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;; GNU General Public License for more details.
-;;
-;; You should have received a copy of the GNU General Public License
-;; along with GNU Emacs; see the file COPYING.  If not, write to the
-;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
-;; Boston, MA 02110-1301, USA.
-
-;;; Commentary:
-;;
-;; We extend org-protocol, adding custom Org-roam handlers. The setup
-;; instructions for `org-protocol' can be found in org-protocol.el.
-;;
-;; We define 2 protocols:
-;;
-;; 1. "roam-file": This protocol simply opens the file given by the FILE key
-;; 2. "roam-ref": This protocol creates or opens a note with the given REF
-;;
-;;; Code:
-(require 'org-protocol)
-(require 'org-roam)
-
-;;;; Functions
-(defun org-roam-protocol-open-ref (info)
-  "Process an org-protocol://roam-ref?ref= style url with INFO.
-
-It opens or creates a note with the given ref.
-
-  javascript:location.href = \\='org-protocol://roam-ref?template=r&ref=\\='+ \\
-        encodeURIComponent(location.href) + \\='&title=\\=' \\
-        encodeURIComponent(document.title) + \\='&body=\\=' + \\
-        encodeURIComponent(window.getSelection())"
-  (when-let* ((alist (org-roam--plist-to-alist info))
-              (decoded-alist (mapcar (lambda (k.v)
-                                       (let ((key (car k.v))
-                                             (val (cdr k.v)))
-                                         (cons key (org-link-decode val)))) alist)))
-    (unless (assoc 'ref decoded-alist)
-      (error "No ref key provided"))
-    (when-let ((title (cdr (assoc 'title decoded-alist))))
-      (push (cons 'slug (org-roam--title-to-slug title)) decoded-alist))
-    (let* ((org-roam-capture-templates org-roam-capture-ref-templates)
-           (org-roam-capture--context 'ref)
-           (org-roam-capture--info decoded-alist)
-           (template (cdr (assoc 'template decoded-alist))))
-      (raise-frame)
-      (org-roam--with-template-error 'org-roam-capture-ref-templates
-        (org-roam-capture--capture nil template))
-      (org-roam-message "Item captured.")))
-  nil)
-
-(defun org-roam-protocol-open-file (info)
-  "This handler simply opens the file with emacsclient.
-
-INFO is an alist containing additional information passed by the protocol URL.
-It should contain the FILE key, pointing to the path of the file to open.
-
-  Example protocol string:
-
-org-protocol://roam-file?file=/path/to/file.org"
-  (when-let ((file (plist-get info :file)))
-    (raise-frame)
-    (find-file file))
-  nil)
-
-(push '("org-roam-ref"  :protocol "roam-ref"   :function org-roam-protocol-open-ref)
-      org-protocol-protocol-alist)
-(push '("org-roam-file"  :protocol "roam-file"   :function org-roam-protocol-open-file)
-      org-protocol-protocol-alist)
-
-(provide 'org-roam-protocol)
-
-;;; org-roam-protocol.el ends here

