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<div class="top-level-extent" id="Top">
<div class="nav-panel">
<p>
Next: <a href="#Introduction" accesskey="n" rel="next">Introduction</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h1 class="top" id="Org_002droam-User-Manual"><span>Org-roam User Manual<a class="copiable-link" href="#Org_002droam-User-Manual"> &para;</a></span></h1>
<p>This manual is for Org-roam version 2.3.1.
</p>
<blockquote class="quotation">
<p>Copyright (C) 2020-2025 Jethro Kuan &lt;jethrokuan95@gmail.com&gt;
</p>
<p>You can redistribute this document and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation, either
version 3 of the License, or (at your option) any later version.
</p>
<p>This document is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
</p>
</blockquote>
<ul class="mini-toc">
<li><a href="#Introduction" accesskey="1">Introduction</a></li>
<li><a href="#Target-Audience" accesskey="2">Target Audience</a></li>
<li><a href="#A-Brief-Introduction-to-the-Zettelkasten-Method" accesskey="3">A Brief Introduction to the Zettelkasten Method</a></li>
<li><a href="#Installation" accesskey="4">Installation</a></li>
<li><a href="#Getting-Started" accesskey="5">Getting Started</a></li>
<li><a href="#Customizing-Node-Caching" accesskey="6">Customizing Node Caching</a></li>
<li><a href="#The-Org_002droam-Buffer" accesskey="7">The Org-roam Buffer</a></li>
<li><a href="#Node-Properties" accesskey="8">Node Properties</a></li>
<li><a href="#Citations" accesskey="9">Citations</a></li>
<li><a href="#Completion">Completion</a></li>
<li><a href="#Encryption">Encryption</a></li>
<li><a href="#The-Templating-System">The Templating System</a></li>
<li><a href="#Extensions">Extensions</a></li>
<li><a href="#Performance-Optimization">Performance Optimization</a></li>
<li><a href="#The-Org_002dmode-Ecosystem">The Org-mode Ecosystem</a></li>
<li><a href="#FAQ">FAQ</a></li>
<li><a href="#Developer_0027s-Guide-to-Org_002droam">Developer&rsquo;s Guide to Org-roam</a></li>
<li><a href="#Appendix">Appendix</a></li>
<li><a href="#Keystroke-Index">Keystroke Index</a></li>
<li><a href="#Command-Index">Command Index</a></li>
<li><a href="#Function-Index">Function Index</a></li>
<li><a href="#Variable-Index">Variable Index</a></li>
</ul>
<hr>
<div class="chapter-level-extent" id="Introduction">
<div class="nav-panel">
<p>
Next: <a href="#Target-Audience" accesskey="n" rel="next">Target Audience</a>, Previous: <a href="#Top" accesskey="p" rel="prev">Org-roam User Manual</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Introduction-1"><span>1 Introduction<a class="copiable-link" href="#Introduction-1"> &para;</a></span></h2>
<p>Org-roam is a tool for networked thought. It reproduces some of <a class="uref" href="https://roamresearch.com/">Roam
Research&rsquo;s</a> <a class="footnote" id="DOCF1" href="#FOOT1"><sup>1</sup></a> key features within <a class="uref" href="https://orgmode.org/">Org-mode</a>.
</p>
<p>Org-roam allows for effortless non-hierarchical note-taking: with Org-roam,
notes flow naturally, making note-taking fun and easy. Org-roam augments the
Org-mode syntax, and will work for anyone already using Org-mode for their
personal wiki.
</p>
<p>Org-roam leverages the mature ecosystem around Org-mode. For example, it has
first-class support for <a class="uref" href="https://github.com/jkitchin/org-ref">org-ref</a> for citation management, and is able to
piggyback off Org&rsquo;s excellent LaTeX and source-block evaluation capabilities.
</p>
<p>Org-roam provides these benefits over other tooling:
</p>
<ul class="itemize mark-bullet">
<li><strong class="strong">Privacy and Security:</strong> Your personal wiki belongs only to you, entirely
offline and in your control. Encrypt your notes with GPG.
</li><li><strong class="strong">Longevity of Plain Text:</strong> Unlike web solutions like Roam Research, the notes
are first and foremost plain Org-mode files &ndash; Org-roam simply builds an
auxiliary database to give the personal wiki superpowers. Having your notes
in plain-text is crucial for the longevity of your wiki. Never have to worry
about proprietary web solutions being taken down. The notes are still
functional even if Org-roam ceases to exist.
</li><li><strong class="strong">Free and Open Source:</strong> Org-roam is free and open-source, which means that if
you feel unhappy with any part of Org-roam, you may choose to extend Org-roam,
or open a pull request.
</li><li><strong class="strong">Leverage the Org-mode ecosystem:</strong> Over the decades, Emacs and Org-mode has
developed into a mature system for plain-text organization. Building upon
Org-mode already puts Org-roam light-years ahead of many other solutions.
</li><li><strong class="strong">Built on Emacs:</strong> Emacs is also a fantastic interface for editing text, and
Org-roam inherits many of the powerful text-navigation and editing packages
available to Emacs.
</li></ul>
<hr>
</div>
<div class="chapter-level-extent" id="Target-Audience">
<div class="nav-panel">
<p>
Next: <a href="#A-Brief-Introduction-to-the-Zettelkasten-Method" accesskey="n" rel="next">A Brief Introduction to the Zettelkasten Method</a>, Previous: <a href="#Introduction" accesskey="p" rel="prev">Introduction</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Target-Audience-1"><span>2 Target Audience<a class="copiable-link" href="#Target-Audience-1"> &para;</a></span></h2>
<p>Org-roam is a tool that will appear unfriendly to anyone unfamiliar with Emacs
and Org-mode, but it is also extremely powerful to those willing to put effort
in mastering the intricacies. Org-roam stands on the shoulders of giants. Emacs
was first created in 1976, and remains the tool of choice for many for editing
text and designing textual interfaces. The malleability of Emacs allowed the
creation of Org-mode, an all-purpose plain-text system for maintaining TODO
lists, planning projects, and authoring documents. Both of these tools are
incredibly vast and require significant time investment to master.
</p>
<p>Org-roam assumes only basic familiarity with these tools. It is not difficult to
get up and running with basic text-editing functionality, but one will only
fully appreciate the power of building Roam functionality into Emacs and
Org-mode when the usage of these tools become more advanced.
</p>
<p>One key advantage to Org-roam is that building on top of Emacs gives it
malleability. This is especially important for note-taking workflows. It is our
belief that note-taking workflows are extremely personal, and there is no one
tool that&rsquo;s perfect for you. Org-mode and Org-roam allows you to discover what
works for you, and build that perfect tool for yourself.
</p>
<p>If you are new to the software, and choose to take this leap of faith, I hope
you find yourself equally entranced as Neal Stephenson was.
</p>
<blockquote class="quotation">
<p>Emacs outshines all other editing software in approximately the same way that
the noonday sun does the stars. It is not just bigger and brighter; it simply
makes everything else vanish. Neal Stephenson, In the Beginning was the
Command Line (1998)
</p>
</blockquote>
<hr>
</div>
<div class="chapter-level-extent" id="A-Brief-Introduction-to-the-Zettelkasten-Method">
<div class="nav-panel">
<p>
Next: <a href="#Installation" accesskey="n" rel="next">Installation</a>, Previous: <a href="#Target-Audience" accesskey="p" rel="prev">Target Audience</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="A-Brief-Introduction-to-the-Zettelkasten-Method-1"><span>3 A Brief Introduction to the Zettelkasten Method<a class="copiable-link" href="#A-Brief-Introduction-to-the-Zettelkasten-Method-1"> &para;</a></span></h2>
<p>Org-roam provides utilities for maintaining a digital slip-box. This section
aims to provide a brief introduction to the &ldquo;slip-box&rdquo;, or &ldquo;Zettelkasten&rdquo;
method. By providing some background on the method, we hope that the design
decisions of Org-roam will become clear, and that will aid in using Org-roam
appropriately. In this section we will introduce terms commonly used within the
Zettelkasten community and the Org-roam forums.
</p>
<p>The Zettelkasten is a personal tool for thinking and writing. It places heavy
emphasis on connecting ideas, building up a web of thought. Hence, it is well
suited for knowledge workers and intellectual tasks, such as conducting
research. The Zettelkasten can act as a research partner, where conversations
with it may produce new and surprising lines of thought.