org-roam-utils.el

@@ -0,0 +1,459 @@
+;;; org-roam-utils.el --- Utilities for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright © 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; URL: https://github.com/org-roam/org-roam
+;; Keywords: org-mode, roam, convenience
+;; Version: 2.3.1
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6"))
+
+;; This file is NOT part of GNU Emacs.
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation; either version 3, or (at your option)
+;; any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs; see the file COPYING.  If not, write to the
+;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
+;; Boston, MA 02110-1301, USA.
+
+;;; Commentary:
+;;
+;; This library provides definitions for utilities that used throughout the
+;; whole package.
+;;
+;;; Code:
+
+(require 'org-roam)
+
+(defun org-roam-require (libs)
+  "Require LIBS."
+  (dolist (lib libs)
+    (require lib nil 'noerror)))
+
+;;; String utilities
+;; TODO Refactor this.
+(defun org-roam-replace-string (old new s)
+  "Replace OLD with NEW in S."
+  (declare (pure t) (side-effect-free t))
+  (replace-regexp-in-string (regexp-quote old) new s t t))
+
+(defun org-roam-quote-string (s)
+  "Quotes string S."
+  (->> s
+       (org-roam-replace-string "\\" "\\\\")
+       (org-roam-replace-string "\"" "\\\"")))
+
+(defun org-roam-word-wrap (len s)
+  "If S is longer than LEN, wrap the words with newlines."
+  (declare (side-effect-free t))
+  (save-match-data
+    (with-temp-buffer
+      (insert s)
+      (let ((fill-column len))
+        (fill-region (point-min) (point-max)))
+      (buffer-substring (point-min) (point-max)))))
+
+(defun org-roam-string-equal (s1 s2)
+  "Return t if S1 and S2 are equal.
+Like `string-equal', but case-insensitive."
+  (and (= (length s1) (length s2))
+       (or (string-equal s1 s2)
+           (string-equal (downcase s1) (downcase s2)))))
+
+(defun org-roam-whitespace-content (s)
+  "Return the whitespace content at the end of S."
+  (with-temp-buffer
+    (insert s)
+    (skip-chars-backward " \t\n")
+    (buffer-substring-no-properties
+     (point) (point-max))))
+
+(defun org-roam-strip-comments (s)
+  "Strip Org comments from string S."
+  (with-temp-buffer
+    (insert s)
+    (goto-char (point-min))
+    (while (not (eobp))
+      (if (org-at-comment-p)
+          (delete-region (line-beginning-position)
+                         (progn (forward-line) (point)))
+        (forward-line)))
+    (buffer-string)))
+
+;;; List utilities
+(defun org-roam-plist-map! (fn plist)
+  "Map FN over PLIST, modifying it in-place and returning it.
+FN must take two arguments: the key and the value."
+  (let ((plist-index plist))
+    (while plist-index
+      (let ((key (pop plist-index)))
+        (setf (car plist-index) (funcall fn key (car plist-index))
+              plist-index (cdr plist-index)))))
+  plist)
+
+(defmacro org-roam-dolist-with-progress (spec msg &rest body)
+  "Loop over a list and report progress in the echo area.
+Like `dolist-with-progress-reporter', but falls back to `dolist'
+if the function does not yet exist.
+
+Evaluate BODY with VAR bound to each car from LIST, in turn.
+Then evaluate RESULT to get return value, default nil.
+
+MSG is a progress reporter object or a string.  In the latter
+case, use this string to create a progress reporter.
+
+SPEC is a list, as per `dolist'."
+  (declare (indent 2))
+  (if (fboundp 'dolist-with-progress-reporter)
+      `(dolist-with-progress-reporter ,spec ,msg ,@body)
+    `(dolist ,spec ,@body)))
+
+;;; File utilities
+(defun org-roam-descendant-of-p (a b)
+  "Return t if A is descendant of B."
+  (unless (and a b (equal (file-truename a) (file-truename b)))
+    (string-prefix-p (replace-regexp-in-string "^\\([A-Za-z]\\):" 'downcase (expand-file-name b) t t)
+                     (replace-regexp-in-string "^\\([A-Za-z]\\):" 'downcase (expand-file-name a) t t))))
+
+(defmacro org-roam-with-file (file keep-buf-p &rest body)
+  "Execute BODY within FILE.
+If FILE is nil, execute BODY in the current buffer.
+Kills the buffer if KEEP-BUF-P is nil, and FILE is not yet visited."
+  (declare (indent 2) (debug t))
+  `(let* (new-buf
+          (auto-mode-alist nil)
+          (find-file-hook nil)
+          (buf (or (and (not ,file)
+                        (current-buffer)) ;If FILE is nil, use current buffer
+                   (find-buffer-visiting ,file) ; If FILE is already visited, find buffer
+                   (progn
+                     (setq new-buf t)
+                     (find-file-noselect ,file)))) ; Else, visit FILE and return buffer
+          res)
+     (with-current-buffer buf
+       (unless (derived-mode-p 'org-mode)
+         (delay-mode-hooks
+           (let ((org-inhibit-startup t)
+                 (org-agenda-files nil))
+             (org-mode)
+             (hack-local-variables))))
+       (setq res (progn ,@body))
+       (unless (and new-buf (not ,keep-buf-p))
+         (save-buffer)))
+     (if (and new-buf (not ,keep-buf-p))
+         (when (find-buffer-visiting ,file)
+           (kill-buffer (find-buffer-visiting ,file))))
+     res))
+
+;;; Buffer utilities
+(defmacro org-roam-with-temp-buffer (file &rest body)
+  "Execute BODY within a temp buffer.
+Like `with-temp-buffer', but propagates `org-roam-directory'.
+If FILE, set `default-directory' to FILE's directory and insert its contents."
+  (declare (indent 1) (debug t))
+  (let ((current-org-roam-directory (make-symbol "current-org-roam-directory")))
+    `(let ((,current-org-roam-directory org-roam-directory))
+       (with-temp-buffer
+         (let ((org-roam-directory ,current-org-roam-directory)
+               (org-inhibit-startup t))
+           (delay-mode-hooks (org-mode))
+           (when ,file
+             (insert-file-contents ,file)
+             (setq-local default-directory (file-name-directory ,file)))
+           ,@body)))))
+
+;;; Formatting
+(defun org-roam-format-template (template replacer)
+  "Format TEMPLATE with the function REPLACER.
+The templates are of form ${foo} for variable foo, and
+${foo=default} for variable foo with default value \"default\".
+REPLACER takes an argument of the format variable and the default
+value (possibly nil). Adapted from `s-format'."
+  (let ((saved-match-data (match-data)))
+    (unwind-protect
+        (replace-regexp-in-string
+         "\\${\\([^}]+\\)}"
+         (lambda (md)
+           (let ((var (match-string 1 md))
+                 (replacer-match-data (match-data))
+                 default-val)
+             (when (string-match "\\(.+\\)=\\(.+\\)" var)
+               (setq default-val (match-string 2 var)
+                     var (match-string 1 var)))
+             (unwind-protect
+                 (let ((v (progn
+                            (set-match-data saved-match-data)
+                            (funcall replacer var default-val))))
+                   (if v
+                       (format (apply #'propertize "%s" (text-properties-at 0 var)) v)
+                     (signal 'org-roam-format-resolve md)))
+               (set-match-data replacer-match-data))))
+         (if (functionp template)
+             (funcall template)
+           template)
+         ;; Need literal to make sure it works
+         t t)
+      (set-match-data saved-match-data))))
+
+;;; Fontification
+(defvar org-ref-buffer-hacked)
+
+(defun org-roam-fontify-like-in-org-mode (s)
+  "Fontify string S like in Org mode.
+Like `org-fontify-like-in-org-mode', but supports `org-ref'."
+  ;; NOTE: pretend that the temporary buffer created by `org-fontify-like-in-org-mode' to
+  ;; fontify a `cite:' reference has been hacked by org-ref, whatever that means;
+  ;;
+  ;; `org-ref-cite-link-face-fn', which is used to supply a face for `cite:' links, calls
+  ;; `hack-dir-local-variables' rationalizing that `bibtex-completion' would throw some warnings
+  ;; otherwise.  This doesn't seem to be the case and calling this function just before
+  ;; `org-font-lock-ensure' (alias of `font-lock-ensure') actually instead of fixing the alleged
+  ;; warnings messes the things so badly that `font-lock-ensure' crashes with error and doesn't let
+  ;; org-roam to proceed further. I don't know what's happening there exactly but disabling this hackery
+  ;; fixes the crashing.  Fortunately, org-ref provides the `org-ref-buffer-hacked' switch, which we use
+  ;; here to make it believe that the buffer was hacked.
+  ;;
+  ;; This is a workaround for `cite:' links and does not have any effect on other ref types.
+  ;;
+  ;; `org-ref-buffer-hacked' is a buffer-local variable, therefore we inline
+  ;; `org-fontify-like-in-org-mode' here
+  (with-temp-buffer
+    (insert s)
+    (let ((org-ref-buffer-hacked t))
+      (org-mode)
+      (setq-local org-fold-core-style 'overlays)
+      (font-lock-ensure)
+      (buffer-string))))
+
+;;; Org-mode utilities
+;;;; Motions
+(defun org-roam-up-heading-or-point-min ()
+  "Fixed version of Org's `org-up-heading-or-point-min'."
+  (ignore-errors (org-back-to-heading t))
+  (let ((p (point)))
+    (if (< 1 (funcall outline-level))
+        (progn
+          (org-up-heading-safe)
+          (when (= (point) p)
+            (goto-char (point-min))))
+      (unless (bobp) (goto-char (point-min))))))
+
+;;;; Keywords
+(defun org-roam-get-keyword (name &optional file bound)
+  "Return keyword property NAME from an org FILE.
+FILE defaults to current file.
+Only scans up to BOUND bytes of the document."
+  (unless bound
+    (setq bound 1024))
+  (if file
+      (with-temp-buffer
+        (insert-file-contents file nil 0 bound)
+        (org-roam--get-keyword name))
+    (org-roam--get-keyword name bound)))
+
+(defun org-roam--get-keyword (name &optional bound)
+  "Return keyword property NAME in current buffer.
+If BOUND, scan up to BOUND bytes of the buffer."
+  (save-excursion
+    (let ((re (format "^#\\+%s:[ \t]*\\([^\n]+\\)" (upcase name))))
+      (goto-char (point-min))
+      (when (re-search-forward re bound t)
+        (buffer-substring-no-properties (match-beginning 1) (match-end 1))))))
+
+(defun org-roam-end-of-meta-data (&optional full)
+  "Like `org-end-of-meta-data', but supports file-level metadata.
+
+When FULL is non-nil but not t, skip planning information,
+properties, clocking lines and logbook drawers.
+
+When optional argument FULL is t, skip everything above, and also
+skip keywords."
+  (org-back-to-heading-or-point-min t)
+  (when (org-at-heading-p) (forward-line))
+  ;; Skip planning information.
+  (when (looking-at-p org-planning-line-re) (forward-line))
+  ;; Skip property drawer.
+  (when (looking-at org-property-drawer-re)
+    (goto-char (match-end 0))
+    (forward-line))
+  ;; When FULL is not nil, skip more.
+  (when (and full (not (org-at-heading-p)))
+    (catch 'exit
+      (let ((end (save-excursion (outline-next-heading) (point)))
+            (re (concat "[ \t]*$" "\\|" org-clock-line-re)))
+        (while (not (eobp))
+          (cond ;; Skip clock lines.
+           ((looking-at-p re) (forward-line))
+           ;; Skip logbook drawer.
+           ((looking-at-p org-logbook-drawer-re)
+            (if (re-search-forward "^[ \t]*:END:[ \t]*$" end t)
+                (forward-line)
+              (throw 'exit t)))
+           ((looking-at-p org-drawer-regexp)
+            (if (re-search-forward "^[ \t]*:END:[ \t]*$" end t)
+                (forward-line)
+              (throw 'exit t)))
+           ;; When FULL is t, skip keywords too.
+           ((and (eq full t)
+                 (looking-at-p org-keyword-regexp))
+            (forward-line))
+           (t (throw 'exit t))))))))
+
+(defun org-roam-set-keyword (key value)
+  "Set keyword KEY to VALUE.
+If the property is already set, it's value is replaced."
+  (org-with-point-at 1
+    (let ((case-fold-search t))
+      (if (re-search-forward (concat "^#\\+" key ":\\(.*\\)") (point-max) t)
+          (if (string-blank-p value)
+              (kill-whole-line)
+            (replace-match (concat " " value) 'fixedcase nil nil 1))
+        (org-roam-end-of-meta-data 'drawers)
+        (if (save-excursion (end-of-line) (eobp))
+            (progn
+              (end-of-line)
+              (insert "\n"))
+          (forward-line)
+          (beginning-of-line))
+        (insert "#+" key ": " value "\n")))))
+
+(defun org-roam-erase-keyword (keyword)
+  "Erase the line where the KEYWORD is, setting line from the top of the file."
+  (let ((case-fold-search t))
+    (org-with-point-at 1
+      (when (re-search-forward (concat "^#\\+" keyword ":") nil t)
+        (beginning-of-line)
+        (delete-region (point) (line-end-position))
+        (delete-char 1)))))
+
+;;;; Properties
+(defun org-roam-add-property (val prop)
+  "Add VAL value to PROP property for the node at point.
+Both, VAL and PROP are strings."
+  (org-roam-property-add prop val))
+
+(defun org-roam-remove-property (prop &optional val)
+  "Remove VAL value from PROP property for the node at point.
+Both VAL and PROP are strings.
+
+If VAL is not specified, user is prompted to select a value."
+  (org-roam-property-remove prop val))
+
+(defun org-roam-property-add (prop val)
+  "Add VAL value to PROP property for the node at point.
+Both, VAL and PROP are strings."
+  (let* ((p (org-entry-get (point) prop))
+         (lst (when p (split-string-and-unquote p)))
+         (lst (if (memq val lst) lst (cons val lst)))
+         (lst (seq-uniq lst)))
+    (org-set-property prop (combine-and-quote-strings lst))
+    val))
+
+(defun org-roam-property-remove (prop &optional val)
+  "Remove VAL value from PROP property for the node at point.
+Both VAL and PROP are strings.
+
+If VAL is not specified, user is prompted to select a value."
+  (let* ((p (org-entry-get (point) prop))
+         (lst (when p (split-string-and-unquote p)))
+         (prop-to-remove (or val (completing-read "Remove: " lst)))
+         (lst (delete prop-to-remove lst)))
+    (if lst
+        (org-set-property prop (combine-and-quote-strings lst))
+      (org-delete-property prop))
+    prop-to-remove))
+
+;;; Refs
+(defun org-roam-org-ref-path-to-keys (path)
+  "Return a list of keys given an org-ref cite: PATH.
+Accounts for both v2 and v3."
+  (cond ((fboundp 'org-ref-parse-cite-path)
+         (mapcar (lambda (cite) (plist-get cite :key))
+                 (plist-get (org-ref-parse-cite-path path) :references)))
+        ((fboundp 'org-ref-split-and-strip-string)
+         (org-ref-split-and-strip-string path))))
+
+;;; Logs
+(defvar org-roam-verbose)
+(defun org-roam-message (format-string &rest args)
+  "Pass FORMAT-STRING and ARGS to `message' when `org-roam-verbose' is t."
+  (when org-roam-verbose
+    (apply #'message `(,(concat "(org-roam) " format-string) ,@args))))
+
+;;; Diagnostics
+;; TODO Update this to also get commit hash
+;;;###autoload
+(defun org-roam-version (&optional message)
+  "Return `org-roam' version.
+Interactively, or when MESSAGE is non-nil, show in the echo area."
+  (interactive)
+  (let* ((toplib (or load-file-name buffer-file-name))
+         gitdir topdir version)
+    (unless (and toplib (equal (file-name-nondirectory toplib) "org-roam-utils.el"))
+      (setq toplib (locate-library "org-roam-utils.el")))
+    (setq toplib (and toplib (org-roam--straight-chase-links toplib)))
+    (when toplib
+      (setq topdir (file-name-directory toplib)
+            gitdir (expand-file-name ".git" topdir)))
+    (when (file-exists-p gitdir)
+      (setq version
+            (let ((default-directory topdir))
+              (shell-command-to-string "git describe --tags --dirty --always"))))
+    (unless version
+      (setq version (with-temp-buffer
+                      (insert-file-contents-literally (locate-library "org-roam.el"))
+                      (goto-char (point-min))
+                      (save-match-data
+                        (if (re-search-forward "\\(?:;; Version: \\([^z-a]*?$\\)\\)" nil nil)
+                            (substring-no-properties (match-string 1))
+                          "N/A")))))
+    (if (or message (called-interactively-p 'interactive))
+        (message "%s" version)
+      version)))
+
+(defun org-roam--straight-chase-links (filename)
+  "Chase links in FILENAME until a name that is not a link.
+
+This is the same as `file-chase-links', except that it also
+handles fake symlinks that are created by the package manager
+straight.el on Windows.
+
+See <https://github.com/raxod502/straight.el/issues/520>."
+  (when (and (bound-and-true-p straight-symlink-emulation-mode)
+             (fboundp 'straight-chase-emulated-symlink))
+    (when-let ((target (straight-chase-emulated-symlink filename)))
+      (unless (eq target 'broken)
+        (setq filename target))))
+  (file-chase-links filename))
+
+;;;###autoload
+(defun org-roam-diagnostics ()
+  "Collect and print info for `org-roam' issues."
+  (interactive)
+  (with-current-buffer (switch-to-buffer-other-window (get-buffer-create "*org-roam diagnostics*"))
+    (erase-buffer)
+    (insert (propertize "Copy info below this line into issue:\n" 'face '(:weight bold)))
+    (insert (format "- Emacs: %s\n" (emacs-version)))
+    (insert (format "- Framework: %s\n"
+                    (condition-case _
+                        (completing-read "I'm using the following Emacs framework:"
+                                         '("Doom" "Spacemacs" "N/A" "I don't know"))
+                      (quit "N/A"))))
+    (insert (format "- Org: %s\n" (org-version nil 'full)))
+    (insert (format "- Org-roam: %s" (org-roam-version)))
+    (insert (format "- sqlite-connector: %s"
+                    (if-let ((conn (org-roam-db--get-connection)))
+                        (eieio-object-class conn)
+                      "not connected")))))
+
+(provide 'org-roam-utils)
+;;; org-roam-utils.el ends here