</p>
<p>This method is attributed to German sociologist Niklas Luhmann, who using the
method had produced volumes of written works. Luhmann&rsquo;s slip-box was simply a
box of cards. These cards are small &ndash; often only large enough to fit a single
concept. The size limitation encourages ideas to be broken down into individual
concepts. These ideas are explicitly linked together. The breakdown of ideas
encourages tangential exploration of ideas, increasing the surface for thought.
Making linking explicit between notes also encourages one to think about the
connections between concepts.
</p>
<p>At the corner of each note, Luhmann ascribed each note with an ordered ID,
allowing him to link and jump between notes. In Org-roam, we simply use
hyperlinks.
</p>
<p>Org-roam is the slip-box, digitalized in Org-mode. Every zettel (card) is a
plain-text, Org-mode file. In the same way one would maintain a paper slip-box,
Org-roam makes it easy to create new zettels, pre-filling boilerplate content
using a powerful templating system.
</p>
<p><strong class="strong">Fleeting notes</strong>
</p>
<p>A slip-box requires a method for quickly capturing ideas. These are called
<strong class="strong">fleeting notes</strong>: they are simple reminders of information or ideas that will
need to be processed later on, or trashed. This is typically accomplished using
<code class="code">org-capture</code> (see <a data-manual="org" href="https://www.gnu.org/software/emacs/manual/html_mono/org.html#Capture">(org)Capture</a>), or using Org-roam&rsquo;s daily notes
functionality (see <a class="ref" href="#org_002droam_002ddailies">org-roam-dailies</a>). This provides a central inbox for collecting
thoughts, to be processed later into permanent notes.
</p>
<p><strong class="strong">Permanent notes</strong>
</p>
<p>Permanent notes are further split into two categories: <strong class="strong">literature notes</strong> and
<strong class="strong">concept notes</strong>. Literature notes can be brief annotations on a particular
source (e.g. book, website or paper), that you&rsquo;d like to access later on.
Concept notes require much more care in authoring: they need to be
self-explanatory and detailed. Org-roam&rsquo;s templating system supports the
addition of different templates to facilitate the creation of these notes.
</p>
<p>For further reading on the Zettelkasten method, &ldquo;How to Take Smart Notes&rdquo; by
Sonke Ahrens is a decent guide.
</p>
<hr>
</div>
<div class="chapter-level-extent" id="Installation">
<div class="nav-panel">
<p>
Next: <a href="#Getting-Started" accesskey="n" rel="next">Getting Started</a>, Previous: <a href="#A-Brief-Introduction-to-the-Zettelkasten-Method" accesskey="p" rel="prev">A Brief Introduction to the Zettelkasten Method</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Installation-1"><span>4 Installation<a class="copiable-link" href="#Installation-1"> &para;</a></span></h2>
<p>Org-roam can be installed using Emacs&rsquo; package manager or manually from its
development repository.
</p>
<ul class="mini-toc">
<li><a href="#Installing-from-MELPA" accesskey="1">Installing from MELPA</a></li>
<li><a href="#Installing-from-Source" accesskey="2">Installing from Source</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Installing-from-MELPA">
<div class="nav-panel">
<p>
Next: <a href="#Installing-from-Source" accesskey="n" rel="next">Installing from Source</a>, Up: <a href="#Installation" accesskey="u" rel="up">Installation</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Installing-from-MELPA-1"><span>4.1 Installing from MELPA<a class="copiable-link" href="#Installing-from-MELPA-1"> &para;</a></span></h3>
<p>Org-roam is available from Melpa and Melpa-Stable. If you haven&rsquo;t used Emacs&rsquo;
package manager before, you may familiarize yourself with it by reading the
documentation in the Emacs manual, see <a data-manual="emacs" href="https://www.gnu.org/software/emacs/manual/html_mono/emacs.html#Packages">(emacs)Packages</a>. Then, add one of the
archives to &lsquo;<samp class="samp">package-archives</samp>&rsquo;:
</p>
<ul class="itemize mark-bullet">
<li>To use Melpa:
</li></ul>
<div class="example lisp">
<pre class="lisp-preformatted">(require 'package)
(add-to-list 'package-archives
'(&quot;melpa&quot; . &quot;http://melpa.org/packages/&quot;) t)
</pre></div>
<ul class="itemize mark-bullet">
<li>To use Melpa-Stable:
</li></ul>
<div class="example lisp">
<pre class="lisp-preformatted">(require 'package)
(add-to-list 'package-archives
'(&quot;melpa-stable&quot; . &quot;http://stable.melpa.org/packages/&quot;) t)
</pre></div>
<p>Org-roam also depends on a recent version of Org, which can be obtained in Org&rsquo;s
package repository (see <a data-manual="org" href="https://www.gnu.org/software/emacs/manual/html_mono/org.html#Installation">(org)Installation</a>).
</p>
<p>Once you have done that, you can install Org-roam and its dependencies
using:
</p>
<div class="example">
<pre class="example-preformatted">M-x package-install RET org-roam RET
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="Installing-from-Source">
<div class="nav-panel">
<p>
Previous: <a href="#Installing-from-MELPA" accesskey="p" rel="prev">Installing from MELPA</a>, Up: <a href="#Installation" accesskey="u" rel="up">Installation</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Installing-from-Source-1"><span>4.2 Installing from Source<a class="copiable-link" href="#Installing-from-Source-1"> &para;</a></span></h3>
<p>You may install Org-roam directly from the repository on <a class="uref" href="https://github.com/org-roam/org-roam">GitHub</a> if you like.
This will give you access to the latest version hours or days before it appears
on MELPA, and months (or more) before it is added to the Debian or Ubuntu
repositories. This will also give you access to various developmental branches
that may be available.
</p>
<p>Note, however, that development version, and especially any feature branches,
may not always be in working order. You&rsquo;ll need to be prepared to do some
debugging, or to manually roll-back to working versions, if you install from
GitHub.
</p>
<p>Installing from GitHub requires that you clone the repository:
</p>
<div class="example">
<pre class="example-preformatted">git clone https://github.com/org-roam/org-roam.git /path/to/org/roam
</pre></div>
<p>where <code class="code">./path/to/org/roam</code> is the location you will store your copy of the code.
</p>
<p>Next, you need to add this location to your load path, and <code class="code">require</code> the
Org-roam library. Add the following code to your <code class="code">.emacs</code>:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(add-to-list 'load-path &quot;/path/to/org/roam&quot;)
(require 'org-roam)
</pre></div>
<p>You now have Org-roam installed. However, you don&rsquo;t necessarily have the
dependencies that it requires. These include:
</p>
<ul class="itemize mark-bullet">
<li>dash
</li><li>f
</li><li>s
</li><li>org
</li><li>emacsql
</li><li>magit-section
</li></ul>
<p>You can install this manually as well, or get the latest version from MELPA. You
may wish to use <a class="uref" href="https://github.com/jwiegley/use-package">use-package</a>, <a class="uref" href="https://github.com/raxod502/straight.el">straight.el</a> to help manage this.
</p>
<p>If you would like to install the manual for access from Emacs&rsquo; built-in Info
system, you&rsquo;ll need to compile the .texi source file, and install it in an
appropriate location.
</p>
<p>To compile the .texi source file, from a terminal navigate to the <code class="code">/doc</code>
subdirectory of the Org-roam repository, and run the following:
</p>
<div class="example">
<pre class="example-preformatted">make infodir=/path/to/my/info/files install-info
</pre></div>
<p>Where <code class="code">/path/to/my/info/files</code> is the location where you keep info files. This
target directory needs to be stored in the variable
&lsquo;Info-default-directory-list&lsquo;. If you aren&rsquo;t using one of the default info
locations, you can configure this with the following in your <code class="code">.emacs</code> file:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(require 'info)
(add-to-list 'Info-default-directory-list
&quot;/path/to/my/info/files&quot;)
</pre></div>
<p>You can also use one of the default locations, such as:
</p>
<ul class="itemize mark-bullet">
<li><em class="emph">usr/local/share/info</em>
</li><li><em class="emph">usr/share/info</em>
</li><li><em class="emph">usr/local/share/info</em>
</li></ul>
<p>If you do this, you&rsquo;ll need to make sure you have write-access to that location,
or run the above <code class="code">make</code> command as root.