tests/roam-files/alias.org

@@ -1,2 +0,0 @@
-#+ROAM_ALIAS: "a1" "a 2"
-#+TITLE: t1

tests/roam-files/bar.org

@@ -1,3 +1,6 @@
-#+TITLE: Bar
+:PROPERTIES:
+:ID:       440795d0-70c1-4165-993d-aebd5eef7a24
+:END:
+#+title: Bar
 
-This is file bar. Bar links to [[file:nested/bar.org][Nested Bar]].
+[[id:884b2341-b7fe-434d-848c-5282c0727861][Foo]]

tests/roam-files/base.org

@@ -1 +0,0 @@
-#+TITLE: Base

tests/roam-files/demoteable.org

@@ -0,0 +1,8 @@
+:PROPERTIES:
+:ID: 97bf31cf-dfee-45d8-87a5-2ae0dabc4734
+:END:
+#+title: Demoteable
+
+* Demoteable h1
+
+** Demoteable child

tests/roam-files/family.org

@@ -0,0 +1,19 @@
+:PROPERTIES:
+:ID: 998b2341-b7fe-434d-848c-5282c0727870
+:END:
+#+title: Family
+
+* Grand-Parent
+:PROPERTIES:
+:ID: 77a90980-1994-464e-901f-7e3d3df07fd3
+:END:
+
+** Parent
+:PROPERTIES:
+:ID: 0fa5bb3e-3d8c-4966-8bc9-78d32e505d69
+:END:
+
+*** Child
+:PROPERTIES:
+:ID: 5fb4fdc5-b6d2-4f75-8d54-e60053e467ec
+:END:

tests/roam-files/foo.org

@@ -1,8 +1,4 @@
-#+TITLE: Foo
-
-This is the foo file. It contains a link to [[file:bar.org][Bar]].
-
-To make the tests more robust, here are some arbitrary links:
-
-- [[https:google.com][Google]]
-- [[mailto:foo@john.com][mail to foo]]
+:PROPERTIES:
+:ID:       884b2341-b7fe-434d-848c-5282c0727861
+:END:
+#+title: Foo

tests/roam-files/nested/bar.org

@@ -1,3 +0,0 @@
-#+TITLE: Nested Bar
-
-This file is nested, 1 level deeper. It links to both [[file:../foo.org][Foo]] and [[file:foo.org][Nested Foo]].

tests/roam-files/nested/deeply/deeply_nested_file.org

@@ -1 +0,0 @@
-#+TITLE: Deeply Nested File

tests/roam-files/nested/foo.org

@@ -1,3 +0,0 @@
-#+TITLE: Nested Foo
-
-This file has no links.

tests/roam-files/no-title.org

@@ -1,5 +0,0 @@
-no title in this file :O
-
-links to itself, with no title: [[file:no-title.org][no-title]]
-
-* Headline title

tests/roam-files/promoteable.org

@@ -0,0 +1,3 @@
+* Promoteable h1
+
+** Promoteable child

tests/roam-files/ref_with_space.org

@@ -0,0 +1,7 @@
+:PROPERTIES:
+:ROAM_REFS: "http://site.net/docs/01. introduction - hello world.html"
+:ID: 5b9a7400-f59c-4ef9-acbb-045b69af98f1
+:END:
+#+title: ref with space
+* Note
+hello

tests/roam-files/roam-exclude.org

@@ -0,0 +1,7 @@
+:PROPERTIES:
+:ID:       53fadc75-f48e-461e-be06-44a1e88b2abe
+:ROAM_EXCLUDE: t
+:END:
+#+TITLE: Excluded by Org-roam
+
+This node is excluded by declaring ~ROAM_EXCLUDE: t~.

tests/roam-files/tags/no_tag.org

@@ -1,3 +0,0 @@
-#+TITLE: Tagless File
-
-This file has no tags, and should not yield any tags on extracting via =#+ROAM_TAGS=.

tests/roam-files/tags/tag.org

@@ -1,4 +0,0 @@
-#+ROAM_TAGS: "t1" "t2 with space" t3
-#+TITLE: Tags
-
-This file is used to test functionality for =(org-roam--extract-tags)=

tests/roam-files/titles/aliases.org

@@ -1 +0,0 @@
-#+ROAM_ALIAS: "roam" "alias"

tests/roam-files/titles/combination.org

@@ -1,4 +0,0 @@
-#+TITLE: TITLE PROP
-#+ROAM_ALIAS: "roam" "alias"
-
-* Headline

tests/roam-files/titles/headline.org

@@ -1 +0,0 @@
-* Headline

tests/roam-files/titles/title.org

@@ -1 +0,0 @@
-#+TITLE: Title

tests/roam-files/unlinked.org

@@ -1,3 +0,0 @@
-#+TITLE: Unlinked
-
-Nothing links here :(

tests/roam-files/web_ref.org

@@ -1 +0,0 @@
-#+ROAM_KEY: https://google.com/

tests/roam-files/with-alias.org

@@ -0,0 +1,5 @@
+:PROPERTIES:
+:ID: 57ff3ce7-5bda-4825-8fca-c09f523e87ba
+:ROAM_ALIASES: Batman
+:END:
+#+title: Bruce Wayne

tests/roam-files/with-times.org

@@ -0,0 +1,16 @@
+:PROPERTIES:
+:ID: 9a20ca6c-5555-41c9-a039-ac38bf59c7a9
+:END:
+#+title: With Times
+
+* Scheduled heading
+SCHEDULED: <2024-07-16 Tue>
+:PROPERTIES:
+:ID: a523c198-4cb4-44d2-909c-a0e3258089cd
+:END:
+
+* Deadline heading
+DEADLINE: <2024-07-17 Tue>
+:PROPERTIES:
+:ID: 3ab84701-d1c1-463f-b5c6-715e6ff5a0bf
+:END:

tests/test-org-roam-capture.el

@@ -0,0 +1,63 @@
+;;; test-org-roam-capture.el --- Tests for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright (C) 2020 Jethro Kuan
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; Package-Requires: ((buttercup))
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+;;; Commentary:
+;;; Code:
+
+(require 'buttercup)
+(require 'org-roam)
+
+(describe "org-roam-capture--fill-template"
+  (it "fills template without newline"
+    (expect
+     (org-roam-capture--fill-template "foo")
+     :to-equal "foo"))
+
+  (it "fills template ensuring newline"
+    (expect
+     (org-roam-capture--fill-template "foo" 'ensure-newline)
+     :to-equal "foo\n"))
+
+  (it "fills template with newline"
+    (expect
+     (org-roam-capture--fill-template "foo\n")
+     :to-equal "foo\n"))
+
+  (it "fills template with two newlines"
+    (expect
+     (org-roam-capture--fill-template "foo\n\n")
+     :to-equal "foo\n\n")
+    (expect
+     (org-roam-capture--fill-template "foo\n\t\n")
+     :to-equal "foo\n\t\n"))
+
+  (it "fills template without deleting newlines in its body"
+    (expect
+     (org-roam-capture--fill-template "foo\n\n\nbar\n\n")
+     :to-equal "foo\n\n\nbar\n\n"))
+
+  (it "expands templates when it's a function"
+    (expect
+     (org-roam-capture--fill-template (lambda () "foo"))
+     :to-equal "foo")))
+
+(provide 'test-org-roam-capture)
+
+;;; test-org-roam-capture.el ends here

tests/test-org-roam-db.el

@@ -0,0 +1,120 @@
+;;; test-org-roam-db.el --- Tests for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright (C) 2020 Jethro Kuan
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; Package-Requires: ((buttercup))
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+;;; Commentary:
+;;; Code:
+
+(require 'buttercup)
+(require 'org-roam)
+
+(defvar root-directory default-directory)
+
+(describe "org-roam-db-get-scheduled-time"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location)
+    (cd root-directory))
+
+  (it "should get scheduled time for current heading node"
+    (org-roam-id-open "a523c198-4cb4-44d2-909c-a0e3258089cd" nil)
+    (expect (org-roam-db-get-scheduled-time) :to-equal "2024-07-16T00:00:00")))
+
+(describe "org-roam-db-get-deadline-time"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location)
+    (cd root-directory))
+
+  (it "should get deadline time for current heading node"
+    (org-roam-id-open "3ab84701-d1c1-463f-b5c6-715e6ff5a0bf" nil)
+    (expect (org-roam-db-get-deadline-time) :to-equal "2024-07-17T00:00:00")))
+
+(describe "org-roam-db--file-hash"
+  (it "computes the SHA1 of file"
+    (expect (org-roam-db--file-hash "tests/roam-files/family.org")
+            :to-equal
+            "c4ebf8918c1533df72e4d182cbf1bbd90f776b3b")))
+
+(describe "org-roam-db-sync"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location))
+
+  (it "has the correct number of files"
+    (expect (caar (org-roam-db-query [:select (funcall count) :from files]))
+            :to-equal
+            9))
+
+  (it "has the correct number of nodes"
+    (expect (caar (org-roam-db-query [:select (funcall count) :from nodes]))
+            :to-equal
+            12))
+
+  (it "has the correct number of links"
+    (expect (caar (org-roam-db-query [:select (funcall count) :from links]))
+            :to-equal
+            1))
+
+  (it "respects ROAM_EXCLUDE"
+    ;; The excluded node has ID "53fadc75-f48e-461e-be06-44a1e88b2abe"
+    (expect (mapcar #'car (org-roam-db-query [:select id :from nodes]))
+            :to-have-same-items-as
+            '("884b2341-b7fe-434d-848c-5282c0727861"
+              "440795d0-70c1-4165-993d-aebd5eef7a24"
+              "5b9a7400-f59c-4ef9-acbb-045b69af98f1"
+              "0fa5bb3e-3d8c-4966-8bc9-78d32e505d69"
+              "5fb4fdc5-b6d2-4f75-8d54-e60053e467ec"
+              "77a90980-1994-464e-901f-7e3d3df07fd3"
+              "57ff3ce7-5bda-4825-8fca-c09f523e87ba"
+              "998b2341-b7fe-434d-848c-5282c0727870"
+              "a523c198-4cb4-44d2-909c-a0e3258089cd"
+              "3ab84701-d1c1-463f-b5c6-715e6ff5a0bf"
+              "9a20ca6c-5555-41c9-a039-ac38bf59c7a9"
+              "97bf31cf-dfee-45d8-87a5-2ae0dabc4734")))
+
+  (it "reads ref in quotes correctly"
+    (expect (mapcar #'car (org-roam-db-query [:select [ref] :from refs]))
+            :to-have-same-items-as
+            '("//site.net/docs/01. introduction - hello world.html"))))
+
+(provide 'test-org-roam-db)
+
+;;; test-org-roam-db.el ends here

tests/test-org-roam-id.el

@@ -0,0 +1,79 @@
+;;; test-org-roam-id.el --- Tests for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright (C) 2020 Jethro Kuan
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; Package-Requires: ((buttercup))
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+;;; Commentary:
+;;; Code:
+
+(require 'buttercup)
+(require 'org-roam)
+
+(defvar root-directory default-directory)
+
+(describe "org-roam-id-at-point"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location)
+    (cd root-directory))
+
+  (it "returns the correct node ids"
+    (find-file "tests/roam-files/family.org" nil)
+    (expect (org-roam-id-at-point) :to-equal "998b2341-b7fe-434d-848c-5282c0727870")
+
+    (search-forward "Grand")
+    (expect (org-roam-id-at-point) :to-equal "77a90980-1994-464e-901f-7e3d3df07fd3")
+
+    (search-forward "Child")
+    (expect (org-roam-id-at-point) :to-equal "5fb4fdc5-b6d2-4f75-8d54-e60053e467ec")))
+
+(describe "org-roam-id-find"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location))
+
+  (it "finds nothing for non-existing node"
+    (expect (org-roam-id-find "non-existing") :to-equal nil))
+
+  (it "finds the correct file node"
+    (let ((location (org-roam-id-find "884b2341-b7fe-434d-848c-5282c0727861")))
+      (expect (car location) :to-match ".*/tests/roam-files/foo.org")
+      (expect (cdr location) :to-equal 1)))
+
+  (it "finds the correct heading node"
+    (let ((location (org-roam-id-find "0fa5bb3e-3d8c-4966-8bc9-78d32e505d69")))
+      (expect (car location) :to-match ".*/tests/roam-files/family.org")
+      (expect (cdr location) :to-equal 156))))
+
+(provide 'test-org-roam-id)
+
+;;; test-org-roam-id.el ends here

tests/test-org-roam-mode.el

@@ -0,0 +1,39 @@
+;;; test-org-roam-mode.el --- Tests for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright (C) 2020 Jethro Kuan
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; Package-Requires: ((buttercup))
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+;;; Commentary:
+;;; Code:
+
+(require 'buttercup)
+(require 'org-roam)
+
+(describe "org-roam-unlinked-references--rg-command"
+  (before-each
+    ;; the space in the directory is on purpose
+    (setq org-roam-directory "/tmp/org roam"))
+
+  (it "returns the correct rg command for unlinked references"
+    (expect (org-roam-unlinked-references--rg-command '("foo" "bar") "/tmp/regex")
+            :to-equal
+            "rg --follow --only-matching --vimgrep --pcre2 --ignore-case --glob \"*.org\" --glob \"*.org.gpg\" --glob \"*.org.age\" --file /tmp/regex /tmp/org\\ roam")))
+
+(provide 'test-org-roam-mode)
+
+;;; test-org-roam-mode.el ends here