</p>
<p>Now that the info file is ready, you need to add it to the corresponding <code class="code">dir</code>
file:
</p>
<div class="example">
<pre class="example-preformatted">install-info /path/to/my/info/files/org-roam.info /path/to/my/info/files/dir
</pre></div>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Getting-Started">
<div class="nav-panel">
<p>
Next: <a href="#Customizing-Node-Caching" accesskey="n" rel="next">Customizing Node Caching</a>, Previous: <a href="#Installation" accesskey="p" rel="prev">Installation</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Getting-Started-1"><span>5 Getting Started<a class="copiable-link" href="#Getting-Started-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#The-Org_002droam-Node" accesskey="1">The Org-roam Node</a></li>
<li><a href="#Links-between-Nodes" accesskey="2">Links between Nodes</a></li>
<li><a href="#Setting-up-Org_002droam" accesskey="3">Setting up Org-roam</a></li>
<li><a href="#Creating-and-Linking-Nodes" accesskey="4">Creating and Linking Nodes</a></li>
<li><a href="#Customizing-Node-Completions" accesskey="5">Customizing Node Completions</a></li>
</ul>
<hr>
<div class="section-level-extent" id="The-Org_002droam-Node">
<div class="nav-panel">
<p>
Next: <a href="#Links-between-Nodes" accesskey="n" rel="next">Links between Nodes</a>, Up: <a href="#Getting-Started" accesskey="u" rel="up">Getting Started</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="The-Org_002droam-Node-1"><span>5.1 The Org-roam Node<a class="copiable-link" href="#The-Org_002droam-Node-1"> &para;</a></span></h3>
<p>We first begin with some terminology we&rsquo;ll use throughout the manual. We term
the basic denomination in Org-roam a node. We define a node as follows:
</p>
<blockquote class="quotation">
<p>A node is any headline or top level file with an ID.
</p>
</blockquote>
<p>For example, with this example file content:
</p>
<div class="example">
<pre class="example-preformatted">:PROPERTIES:
:ID: foo
:END:
#+title: Foo
* Bar
:PROPERTIES:
:ID: bar
:END:
</pre></div>
<p>We create two nodes:
</p>
<ol class="enumerate">
<li> A file node &ldquo;Foo&rdquo; with id <code class="code">foo</code>.
</li><li> A headline node &ldquo;Bar&rdquo; with id <code class="code">bar</code>.
</li></ol>
<p>Headlines without IDs will not be considered Org-roam nodes. Org IDs can be
added to files or headlines via the interactive command <code class="code">M-x org-id-get-create</code>.
</p>
<hr>
</div>
<div class="section-level-extent" id="Links-between-Nodes">
<div class="nav-panel">
<p>
Next: <a href="#Setting-up-Org_002droam" accesskey="n" rel="next">Setting up Org-roam</a>, Previous: <a href="#The-Org_002droam-Node" accesskey="p" rel="prev">The Org-roam Node</a>, Up: <a href="#Getting-Started" accesskey="u" rel="up">Getting Started</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Links-between-Nodes-1"><span>5.2 Links between Nodes<a class="copiable-link" href="#Links-between-Nodes-1"> &para;</a></span></h3>
<p>We link between nodes using Org&rsquo;s standard ID link (e.g. <code class="code">id:foo</code>). While only
ID links will be considered during the computation of links between nodes,
Org-roam caches all other links in the documents for external use.
</p>
<hr>
</div>
<div class="section-level-extent" id="Setting-up-Org_002droam">
<div class="nav-panel">
<p>
Next: <a href="#Creating-and-Linking-Nodes" accesskey="n" rel="next">Creating and Linking Nodes</a>, Previous: <a href="#Links-between-Nodes" accesskey="p" rel="prev">Links between Nodes</a>, Up: <a href="#Getting-Started" accesskey="u" rel="up">Getting Started</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Setting-up-Org_002droam-1"><span>5.3 Setting up Org-roam<a class="copiable-link" href="#Setting-up-Org_002droam-1"> &para;</a></span></h3>
<p>Org-roam&rsquo;s capabilities stem from its aggressive caching: it crawls all files
within <code class="code">org-roam-directory</code>, and maintains a cache of all links and nodes.
</p>
<p>To start using Org-roam, pick a location to store the Org-roam files. The
directory that will contain your notes is specified by the variable
<code class="code">org-roam-directory</code>. Org-roam searches recursively within <code class="code">org-roam-directory</code>
for notes. This variable needs to be set before any calls to Org-roam functions.
</p>
<p>For this tutorial, create an empty directory, and set <code class="code">org-roam-directory</code>:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(make-directory &quot;~/org-roam&quot;)
(setq org-roam-directory (file-truename &quot;~/org-roam&quot;))
</pre></div>
<p>The <code class="code">file-truename</code> function is only necessary when you use symbolic links
inside <code class="code">org-roam-directory</code>: Org-roam does not resolve symbolic links. One can
however instruct Emacs to always resolve symlinks, at a performance cost:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq find-file-visit-truename t)
</pre></div>
<p>Next, we setup Org-roam to run functions on file changes to maintain cache
consistency. This is achieved by running <code class="code">M-x org-roam-db-autosync-mode</code>. To
ensure that Org-roam is available on startup, place this in your Emacs
configuration:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(org-roam-db-autosync-mode)
</pre></div>
<p>To build the cache manually, run <code class="code">M-x org-roam-db-sync</code>. Cache builds may
take a while the first time, but subsequent builds are often instantaneous
because they only reprocess modified files.
</p>
<hr>
</div>
<div class="section-level-extent" id="Creating-and-Linking-Nodes">
<div class="nav-panel">
<p>
Next: <a href="#Customizing-Node-Completions" accesskey="n" rel="next">Customizing Node Completions</a>, Previous: <a href="#Setting-up-Org_002droam" accesskey="p" rel="prev">Setting up Org-roam</a>, Up: <a href="#Getting-Started" accesskey="u" rel="up">Getting Started</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Creating-and-Linking-Nodes-1"><span>5.4 Creating and Linking Nodes<a class="copiable-link" href="#Creating-and-Linking-Nodes-1"> &para;</a></span></h3>
<p>Org-roam makes it easy to create notes and link them together. There are 2 main
functions for creating nodes:
</p>
<ul class="itemize mark-bullet">
<li><code class="code">org-roam-node-insert</code>: creates a node if it does not exist, and inserts a
link to the node at point.
</li><li><code class="code">org-roam-node-find</code>: creates a node if it does not exist, and visits the
node.
</li><li><code class="code">org-roam-capture</code>: creates a node if it does not exist, and restores the
current window configuration upon completion.
</li></ul>
<p>Let&rsquo;s first try <code class="code">org-roam-node-find</code>. Calling <code class="code">M-x org-roam-node-find</code> will
show a list of titles for nodes that reside in <code class="code">org-roam-directory</code>. It should
show nothing right now, since there are no notes in the directory. Enter the
title of the note you wish to create, and press <code class="code">RET</code>. This begins the note
creation process. This process uses <code class="code">org-capture</code>&rsquo;s templating system, and can
be customized (see <a class="ref" href="#The-Templating-System">The Templating System</a>). Using the default template, pressing
<code class="code">C-c C-c</code> finishes the note capture.
</p>
<p>Now that we have a node, we can try inserting a link to the node using <code class="code">M-x
org-roam-node-insert</code>. This brings up the list of nodes, which should contain
the node you just created. Selecting the node will insert an <code class="code">id:</code> link to the
node. If you instead entered a title that does not exist, you will once again be
brought through the node creation process.
</p>
<p>One can also conveniently insert links via the completion-at-point functions
Org-roam provides (see <a class="ref" href="#Completion">Completion</a>).
</p>
<hr>
</div>
<div class="section-level-extent" id="Customizing-Node-Completions">
<div class="nav-panel">
<p>
Previous: <a href="#Creating-and-Linking-Nodes" accesskey="p" rel="prev">Creating and Linking Nodes</a>, Up: <a href="#Getting-Started" accesskey="u" rel="up">Getting Started</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Customizing-Node-Completions-1"><span>5.5 Customizing Node Completions<a class="copiable-link" href="#Customizing-Node-Completions-1"> &para;</a></span></h3>
<p>Node selection is achieved via the <code class="code">completing-read</code> interface, typically
through <code class="code">org-roam-node-read</code>. The presentation of these nodes are governed by
<code class="code">org-roam-node-display-template</code>.
</p>
<ul class="itemize mark-bullet">
<li>Variable: org-roam-node-display-template
<p>Configures display formatting for Org-roam node.