tests/test-org-roam-node.el

@@ -0,0 +1,164 @@
+;;; test-org-roam-node.el --- Tests for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright (C) 2020 Jethro Kuan
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; Package-Requires: ((buttercup))
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+;;; Commentary:
+;;; Code:
+
+(require 'buttercup)
+(require 'org-roam)
+
+(defvar root-directory default-directory)
+
+(describe "org-roam-node-from-id"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location))
+
+  (it "returns nil for unknown id"
+    (expect (org-roam-node-from-id "non-existing") :to-equal nil))
+
+  (it "returns correct node from id"
+    (let ((node (org-roam-node-from-id "884b2341-b7fe-434d-848c-5282c0727861")))
+      (expect (org-roam-node-title node) :to-equal "Foo"))))
+
+(describe "org-roam-node-from-title-or-alias"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location))
+
+  (it "returns nil for unknown title"
+    (expect (org-roam-node-from-title-or-alias "non-existing") :to-equal nil))
+
+  (it "returns correct node from title"
+    (let ((node (org-roam-node-from-title-or-alias "Foo")))
+      (expect (org-roam-node-title node) :to-equal "Foo")))
+
+  (it "returns correct node from alias"
+    (let ((node (org-roam-node-from-title-or-alias "Batman")))
+      (expect (org-roam-node-title node) :to-equal "Bruce Wayne")))
+
+  (it "returns correct node from alias with nocase"
+    (let ((node (org-roam-node-from-title-or-alias "batman" t)))
+      (expect (org-roam-node-title node) :to-equal "Bruce Wayne"))))
+
+(describe "org-roam-demote-entire-buffer"
+  (after-each
+    (cd root-directory))
+
+  (it "demotes an entire org buffer"
+    (find-file "tests/roam-files/demoteable.org" nil)
+    (org-roam-demote-entire-buffer)
+    (expect (buffer-substring-no-properties (point) (point-max))
+            :to-equal "* Demoteable\n:PROPERTIES:\n:ID: 97bf31cf-dfee-45d8-87a5-2ae0dabc4734\n:END:\n\n** Demoteable h1\n\n*** Demoteable child\n")))
+
+(describe "org-roam--h1-count"
+  (after-each
+    (cd root-directory))
+
+  (it "returns the correct number of level-1 headings"
+    (find-file "tests/roam-files/foo.org" nil)
+    (expect (org-roam--h1-count) :to-equal 0)
+
+    (cd root-directory)
+
+    (find-file "tests/roam-files/family.org" nil)
+    (expect (org-roam--h1-count) :to-equal 1)))
+
+(describe "org-roam--buffer-promoteable-p"
+  (after-each
+    (cd root-directory))
+
+  (it "should check if buffer is promoteable"
+    (find-file "tests/roam-files/foo.org" nil)
+    (expect (org-roam--buffer-promoteable-p) :to-equal nil)
+
+    (cd root-directory)
+
+    (find-file "tests/roam-files/family.org" nil)
+    (expect (org-roam--buffer-promoteable-p) :to-equal nil)
+
+    (cd root-directory)
+
+    (find-file "tests/roam-files/promoteable.org" nil)
+    (expect (org-roam--buffer-promoteable-p) :to-equal t)))
+
+(describe "org-roam--get-titles"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location))
+
+  (it "returns the list of titles and aliases"
+    (expect (org-roam--get-titles)
+            :to-have-same-items-as
+            `("Bar" "Batman" "Bruce Wayne" "Child" "Deadline heading" "Demoteable" "Family"
+              "Foo" "Grand-Parent" "Parent" "ref with space" "Scheduled heading" "With Times"))))
+
+
+(describe "org-roam-alias"
+  (before-all
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil)
+    (org-roam-db-sync))
+
+  (after-all
+    (org-roam-db--close)
+    (delete-file org-roam-db-location)
+    (cd root-directory))
+
+  (it "adds an alias to a node"
+    (cd root-directory)
+    (find-file "tests/roam-files/foo.org" nil)
+    (org-roam-alias-add "qux")
+    (expect (buffer-substring-no-properties (point) (point-max))
+            :to-equal ":PROPERTIES:\n:ID:       884b2341-b7fe-434d-848c-5282c0727861\n:ROAM_ALIASES: qux\n:END:\n#+title: Foo\n"))
+
+  (it "removes an alias from a node"
+    (cd root-directory)
+    (find-file "tests/roam-files/with-alias.org" nil)
+    (org-roam-alias-remove "Batman")
+    (expect (buffer-substring-no-properties (point) (point-max))
+            :to-equal ":PROPERTIES:\n:ID: 57ff3ce7-5bda-4825-8fca-c09f523e87ba\n:END:\n#+title: Bruce Wayne\n")))
+
+(provide 'test-org-roam-node)
+
+;;; test-org-roam-node.el ends here

tests/test-org-roam-utils.el

@@ -0,0 +1,64 @@
+;;; test-org-roam-utils.el --- Tests for Org-roam -*- lexical-binding: t; -*-
+
+;; Copyright (C) 2020 Jethro Kuan
+
+;; Author: Jethro Kuan <jethrokuan95@gmail.com>
+;; Package-Requires: ((buttercup))
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+;;; Commentary:
+;;; Code:
+
+(require 'buttercup)
+(require 'org-roam)
+
+(describe "org-roam-whitespace-content"
+  (it "extracts whitespace correctly"
+    (expect
+     (org-roam-whitespace-content "foo")
+     :to-equal "")
+    (expect
+     (org-roam-whitespace-content "foo\n")
+     :to-equal "\n")
+    (expect
+     (org-roam-whitespace-content "foo\n\t\n")
+     :to-equal "\n\t\n")))
+
+(describe "org-roam-db--file-title"
+  (it "supports normal titles"
+    (expect
+     (with-temp-buffer
+       (insert "#+title:normal title")
+       (org-roam-db--file-title))
+     :to-equal "normal title"))
+  (it "supports multi-line titles"
+    (expect
+     (with-temp-buffer
+       (insert "#+title: title:\n#+title: separated by newline")
+       (org-roam-db--file-title))
+     :to-equal "title: separated by newline"))
+  (it "supports file-name based titles"
+    (progn
+      (setq org-roam-directory temporary-file-directory
+            org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+            org-roam-file-extensions '("org"))
+      (with-temp-buffer
+        (write-file (expand-file-name "test file.org" org-roam-directory))
+        (org-roam-db--file-title)))
+    :to-equal "test file"))
+
+(provide 'test-org-roam-utils)
+
+;;; test-org-roam-utils.el ends here

tests/test-org-roam.el

@@ -3,7 +3,7 @@
 ;; Copyright (C) 2020 Jethro Kuan
 
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
-;; Package-Requires: ((buttercup) (with-simulated-input))
+;; Package-Requires: ((buttercup))
 
 ;; This program is free software; you can redistribute it and/or modify
 ;; it under the terms of the GNU General Public License as published by
@@ -22,446 +22,60 @@
 ;;; Code:
 
 (require 'buttercup)
-(require 'with-simulated-input)
 (require 'org-roam)
-(require 'dash)
 
-(defun test-org-roam--abs-path (file-path)
-  "Get absolute FILE-PATH from `org-roam-directory'."
-  (file-truename (expand-file-name file-path org-roam-directory)))
+(defvar root-directory default-directory)
 
-(defun test-org-roam--find-file (path)
-  "PATH."
-  (let ((path (test-org-roam--abs-path path)))
-    (make-directory (file-name-directory path) t)
-    (find-file path)))
+(describe "org-roam-file-p"
+  (it "checks if given file respects criteria"
+    (setq org-roam-directory "/non-existent")
+    (expect (org-roam-file-p "tests/roam-files/family.org") :to-equal nil)
 
-(defvar test-org-roam-directory (file-truename (concat default-directory "tests/roam-files"))
-  "Directory containing org-roam test org files.")
+    (setq org-roam-directory (expand-file-name "tests/roam-files"))
+    (expect (org-roam-file-p "tests/roam-files/family.org") :to-equal t)
+    (expect (org-roam-file-p "tests/roam-files/markdown.md") :to-equal nil)
 
-(defun test-org-roam--init ()
-  "."
-  (let ((original-dir test-org-roam-directory)
-        (new-dir (expand-file-name (make-temp-name "org-roam") temporary-file-directory)))
-    (copy-directory original-dir new-dir)
-    (setq org-roam-directory new-dir)
-    (org-roam-mode +1)
-    (sleep-for 2)))
+    (setq org-roam-file-exclude-regexp (regexp-quote "family.org"))
+    (expect (org-roam-file-p "tests/roam-files/family.org") :to-equal nil)))
 
-(defun test-org-roam--teardown ()
-  (org-roam-mode -1)
-  (delete-file (org-roam-db--get))
-  (org-roam-db--close))
+(describe "org-roam-buffer-p"
+  (it "checks if current buffer respects criteria"
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-file-exclude-regexp nil)
+    (find-file "tests/roam-files/family.org" nil)
+    (expect (org-roam-buffer-p) :to-equal t)
+    (cd root-directory)))
 