</p>
<p>Patterns of form &ldquo;${field-name:length}&rdquo; are interpolated based
on the current node.
</p>
<p>Each &ldquo;field-name&rdquo; is replaced with the return value of each
corresponding accessor function for org-roam-node, e.g.
&ldquo;${title}&rdquo; will be interpolated by the result of
org-roam-node-title. You can also define custom accessors using
cl-defmethod. For example, you can define:
</p>
<p>(cl-defmethod org-roam-node-my-title ((node org-roam-node))
(concat &ldquo;My &rdquo; (org-roam-node-title node)))
</p>
<p>and then reference it here or in the capture templates as
&ldquo;${my-title}&rdquo;.
</p>
<p>&ldquo;length&rdquo; is an optional specifier and declares how many
characters can be used to display the value of the corresponding
field. If it&rsquo;s not specified, the field will be inserted as is,
i.e. it won&rsquo;t be aligned nor trimmed. If it&rsquo;s an integer, the
field will be aligned accordingly and all the exceeding
characters will be trimmed out. If it&rsquo;s &ldquo;*&rdquo;, the field will use
as many characters as possible and will be aligned accordingly.
</p>
<p>A closure can also be assigned to this variable in which case the
closure is evaluated and the return value is used as the
template. The closure must evaluate to a valid template string.
</p></li></ul>
<p>If you&rsquo;re using a vertical completion framework, such as Ivy and Selectrum,
Org-roam supports the generation of an aligned, tabular completion interface.
For example, to include a column for tags up to 10 character widths wide, one
can set <code class="code">org-roam-node-display-template</code> as such:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-node-display-template
(concat &quot;${title:*} &quot;
(propertize &quot;${tags:10}&quot; 'face 'org-tag)))
</pre></div>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Customizing-Node-Caching">
<div class="nav-panel">
<p>
Next: <a href="#The-Org_002droam-Buffer" accesskey="n" rel="next">The Org-roam Buffer</a>, Previous: <a href="#Getting-Started" accesskey="p" rel="prev">Getting Started</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Customizing-Node-Caching-1"><span>6 Customizing Node Caching<a class="copiable-link" href="#Customizing-Node-Caching-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#How-to-cache" accesskey="1">How to cache</a></li>
<li><a href="#What-to-cache" accesskey="2">What to cache</a></li>
<li><a href="#When-to-cache" accesskey="3">When to cache</a></li>
</ul>
<hr>
<div class="section-level-extent" id="How-to-cache">
<div class="nav-panel">
<p>
Next: <a href="#What-to-cache" accesskey="n" rel="next">What to cache</a>, Up: <a href="#Customizing-Node-Caching" accesskey="u" rel="up">Customizing Node Caching</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-to-cache-1"><span>6.1 How to cache<a class="copiable-link" href="#How-to-cache-1"> &para;</a></span></h3>
<p>Org-roam uses a SQLite database to perform caching. This integration is
managed by the <a class="uref" href="https://github.com/magit/emacsql">emacsql</a> library. It should &ldquo;just work&rdquo;.
</p>
<hr>
</div>
<div class="section-level-extent" id="What-to-cache">
<div class="nav-panel">
<p>
Next: <a href="#When-to-cache" accesskey="n" rel="next">When to cache</a>, Previous: <a href="#How-to-cache" accesskey="p" rel="prev">How to cache</a>, Up: <a href="#Customizing-Node-Caching" accesskey="u" rel="up">Customizing Node Caching</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="What-to-cache-1"><span>6.2 What to cache<a class="copiable-link" href="#What-to-cache-1"> &para;</a></span></h3>
<p>By default, all nodes (any headline or file with an ID) are cached by Org-roam.
There are instances where you may want to have headlines with ID, but not have
them cached by Org-roam.
</p>
<p>To exclude a headline from the Org-roam database, set the <code class="code">ROAM_EXCLUDE</code>
property to a non-nil value. For example:
</p>
<div class="example">
<pre class="example-preformatted">* Foo
:PROPERTIES:
:ID: foo
:ROAM_EXCLUDE: t
:END:
</pre></div>
<p>One can also set <code class="code">org-roam-db-node-include-function</code>. For example, to exclude
all headlines with the <code class="code">ATTACH</code> tag from the Org-roam database, one can set:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-db-node-include-function
(lambda ()
(not (member &quot;ATTACH&quot; (org-get-tags)))))
</pre></div>
<p>Org-roam relied on the obtained Org AST for the buffer to parse links. However,
links appearing in some places (e.g. within property drawers) are not considered
by the Org AST to be links. Therefore, Org-roam takes special care of
additionally trying to process these links. Use
<code class="code">org-roam-db-extra-links-elements</code> to specify which additional Org AST element
types to consider.
</p>
<ul class="itemize mark-bullet">
<li>Variable: org-roam-db-extra-links-elements
<p>The list of Org element types to include for parsing by Org-roam.
</p>
<p>By default, when parsing Org&rsquo;s AST, links within keywords and
property drawers are not parsed as links. Sometimes however, it
is desirable to parse and cache these links (e.g. hiding links in
a property drawer).
</p></li></ul>
<p>Additionally, one may want to ignore certain keys from being excluded within
property drawers. For example, we would not want <code class="code">ROAM_REFS</code> links to be
self-referential. Hence, to exclude specific keys, we use
<code class="code">org-roam-db-extra-links-exclude-keys</code>.
</p>
<ul class="itemize mark-bullet">
<li>Variable: org-roam-db-extra-links-exclude-keys
<p>Keys to ignore when mapping over links.
</p>
<p>The car of the association list is the Org element type (e.g. keyword). The
cdr is a list of case-insensitive strings to exclude from being treated as
links.
</p></li></ul>
<hr>
</div>
<div class="section-level-extent" id="When-to-cache">
<div class="nav-panel">
<p>
Previous: <a href="#What-to-cache" accesskey="p" rel="prev">What to cache</a>, Up: <a href="#Customizing-Node-Caching" accesskey="u" rel="up">Customizing Node Caching</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="When-to-cache-1"><span>6.3 When to cache<a class="copiable-link" href="#When-to-cache-1"> &para;</a></span></h3>
<p>By default, Org-roam is eager in caching: each time an Org-roam file is modified
and saved, it updates the database for the corresponding file. This keeps the
database up-to-date, causing the least surprise when using the interactive
commands.
</p>
<p>However, depending on how large your Org files are, database updating can be a
slow operation. You can disable the automatic updating of the database by
setting <code class="code">org-roam-db-update-on-save</code> to <code class="code">nil</code>.
</p>
<ul class="itemize mark-bullet">
<li>Variable: org-roam-db-update-on-save
</li></ul>
<p>If t, update the Org-roam database upon saving the file. Disable this if your
files are large and updating the database is slow.
</p>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="The-Org_002droam-Buffer">
<div class="nav-panel">
<p>
Next: <a href="#Node-Properties" accesskey="n" rel="next">Node Properties</a>, Previous: <a href="#Customizing-Node-Caching" accesskey="p" rel="prev">Customizing Node Caching</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="The-Org_002droam-Buffer-1"><span>7 The Org-roam Buffer<a class="copiable-link" href="#The-Org_002droam-Buffer-1"> &para;</a></span></h2>
<p>Org-roam provides the Org-roam buffer: an interface to view relationships with
other notes (backlinks, reference links, unlinked references etc.). There are
two main commands to use here:
</p>
<ul class="itemize mark-bullet">
<li><code class="code">org-roam-buffer-toggle</code>: Launch an Org-roam buffer that tracks the node
currently at point. This means that the content of the buffer changes as the
point is moved, if necessary.
</li><li><code class="code">org-roam-buffer-display-dedicated</code>: Launch an Org-roam buffer for a specific
node without visiting its file. Unlike <code class="code">org-roam-buffer-toggle</code> you can have
multiple such buffers and their content won&rsquo;t be automatically replaced with a
new node at point.
</li></ul>
<p>To bring up a buffer that tracks the current node at point, call <code class="code">M-x
org-roam-buffer-toggle</code>.
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-buffer-toggle
<p>Toggle display of the <code class="code">org-roam-buffer</code>.
</p></li></ul>
<p>To bring up a buffer that&rsquo;s dedicated for a specific node, call <code class="code">M-x
org-roam-buffer-display-dedicated</code>.
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-buffer-display-dedicated
<p>Launch node dedicated Org-roam buffer without visiting the node itself.