-(describe "Title extraction"
-  :var (org-roam-title-sources)
-  (before-all
-    (test-org-roam--init))
+(describe "org-roam-list-files"
+  (before-each
+    (setq org-roam-directory (expand-file-name "tests/roam-files")
+          org-roam-db-location (expand-file-name "org-roam.db" temporary-file-directory)
+          org-roam-file-extensions '("org")
+          org-roam-file-exclude-regexp nil))
 
   (after-all
-    (test-org-roam--teardown))
+    (org-roam-db--close)
+    (delete-file org-roam-db-location))
 
-  (cl-flet
-      ((test (fn file)
-             (let ((buf (find-file-noselect
-                         (test-org-roam--abs-path file))))
-               (with-current-buffer buf
-                 (funcall fn)))))
-    (it "extracts title from title property"
-      (expect (test #'org-roam--extract-titles-title
-                    "titles/title.org")
-              :to-equal
-              '("Title"))
-      (expect (test #'org-roam--extract-titles-title
-                    "titles/aliases.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-titles-title
-                    "titles/headline.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-titles-title
-                    "titles/combination.org")
-              :to-equal
-              '("TITLE PROP")))
+  (it "gets files correctly"
+    (expect (length (org-roam-list-files)) :to-equal 9))
 
-    (it "extracts alias"
-      (expect (test #'org-roam--extract-titles-alias
-                    "titles/title.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-titles-alias
-                    "titles/aliases.org")
-              :to-equal
-              '("roam" "alias"))
-      (expect (test #'org-roam--extract-titles-alias
-                    "titles/headline.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-titles-alias
-                    "titles/combination.org")
-              :to-equal
-              '("roam" "alias")))
+  (it "respects org-roam-file-extensions"
+    (setq org-roam-file-extensions '("md"))
+    (expect (length (org-roam-list-files)) :to-equal 1)
+    (setq org-roam-file-extensions '("org" "md"))
+    (expect (length (org-roam-list-files)) :to-equal 10))
 
-    (it "extracts headlines"
-      (expect (test #'org-roam--extract-titles-alias
-                    "titles/title.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-titles-headline
-                    "titles/aliases.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-titles-headline
-                    "titles/headline.org")
-              :to-equal
-              '("Headline"))
-      (expect (test #'org-roam--extract-titles-headline
-                    "titles/combination.org")
-              :to-equal
-              '("Headline")))
+  (it "respects org-roam-file-exclude-regexp"
+    (setq org-roam-file-exclude-regexp (regexp-quote "foo.org"))
+    (expect (length (org-roam-list-files)) :to-equal 8)))
 
-    (describe "uses org-roam-title-sources correctly"
-      (it "'((title headline) alias)"
-        (expect (let ((org-roam-title-sources '((title headline) alias)))
-                  (test #'org-roam--extract-titles
-                        "titles/combination.org"))
-                :to-equal
-                '("TITLE PROP" "roam" "alias")))
-      (it "'((headline title) alias)"
-        (expect (let ((org-roam-title-sources '((headline title) alias)))
-                  (test #'org-roam--extract-titles
-                        "titles/combination.org"))
-                :to-equal
-                '("Headline" "roam" "alias")))
-      (it "'(headline alias title)"
-        (expect (let ((org-roam-title-sources '(headline alias title)))
-                  (test #'org-roam--extract-titles
-                        "titles/combination.org"))
-                :to-equal
-                '("Headline" "roam" "alias" "TITLE PROP"))))))
+(describe "org-roam--list-files-search-globs"
 