</p></li></ul>
<ul class="mini-toc">
<li><a href="#Navigating-the-Org_002droam-Buffer" accesskey="1">Navigating the Org-roam Buffer</a></li>
<li><a href="#Configuring-what-is-displayed-in-the-buffer" accesskey="2">Configuring what is displayed in the buffer</a></li>
<li><a href="#Configuring-the-Org_002droam-buffer-display" accesskey="3">Configuring the Org-roam buffer display</a></li>
<li><a href="#Styling-the-Org_002droam-buffer" accesskey="4"><strong class="strong">TODO</strong> Styling the Org-roam buffer</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Navigating-the-Org_002droam-Buffer">
<div class="nav-panel">
<p>
Next: <a href="#Configuring-what-is-displayed-in-the-buffer" accesskey="n" rel="next">Configuring what is displayed in the buffer</a>, Up: <a href="#The-Org_002droam-Buffer" accesskey="u" rel="up">The Org-roam Buffer</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Navigating-the-Org_002droam-Buffer-1"><span>7.1 Navigating the Org-roam Buffer<a class="copiable-link" href="#Navigating-the-Org_002droam-Buffer-1"> &para;</a></span></h3>
<p>The Org-roam buffer uses <code class="code">magit-section</code>, making the typical <code class="code">magit-section</code>
keybindings available. Here are several of the more useful ones:
</p>
<ul class="itemize mark-bullet">
<li><code class="code">M-{N}</code>: <code class="code">magit-section-show-level-{N}-all</code>
</li><li><code class="code">n</code>: <code class="code">magit-section-forward</code>
</li><li><code class="code">&lt;TAB&gt;</code>: <code class="code">magit-section-toggle</code>
</li><li><code class="code">&lt;RET&gt;</code>: <code class="code">org-roam-buffer-visit-thing</code>
</li></ul>
<p><code class="code">org-roam-buffer-visit-thing</code> is a placeholder command, that is replaced by
section-specific commands such as <code class="code">org-roam-node-visit</code>.
</p>
<hr>
</div>
<div class="section-level-extent" id="Configuring-what-is-displayed-in-the-buffer">
<div class="nav-panel">
<p>
Next: <a href="#Configuring-the-Org_002droam-buffer-display" accesskey="n" rel="next">Configuring the Org-roam buffer display</a>, Previous: <a href="#Navigating-the-Org_002droam-Buffer" accesskey="p" rel="prev">Navigating the Org-roam Buffer</a>, Up: <a href="#The-Org_002droam-Buffer" accesskey="u" rel="up">The Org-roam Buffer</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Configuring-what-is-displayed-in-the-buffer-1"><span>7.2 Configuring what is displayed in the buffer<a class="copiable-link" href="#Configuring-what-is-displayed-in-the-buffer-1"> &para;</a></span></h3>
<p>There are currently 3 provided widget types:
</p>
<dl class="table">
<dt>Backlinks</dt>
<dd><p>View (preview of) nodes that link to this node
</p></dd>
<dt>Reference Links</dt>
<dd><p>Nodes that reference this node (see <a class="ref" href="#Refs">Refs</a>)
</p></dd>
<dt>Unlinked references</dt>
<dd><p>View nodes that contain text that match the nodes
title/alias but are not linked
</p></dd>
</dl>
<p>To configure what sections are displayed in the buffer, set <code class="code">org-roam-mode-sections</code>.
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-mode-sections
(list #'org-roam-backlinks-section
#'org-roam-reflinks-section
;; #'org-roam-unlinked-references-section
))
</pre></div>
<p>Note that computing unlinked references may be slow, and has not been added in by default.
</p>
<p>For each section function, you can pass args along to modify its behaviour. For
example, if you want to render unique sources for backlinks (and also keep
rendering reference links), set <code class="code">org-roam-mode-sections</code> as follows:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-mode-sections
'((org-roam-backlinks-section :unique t)
org-roam-reflinks-section))
</pre></div>
<p>The backlinks section <code class="code">org-roam-backlinks-section</code> also supports a
predicate to filter backlinks, <code class="code">:show-backlink-p</code>. This can be used
as follows:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(defun my-org-roam-show-backlink-p (backlink)
(not (member &quot;daily&quot; (org-roam-node-tags (org-roam-backlink-source-node backlink)))))
(setq org-roam-mode-sections
'((org-roam-backlinks-section :unique t :show-backlink-p my-org-roam-show-backlink-p)
org-roam-reflinks-section))
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="Configuring-the-Org_002droam-buffer-display">
<div class="nav-panel">
<p>
Next: <a href="#Styling-the-Org_002droam-buffer" accesskey="n" rel="next"><strong class="strong">TODO</strong> Styling the Org-roam buffer</a>, Previous: <a href="#Configuring-what-is-displayed-in-the-buffer" accesskey="p" rel="prev">Configuring what is displayed in the buffer</a>, Up: <a href="#The-Org_002droam-Buffer" accesskey="u" rel="up">The Org-roam Buffer</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Configuring-the-Org_002droam-buffer-display-1"><span>7.3 Configuring the Org-roam buffer display<a class="copiable-link" href="#Configuring-the-Org_002droam-buffer-display-1"> &para;</a></span></h3>
<p>Org-roam does not control how the pop-up buffer is displayed: this is left to
the user. The author&rsquo;s recommended configuration is as follows:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(add-to-list 'display-buffer-alist
'(&quot;\\*org-roam\\*&quot;
(display-buffer-in-direction)
(direction . right)
(window-width . 0.33)
(window-height . fit-window-to-buffer)))
</pre></div>
<p>Crucially, the window is a regular window (not a side-window), and this allows
for predictable navigation:
</p>
<ul class="itemize mark-bullet">
<li><code class="code">RET</code> navigates to thing-at-point in the current window, replacing the
Org-roam buffer.
</li><li><code class="code">C-u RET</code> navigates to thing-at-point in the other window.
</li></ul>
<p>For users that prefer using a side-window for the org-roam buffer, the following
example configuration should provide a good starting point:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(add-to-list 'display-buffer-alist
'(&quot;\\*org-roam\\*&quot;
(display-buffer-in-side-window)
(side . right)
(slot . 0)
(window-width . 0.33)
(window-parameters . ((no-other-window . t)
(no-delete-other-windows . t)))))
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="Styling-the-Org_002droam-buffer">
<div class="nav-panel">
<p>
Previous: <a href="#Configuring-the-Org_002droam-buffer-display" accesskey="p" rel="prev">Configuring the Org-roam buffer display</a>, Up: <a href="#The-Org_002droam-Buffer" accesskey="u" rel="up">The Org-roam Buffer</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="TODO-Styling-the-Org_002droam-buffer"><span>7.4 <strong class="strong">TODO</strong> Styling the Org-roam buffer<a class="copiable-link" href="#TODO-Styling-the-Org_002droam-buffer"> &para;</a></span></h3>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Node-Properties">
<div class="nav-panel">
<p>
Next: <a href="#Citations" accesskey="n" rel="next">Citations</a>, Previous: <a href="#The-Org_002droam-Buffer" accesskey="p" rel="prev">The Org-roam Buffer</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Node-Properties-1"><span>8 Node Properties<a class="copiable-link" href="#Node-Properties-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#Standard-Org-properties" accesskey="1">Standard Org properties</a></li>
<li><a href="#Titles-and-Aliases" accesskey="2">Titles and Aliases</a></li>
<li><a href="#Tags" accesskey="3">Tags</a></li>
<li><a href="#Refs" accesskey="4">Refs</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Standard-Org-properties">
<div class="nav-panel">
<p>
Next: <a href="#Titles-and-Aliases" accesskey="n" rel="next">Titles and Aliases</a>, Up: <a href="#Node-Properties" accesskey="u" rel="up">Node Properties</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Standard-Org-properties-1"><span>8.1 Standard Org properties<a class="copiable-link" href="#Standard-Org-properties-1"> &para;</a></span></h3>
<p>Org-roam caches most of the standard Org properties. The full list now includes:
</p>
<ul class="itemize mark-bullet">
<li>outline level
</li><li>todo state
</li><li>priority
</li><li>scheduled
</li><li>deadline
</li><li>tags
</li></ul>
<hr>
</div>
<div class="section-level-extent" id="Titles-and-Aliases">
<div class="nav-panel">
<p>
Next: <a href="#Tags" accesskey="n" rel="next">Tags</a>, Previous: <a href="#Standard-Org-properties" accesskey="p" rel="prev">Standard Org properties</a>, Up: <a href="#Node-Properties" accesskey="u" rel="up">Node Properties</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Titles-and-Aliases-1"><span>8.2 Titles and Aliases<a class="copiable-link" href="#Titles-and-Aliases-1"> &para;</a></span></h3>
<p>Each node has a single title. For file nodes, this is specified with the
&lsquo;#+title&lsquo; property for the file. For headline nodes, this is the main text.
</p>
<p>Nodes can also have multiple aliases. Aliases allow searching for nodes via an
alternative name. For example, one may want to assign a well-known acronym (AI)
to a node titled &ldquo;Artificial Intelligence&rdquo;.
</p>
<p>To assign an alias to a node, add the &ldquo;ROAM<em class="math">_ALIASES</em>&rdquo; property to the node:
</p>
<div class="example">
<pre class="example-preformatted">* Artificial Intelligence
:PROPERTIES:
:ROAM_ALIASES: AI
:END:
</pre></div>
<p>Alternatively, Org-roam provides some functions to add or remove aliases.
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-alias-add alias
<p>Add ALIAS to the node at point. When called interactively, prompt for the
alias to add.
</p>
</li><li>Function: org-roam-alias-remove
<p>Remove an alias from the node at point.
</p></li></ul>
<hr>
</div>
<div class="section-level-extent" id="Tags">
<div class="nav-panel">
<p>
Next: <a href="#Refs" accesskey="n" rel="next">Refs</a>, Previous: <a href="#Titles-and-Aliases" accesskey="p" rel="prev">Titles and Aliases</a>, Up: <a href="#Node-Properties" accesskey="u" rel="up">Node Properties</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Tags-1"><span>8.3 Tags<a class="copiable-link" href="#Tags-1"> &para;</a></span></h3>
<p>Tags for top-level (file) nodes are pulled from the variable <code class="code">org-file-tags</code>,
which is set by the <code class="code">#+filetags</code> keyword, as well as other tags the file may
have inherited. Tags for headline level nodes are regular Org tags.
</p>
<p>Note that the <code class="code">#+filetags</code> keyword results in tags being inherited by headers
within the file. This makes it impossible for selective tag inheritance: i.e.
either tag inheritance is turned off, or all headline nodes will inherit the
tags from the file node. This is a design compromise of Org-roam.
</p>
<hr>
</div>
<div class="section-level-extent" id="Refs">
<div class="nav-panel">
<p>
Previous: <a href="#Tags" accesskey="p" rel="prev">Tags</a>, Up: <a href="#Node-Properties" accesskey="u" rel="up">Node Properties</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Refs-1"><span>8.4 Refs<a class="copiable-link" href="#Refs-1"> &para;</a></span></h3>
<p>Refs are unique identifiers for nodes. These keys allow references to the key to
show up in the Org-roam buffer. For example, a node for a website may use the URL
as the ref, and a node for a paper may use an Org-ref citation key.
</p>
<p>To add a ref, add to the &ldquo;ROAM<em class="math">_REFS</em>&rdquo; property as follows:
</p>
<div class="example">
<pre class="example-preformatted">* Google
:PROPERTIES:
:ROAM_REFS: https://www.google.com/
:END:
</pre></div>
<p>With the above example, if another node links to <a class="uref" href="https://www.google.com/">https://www.google.com/</a>, it
will show up as a “reference backlink”.
</p>
<p>These keys also come in useful for when taking website notes, using the
<code class="code">roam-ref</code> protocol (see <a class="ref" href="#org_002droam_002dprotocol">org-roam-protocol</a>).
</p>
<p>You may assign multiple refs to a single node, for example when you want
multiple papers in a series to share the same note, or an article has a citation
key and a URL at the same time.
</p>
<p>Org-roam also provides some functions to add or remove refs.
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-ref-add ref
<p>Add REF to the node at point. When called interactively, prompt for the
ref to add.
</p>
</li><li>Function: org-roam-ref-remove
<p>Remove a ref from the node at point.
</p></li></ul>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Citations">
<div class="nav-panel">
<p>
Next: <a href="#Completion" accesskey="n" rel="next">Completion</a>, Previous: <a href="#Node-Properties" accesskey="p" rel="prev">Node Properties</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Citations-1"><span>9 Citations<a class="copiable-link" href="#Citations-1"> &para;</a></span></h2>
<p>Since version 9.5, Org has first-class support for citations. Org-roam supports
the caching of both these in-built citations (of form <code class="code">[cite:@key]</code>) and <a class="uref" href="https://github.com/jkitchin/org-ref">org-ref</a>
citations (of form cite:key).
</p>
<p>Org-roam attempts to load both the <code class="code">org-ref</code> and <code class="code">org-cite</code> package when
indexing files, so no further setup from the user is required for citation
support.
</p>
<ul class="mini-toc">
<li><a href="#Using-the-Cached-Information" accesskey="1">Using the Cached Information</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Using-the-Cached-Information">
<div class="nav-panel">
<p>
Up: <a href="#Citations" accesskey="u" rel="up">Citations</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Using-the-Cached-Information-1"><span>9.1 Using the Cached Information<a class="copiable-link" href="#Using-the-Cached-Information-1"> &para;</a></span></h3>
<p>It is common to use take reference notes for academic papers. To designate the
node to be the canonical node for the academic paper, we can use its unique
citation key:
</p>
<div class="example">
<pre class="example-preformatted">* Probabilistic Robotics
:PROPERTIES:
:ID: 51b7b82c-bbb4-4822-875a-ed548cffda10
:ROAM_REFS: @thrun2005probabilistic
:END:
</pre></div>
<p>or
</p>
<div class="example">
<pre class="example-preformatted">* Probabilistic Robotics
:PROPERTIES:
:ID: 51b7b82c-bbb4-4822-875a-ed548cffda10
:ROAM_REFS: [cite:@thrun2005probabilistic]
:END:
</pre></div>
<p>for <code class="code">org-cite</code>, or:
</p>
<div class="example">
<pre class="example-preformatted">* Probabilistic Robotics
:PROPERTIES:
:ID: 51b7b82c-bbb4-4822-875a-ed548cffda10
:ROAM_REFS: cite:thrun2005probabilistic
:END:
</pre></div>
<p>for <code class="code">org-ref</code>.
</p>
<p>When another node has a citation for that key, we can see it using the
<code class="code">Reflinks</code> section of the Org-roam buffer.
</p>
<p>Extension developers may be interested in retrieving the citations within their
notes. This information can be found within the <code class="code">citation</code> table of the Org-roam
database.
</p>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Completion">
<div class="nav-panel">
<p>
Next: <a href="#Encryption" accesskey="n" rel="next">Encryption</a>, Previous: <a href="#Citations" accesskey="p" rel="prev">Citations</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Completion-1"><span>10 Completion<a class="copiable-link" href="#Completion-1"> &para;</a></span></h2>
<p>Completions for Org-roam are provided via <code class="code">completion-at-point</code>. Org-roam
currently provides completions in two scenarios:
</p>
<ul class="itemize mark-bullet">
<li>When within an Org bracket link
</li><li>Anywhere
</li></ul>
<p>Completions are installed locally in all Org-roam files. To trigger completions,
call <code class="code">M-x completion-at-point</code>. If using <code class="code">company-mode</code>, add <code class="code">company-capf</code> to
<code class="code">company-backends</code>.
</p>
<p>Completions respect <code class="code">completion-styles</code>: the user is free to choose how
candidates are matched. An example of a completion style that has grown in
popularity is <a class="uref" href="https://github.com/oantolin/orderless">orderless</a>.
</p>
<ul class="mini-toc">
<li><a href="#Completing-within-Link-Brackets" accesskey="1">Completing within Link Brackets</a></li>
<li><a href="#Completing-anywhere" accesskey="2">Completing anywhere</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Completing-within-Link-Brackets">
<div class="nav-panel">
<p>
Next: <a href="#Completing-anywhere" accesskey="n" rel="next">Completing anywhere</a>, Up: <a href="#Completion" accesskey="u" rel="up">Completion</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Completing-within-Link-Brackets-1"><span>10.1 Completing within Link Brackets<a class="copiable-link" href="#Completing-within-Link-Brackets-1"> &para;</a></span></h3>
<p>Completions within link brackets are provided by
<code class="code">org-roam-complete-link-at-point</code>.