-(describe "Tag extraction"
-  :var (org-roam-tag-sources)
-  (before-all
-    (test-org-roam--init))
-
-  (after-all
-    (test-org-roam--teardown))
-
-  (cl-flet
-      ((test (fn file)
-             (let* ((fname (test-org-roam--abs-path file))
-                    (buf (find-file-noselect fname)))
-               (with-current-buffer buf
-                 (funcall fn fname)))))
-    (it "extracts from prop"
-      (expect (test #'org-roam--extract-tags-prop
-                    "tags/tag.org")
-              :to-equal
-              '("t1" "t2 with space" "t3"))
-      (expect (test #'org-roam--extract-tags-prop
-                    "tags/no_tag.org")
-              :to-equal
-              nil))
-
-    (it "extracts from all directories"
-      (expect (test #'org-roam--extract-tags-all-directories
-                    "base.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-tags-all-directories
-                    "tags/tag.org")
-              :to-equal
-              '("tags"))
-      (expect (test #'org-roam--extract-tags-all-directories
-                    "nested/deeply/deeply_nested_file.org")
-              :to-equal
-              '("nested" "deeply")))
-
-    (it "extracts from last directory"
-      (expect (test #'org-roam--extract-tags-last-directory
-                    "base.org")
-              :to-equal
-              nil)
-      (expect (test #'org-roam--extract-tags-last-directory
-                    "tags/tag.org")
-              :to-equal
-              '("tags"))
-      (expect (test #'org-roam--extract-tags-last-directory
-                    "nested/deeply/deeply_nested_file.org")
-              :to-equal
-              '("deeply")))
-
-    (describe "uses org-roam-tag-sources correctly"
-      (it "'(prop)"
-        (expect (let ((org-roam-tag-sources '(prop)))
-                  (test #'org-roam--extract-tags
-                        "tags/tag.org"))
-                :to-equal
-                '("t1" "t2 with space" "t3")))
-      (it "'(prop all-directories)"
-        (expect (let ((org-roam-tag-sources '(prop all-directories)))
-                  (test #'org-roam--extract-tags
-                        "tags/tag.org"))
-                :to-equal
-                '("t1" "t2 with space" "t3" "tags"))))))
-
-;;; Tests
-(xdescribe "org-roam-db-build-cache"
-  (before-each
-    (test-org-roam--init))
-
-  (after-each
-    (test-org-roam--teardown))
-
-  (it "initializes correctly"
-    ;; Cache
-    (expect (caar (org-roam-db-query [:select (funcall count) :from files])) :to-be 8)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from links])) :to-be 5)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from titles])) :to-be 8)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from titles
-                                      :where titles :is-null])) :to-be 1)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from refs])) :to-be 1)
-
-    ;; Links
-    (expect (caar (org-roam-db-query [:select (funcall count) :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 1)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "nested/bar.org"))) :to-be 2)
-
-    ;; Links -- File-to
-    (expect (caar (org-roam-db-query [:select (funcall count) :from links
-                                      :where (= to $s1)]
-                                     (test-org-roam--abs-path "nested/foo.org"))) :to-be 1)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from links
-                                      :where (= to $s1)]
-                                     (test-org-roam--abs-path "nested/bar.org"))) :to-be 1)
-    (expect (caar (org-roam-db-query [:select (funcall count) :from links
-                                      :where (= to $s1)]
-                                     (test-org-roam--abs-path "unlinked.org"))) :to-be 0)
-    ;; TODO Test titles
-    (expect (org-roam-db-query [:select * :from titles])
+  (it "returns the correct list of globs"
+    (expect (org-roam--list-files-search-globs org-roam-file-extensions)
             :to-have-same-items-as
-            (list (list (test-org-roam--abs-path "alias.org")
-                        (list "t1" "a1" "a 2"))
-                  (list (test-org-roam--abs-path "bar.org")
-                        (list "Bar"))
-                  (list (test-org-roam--abs-path "foo.org")
-                        (list "Foo"))
-                  (list (test-org-roam--abs-path "nested/bar.org")
-                        (list "Nested Bar"))
-                  (list (test-org-roam--abs-path "nested/foo.org")
-                        (list "Nested Foo"))
-                  (list (test-org-roam--abs-path "no-title.org")
-                        (list "Headline title"))
-                  (list (test-org-roam--abs-path "web_ref.org") nil)
-                  (list (test-org-roam--abs-path "unlinked.org")
-                        (list "Unlinked"))))
-
-    (expect (org-roam-db-query [:select * :from refs])
-            :to-have-same-items-as
-            (list (list "https://google.com/" (test-org-roam--abs-path "web_ref.org") "website")))
-
-    ;; Expect rebuilds to be really quick (nothing changed)
-    (expect (org-roam-db-build-cache)
-            :to-equal
-            (list :files 0 :links 0 :tags 0 :titles 0 :refs 0 :deleted 0))))
-
-(xdescribe "org-roam-insert"
-  (before-each
-    (test-org-roam--init))
-
-  (after-each
-    (test-org-roam--teardown))
-
-  (it "temp1 -> foo"
-    (let ((buf (test-org-roam--find-file "temp1.org")))
-      (with-current-buffer buf
-        (with-simulated-input
-         "Foo RET"
-         (org-roam-insert))))
-    (expect (buffer-string) :to-match (regexp-quote "file:foo.org")))
-
-  (it "temp2 -> nested/foo"
-    (let ((buf (test-org-roam--find-file "temp2.org")))
-      (with-current-buffer buf
-        (with-simulated-input
-         "(nested) SPC Nested SPC Foo RET"
-         (org-roam-insert))))
-    (expect (buffer-string) :to-match (regexp-quote "file:nested/foo.org")))
-
-  (it "nested/temp3 -> foo"
-    (let ((buf (test-org-roam--find-file "nested/temp3.org")))
-      (with-current-buffer buf
-        (with-simulated-input
-         "Foo RET"
-         (org-roam-insert))))
-    (expect (buffer-string) :to-match (regexp-quote "file:../foo.org")))
-
-  (it "a/b/temp4 -> nested/foo"
-    (let ((buf (test-org-roam--find-file "a/b/temp4.org")))
-      (with-current-buffer buf
-        (with-simulated-input
-         "(nested) SPC Nested SPC Foo RET"
-         (org-roam-insert))))
-    (expect (buffer-string) :to-match (regexp-quote "file:../../nested/foo.org"))))
-
-(xdescribe "rename file updates cache"
-  (before-each
-    (test-org-roam--init))
-
-  (after-each
-    (test-org-roam--teardown))
-
-  (it "foo -> new_foo"
-    (rename-file (test-org-roam--abs-path "foo.org")
-                 (test-org-roam--abs-path "new_foo.org"))
-    ;; Cache should be cleared of old file
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from titles
-                                      :where (= file $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from refs
-                                      :where (= file $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-
-    ;; Cache should be updated
-    (expect (org-roam-db-query [:select [to]
-                                :from links
-                                :where (= from $s1)]
-                               (test-org-roam--abs-path "new_foo.org"))
-            :to-have-same-items-as
-            (list (list (test-org-roam--abs-path "bar.org"))))
-    (expect (org-roam-db-query [:select [from]
-                                :from links
-                                :where (= to $s1)]
-                               (test-org-roam--abs-path "new_foo.org"))
-            :to-have-same-items-as
-            (list (list (test-org-roam--abs-path "nested/bar.org"))))
-
-    ;; Links are updated
-    (expect (with-temp-buffer
-              (insert-file-contents (test-org-roam--abs-path "nested/bar.org"))
-              (buffer-string))
-            :to-match
-            (regexp-quote "[[file:../new_foo.org][Foo]]")))
-
-  (it "foo -> foo with spaces"
-    (rename-file (test-org-roam--abs-path "foo.org")
-                 (test-org-roam--abs-path "foo with spaces.org"))
-    ;; Cache should be cleared of old file
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from titles
-                                      :where (= file $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from refs
-                                      :where (= file $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-
-    ;; Cache should be updated
-    (expect (org-roam-db-query [:select [to]
-                                :from links
-                                :where (= from $s1)]
-                               (test-org-roam--abs-path "foo with spaces.org"))
-            :to-have-same-items-as
-            (list (list (test-org-roam--abs-path "bar.org"))))
-    (expect (org-roam-db-query [:select [from]
-                                :from links
-                                :where (= to $s1)]
-                               (test-org-roam--abs-path "foo with spaces.org"))
-            :to-have-same-items-as
-            (list (list (test-org-roam--abs-path "nested/bar.org"))))
-
-    ;; Links are updated
-    (expect (with-temp-buffer
-              (insert-file-contents (test-org-roam--abs-path "nested/bar.org"))
-              (buffer-string))
-            :to-match
-            (regexp-quote "[[file:../foo with spaces.org][Foo]]")))
-
-  (it "no-title -> meaningful-title"
-    (rename-file (test-org-roam--abs-path "no-title.org")
-                 (test-org-roam--abs-path "meaningful-title.org"))
-    ;; File has no forward links
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "no-title.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "meaningful-title.org"))) :to-be 1)
-
-    ;; Links are updated with the appropriate name
-    (expect (with-temp-buffer
-              (insert-file-contents (test-org-roam--abs-path "meaningful-title.org"))
-              (buffer-string))
-            :to-match
-            (regexp-quote "[[file:meaningful-title.org][meaningful-title]]")))
-
-  (it "web_ref -> hello"
-    (expect (org-roam-db-query
-             [:select [file] :from refs
-              :where (= ref $s1)]
-             "https://google.com/")
-            :to-equal
-            (list (list (test-org-roam--abs-path "web_ref.org"))))
-    (rename-file (test-org-roam--abs-path "web_ref.org")
-                 (test-org-roam--abs-path "hello.org"))
-    (expect (org-roam-db-query
-             [:select [file] :from refs
-              :where (= ref $s1)]
-             "https://google.com/")
-            :to-equal (list (list (test-org-roam--abs-path "hello.org"))))
-    (expect (caar (org-roam-db-query
-                   [:select [ref] :from refs
-                    :where (= file $s1)]
-                   (test-org-roam--abs-path "web_ref.org")))
-            :to-equal nil)))
-
-(xdescribe "delete file updates cache"
-  (before-each
-    (test-org-roam--init))
-
-  (after-each
-    (test-org-roam--teardown))
-
-  (it "delete foo"
-    (delete-file (test-org-roam--abs-path "foo.org"))
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from titles
-                                      :where (= file $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from refs
-                                      :where (= file $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0)
-    (expect (caar (org-roam-db-query [:select (funcall count)
-                                      :from links
-                                      :where (= from $s1)]
-                                     (test-org-roam--abs-path "foo.org"))) :to-be 0))
-
-  (it "delete web_ref"
-    (expect (org-roam-db-query [:select * :from refs])
-            :to-have-same-items-as
-            (list (list "https://google.com/" (test-org-roam--abs-path "web_ref.org") "website")))
-    (delete-file (test-org-roam--abs-path "web_ref.org"))
-    (expect (org-roam-db-query [:select * :from refs])
-            :to-have-same-items-as
-            (list))))
+            '("\"*.org\"" "\"*.org.gpg\"" "\"*.org.age\""))))
 
 (provide 'test-org-roam)