</p>
<p>The completion candidates are the titles and aliases for all Org-roam nodes.
Upon choosing a candidate, a <code class="code">roam:Title</code> link will be inserted, linking to node
of choice.
</p>
<hr>
</div>
<div class="section-level-extent" id="Completing-anywhere">
<div class="nav-panel">
<p>
Previous: <a href="#Completing-within-Link-Brackets" accesskey="p" rel="prev">Completing within Link Brackets</a>, Up: <a href="#Completion" accesskey="u" rel="up">Completion</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Completing-anywhere-1"><span>10.2 Completing anywhere<a class="copiable-link" href="#Completing-anywhere-1"> &para;</a></span></h3>
<p>The same completions can be triggered anywhere for the symbol at point if not
within a bracketed link. This is provided by <code class="code">org-roam-complete-everywhere</code>.
Similarly, the completion candidates are the titles and aliases for all Org-roam
nodes, and upon choosing a candidate a <code class="code">roam:Title</code> link will be inserted
linking to the node of choice.
</p>
<p>This is disabled by default. To enable it, set <code class="code">org-roam-completion-everywhere</code>
to <code class="code">t</code>:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-completion-everywhere t)
</pre></div>
<ul class="itemize mark-bullet">
<li>Variable: org-roam-completion-everywhere
</li></ul>
<p>When non-nil, provide link completion matching outside of Org links.
</p>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Encryption">
<div class="nav-panel">
<p>
Next: <a href="#The-Templating-System" accesskey="n" rel="next">The Templating System</a>, Previous: <a href="#Completion" accesskey="p" rel="prev">Completion</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Encryption-1"><span>11 Encryption<a class="copiable-link" href="#Encryption-1"> &para;</a></span></h2>
<p>Emacs has support for creating and editing encrypted gpg files, and Org-roam need
not provide additional tooling. To create encrypted files, simply add the <code class="code">.gpg</code>
extension in your Org-roam capture templates. For example:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-capture-templates '((&quot;d&quot; &quot;default&quot; plain &quot;%?&quot;
:target (file+head &quot;${slug}.org.gpg&quot;
&quot;#+title: ${title}\n&quot;)
:unnarrowed t)))
</pre></div>
<p>Note that the Org-roam database stores metadata information in plain-text
(headline text, for example), so if this information is private to you then you
should also ensure the database is encrypted.
</p>
<hr>
</div>
<div class="chapter-level-extent" id="The-Templating-System">
<div class="nav-panel">
<p>
Next: <a href="#Extensions" accesskey="n" rel="next">Extensions</a>, Previous: <a href="#Encryption" accesskey="p" rel="prev">Encryption</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="The-Templating-System-1"><span>12 The Templating System<a class="copiable-link" href="#The-Templating-System-1"> &para;</a></span></h2>
<p>Org-roam extends the <code class="code">org-capture</code> system, providing a smoother note-taking
experience. However, these extensions mean Org-roam capture templates are
incompatible with <code class="code">org-capture</code> templates.
</p>
<p>Org-roam&rsquo;s templates are specified by <code class="code">org-roam-capture-templates</code>. Just like
<code class="code">org-capture-templates</code>, <code class="code">org-roam-capture-templates</code> can contain multiple
templates. If <code class="code">org-roam-capture-templates</code> only contains one template, there
will be no prompt for template selection.
</p>
<ul class="mini-toc">
<li><a href="#Template-Walkthrough" accesskey="1">Template Walkthrough</a></li>
<li><a href="#Org_002droam-Template-Expansion" accesskey="2">Org-roam Template Expansion</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Template-Walkthrough">
<div class="nav-panel">
<p>
Next: <a href="#Org_002droam-Template-Expansion" accesskey="n" rel="next">Org-roam Template Expansion</a>, Up: <a href="#The-Templating-System" accesskey="u" rel="up">The Templating System</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Template-Walkthrough-1"><span>12.1 Template Walkthrough<a class="copiable-link" href="#Template-Walkthrough-1"> &para;</a></span></h3>
<p>To demonstrate the additions made to org-capture templates. Here, we explain
the default template, reproduced below. You will find most of the elements
of the template are similar to <code class="code">org-capture</code> templates.
</p>
<div class="example lisp">
<pre class="lisp-preformatted">((&quot;d&quot; &quot;default&quot; plain &quot;%?&quot;
:target (file+head &quot;%&lt;%Y%m%d%H%M%S&gt;-${slug}.org&quot;
&quot;#+title: ${title}\n&quot;)
:unnarrowed t))
</pre></div>
<ol class="enumerate">
<li> The template has short key <code class="code">&quot;d&quot;</code>. If you have only one template, org-roam
automatically chooses this template for you.
</li><li> The template is given a description of <code class="code">&quot;default&quot;</code>.
</li><li> <code class="code">plain</code> text is inserted. Other options include Org headings via
<code class="code">entry</code>.
</li><li> Notice that the <code class="code">target</code> that&rsquo;s usually in Org-capture templates is missing
here.
</li><li> <code class="code">&quot;%?&quot;</code> is the template inserted on each call to <code class="code">org-roam-capture-</code>.
This template means don&rsquo;t insert any content, but place the cursor here.
</li><li> <code class="code">:target</code> is a compulsory specification in the Org-roam capture template. The
first element of the list indicates the type of the target, the second
element indicates the location of the captured node, and the rest of the
elements indicate prefilled template that will be inserted and the position
of the point will be adjusted for. The latter behavior varies from type to
type of the capture target.
</li><li> <code class="code">:unnarrowed t</code> tells org-capture to show the contents for the whole file,
rather than narrowing to just the entry. This is part of the Org-capture
templates.
</li></ol>
<p>See the <code class="code">org-roam-capture-templates</code> documentation for more details and
customization options.
</p>
<hr>
</div>
<div class="section-level-extent" id="Org_002droam-Template-Expansion">
<div class="nav-panel">
<p>
Previous: <a href="#Template-Walkthrough" accesskey="p" rel="prev">Template Walkthrough</a>, Up: <a href="#The-Templating-System" accesskey="u" rel="up">The Templating System</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Org_002droam-Template-Expansion-1"><span>12.2 Org-roam Template Expansion<a class="copiable-link" href="#Org_002droam-Template-Expansion-1"> &para;</a></span></h3>
<p>Org-roam&rsquo;s template definitions also extend org-capture&rsquo;s template syntax, to
allow prefilling of strings. We have seen a glimpse of this in <a class="ref" href="#Template-Walkthrough">Template
Walkthrough</a>.
</p>
<p>Org-roam provides the <code class="code">${foo}</code> syntax for substituting variables with known
strings. <code class="code">${foo}</code>&rsquo;s substitution is performed as follows:
</p>
<ol class="enumerate">
<li> If <code class="code">foo</code> is a function, <code class="code">foo</code> is called with the current node as its
argument.
</li><li> Else if <code class="code">org-roam-node-foo</code> is a function, <code class="code">foo</code> is called with the current node
as its argument. The <code class="code">org-roam-node-</code> prefix defines many of Org-roam&rsquo;s node
accessors such as <code class="code">org-roam-node-title</code> and <code class="code">org-roam-node-level</code>.
</li><li> Else look up <code class="code">org-roam-capture--info</code> for <code class="code">foo</code>. This is an internal variable
that is set before the capture process begins.
</li><li> If none of the above applies, read a string using <code class="code">completing-read</code>.
<ol class="enumerate">
<li> Org-roam also provides the <code class="code">${foo=default_val}</code> syntax, where if a default
value is provided, will be the initial value for the <code class="code">foo</code> key during
minibuffer completion.
</li></ol>
</li></ol>
<p>One can check the list of available keys for nodes by inspecting the
<code class="code">org-roam-node</code> struct. At the time of writing, it is:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(cl-defstruct (org-roam-node (:constructor org-roam-node-create)
(:copier nil))
&quot;A heading or top level file with an assigned ID property.&quot;
file file-hash file-atime file-mtime
id level point todo priority scheduled deadline title properties olp
tags aliases refs)
</pre></div>
<p>This makes <code class="code">${file}</code>, <code class="code">${file-hash}</code> etc. all valid substitutions.
</p>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Extensions">
<div class="nav-panel">
<p>
Next: <a href="#Performance-Optimization" accesskey="n" rel="next">Performance Optimization</a>, Previous: <a href="#The-Templating-System" accesskey="p" rel="prev">The Templating System</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Extensions-1"><span>13 Extensions<a class="copiable-link" href="#Extensions-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#org_002droam_002dprotocol" accesskey="1">org-roam-protocol</a></li>
<li><a href="#org_002droam_002dgraph" accesskey="2">org-roam-graph</a></li>
<li><a href="#org_002droam_002ddailies" accesskey="3">org-roam-dailies</a></li>
<li><a href="#org_002droam_002dexport" accesskey="4">org-roam-export</a></li>
</ul>
<hr>
<div class="section-level-extent" id="org_002droam_002dprotocol">
<div class="nav-panel">
<p>
Next: <a href="#org_002droam_002dgraph" accesskey="n" rel="next">org-roam-graph</a>, Up: <a href="#Extensions" accesskey="u" rel="up">Extensions</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="org_002droam_002dprotocol-1"><span>13.1 org-roam-protocol<a class="copiable-link" href="#org_002droam_002dprotocol-1"> &para;</a></span></h3>
<p>Org-roam provides extensions for capturing content from external applications
such as the browser, via <code class="code">org-protocol</code>. Org-roam extends <code class="code">org-protocol</code> with 2
protocols: the <code class="code">roam-node</code> and <code class="code">roam-ref</code> protocols.
</p>
<ul class="mini-toc">
<li><a href="#Installation-_00281_0029" accesskey="1">Installation</a></li>
<li><a href="#The-roam_002dnode-protocol" accesskey="2">The roam-node protocol</a></li>
<li><a href="#The-roam_002dref-protocol" accesskey="3">The roam-ref protocol</a></li>
</ul>
<hr>
<div class="subsection-level-extent" id="Installation-_00281_0029">
<div class="nav-panel">
<p>
Next: <a href="#The-roam_002dnode-protocol" accesskey="n" rel="next">The roam-node protocol</a>, Up: <a href="#org_002droam_002dprotocol" accesskey="u" rel="up">org-roam-protocol</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Installation-2"><span>13.1.1 Installation<a class="copiable-link" href="#Installation-2"> &para;</a></span></h4>
<p>To enable Org-roam&rsquo;s protocol extensions, simply add the following to your init
file:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(require 'org-roam-protocol)
</pre></div>
<p>We also need to set up <code class="code">org-protocol</code>: the instructions for setting up
<code class="code">org-protocol</code> are reproduced here.
</p>
<p>On a high-level, external calls are passed to Emacs via <code class="code">emacsclient</code>.
<code class="code">org-protocol</code> intercepts these and runs custom actions based on the protocols
registered. Hence, to use <code class="code">org-protocol</code>, once must:
</p>
<ol class="enumerate">
<li> launch the <code class="code">emacsclient</code> process
</li><li> Register <code class="code">org-protocol://</code> as a valid scheme-handler
</li></ol>
<p>The instructions for the latter for each operating system is detailed below.
</p>
<ul class="mini-toc">
<li><a href="#Linux" accesskey="1">Linux</a></li>
<li><a href="#Mac-OS" accesskey="2">Mac OS</a></li>
<li><a href="#Windows" accesskey="3">Windows</a></li>
</ul>
<hr>
<div class="unnumberedsubsubsec-level-extent" id="Linux">
<div class="nav-panel">
<p>
Next: <a href="#Mac-OS" accesskey="n" rel="next">Mac OS</a>, Up: <a href="#Installation-_00281_0029" accesskey="u" rel="up">Installation</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="unnumberedsubsubsec" id="Linux-1"><span>Linux<a class="copiable-link" href="#Linux-1"> &para;</a></span></h4>
<p>For Linux users, create a desktop application in
<code class="code">~/.local/share/applications/org-protocol.desktop</code>:
</p>
<div class="example">
<pre class="example-preformatted">[Desktop Entry]
Name=Org-Protocol
Exec=emacsclient %u
Icon=emacs-icon
Type=Application
Terminal=false
MimeType=x-scheme-handler/org-protocol
</pre></div>
<p>Associate <code class="code">org-protocol://</code> links with the desktop application by
running in your shell:
</p>
<div class="example">
<pre class="example-preformatted">xdg-mime default org-protocol.desktop x-scheme-handler/org-protocol
</pre></div>
<p>To disable the &ldquo;confirm&rdquo; prompt in Chrome, you can also make Chrome show a
checkbox to tick, so that the <code class="code">Org-Protocol Client</code> app will be used without
confirmation. To do this, run in a shell:
</p>
<div class="example">
<pre class="example-preformatted">sudo mkdir -p /etc/opt/chrome/policies/managed/
sudo tee /etc/opt/chrome/policies/managed/external_protocol_dialog.json &gt;/dev/null &lt;&lt;'EOF'
{
&quot;ExternalProtocolDialogShowAlwaysOpenCheckbox&quot;: true
}
EOF
sudo chmod 644 /etc/opt/chrome/policies/managed/external_protocol_dialog.json
</pre></div>
<p>and then restart Chrome (for example, by navigating to &lt;chrome://restart&gt;) to
make the new policy take effect.
</p>
<p>See <a class="uref" href="https://www.chromium.org/administrators/linux-quick-start">here</a> for more info on the <code class="code">/etc/opt/chrome/policies/managed</code> directory and
<a class="uref" href="https://cloud.google.com/docs/chrome-enterprise/policies/?policy=ExternalProtocolDialogShowAlwaysOpenCheckbox">here</a> for information on the <code class="code">ExternalProtocolDialogShowAlwaysOpenCheckbox</code> policy.
</p>
<hr>
</div>
<div class="unnumberedsubsubsec-level-extent" id="Mac-OS">
<div class="nav-panel">
<p>
Next: <a href="#Windows" accesskey="n" rel="next">Windows</a>, Previous: <a href="#Linux" accesskey="p" rel="prev">Linux</a>, Up: <a href="#Installation-_00281_0029" accesskey="u" rel="up">Installation</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="unnumberedsubsubsec" id="Mac-OS-1"><span>Mac OS<a class="copiable-link" href="#Mac-OS-1"> &para;</a></span></h4>
<p>For Mac OS, we need to create our own application.
</p>
<ol class="enumerate">
<li> Launch Script Editor
</li><li> Use the following script, paying attention to the path to <code class="code">emacsclient</code>:
</li></ol>
<div class="example lisp">
<pre class="lisp-preformatted">on open location this_URL
set EC to &quot;/usr/local/bin/emacsclient --no-wait &quot;
set filePath to quoted form of this_URL
do shell script EC &amp; filePath &amp; &quot; &amp;&gt; /dev/null &amp;&quot;
tell application &quot;Emacs&quot; to activate
end open location
</pre></div>
<ol class="enumerate">
<li> Save the script in <code class="code">/Applications/OrgProtocolClient.app</code>, changing the script type to
&ldquo;Application&rdquo;, rather than &ldquo;Script&rdquo;.
</li><li> Edit <code class="code">/Applications/OrgProtocolClient.app/Contents/Info.plist</code>, adding the
following before the last <code class="code">&lt;/dict&gt;</code> tag:
</li></ol>
<div class="example">
<pre class="example-preformatted">&lt;key&gt;CFBundleURLTypes&lt;/key&gt;
&lt;array&gt;
&lt;dict&gt;
&lt;key&gt;CFBundleURLName&lt;/key&gt;
&lt;string&gt;org-protocol handler&lt;/string&gt;
&lt;key&gt;CFBundleURLSchemes&lt;/key&gt;
&lt;array&gt;
&lt;string&gt;org-protocol&lt;/string&gt;
&lt;/array&gt;
&lt;/dict&gt;
&lt;/array&gt;
</pre></div>
<ol class="enumerate">
<li> Save the file, and run the <code class="code">OrgProtocolClient.app</code> to register the protocol.
</li></ol>
<p>To disable the &ldquo;confirm&rdquo; prompt in Chrome, you can also make Chrome
show a checkbox to tick, so that the <code class="code">OrgProtocol</code> app will be used
without confirmation. To do this, run in a shell:
</p>
<div class="example">
<pre class="example-preformatted">defaults write com.google.Chrome ExternalProtocolDialogShowAlwaysOpenCheckbox -bool true
</pre></div>
<p>If you&rsquo;re using <a class="uref" href="https://github.com/railwaycat/homebrew-emacsmacport">Emacs Mac Port</a>, it registered its &lsquo;Emacs.app&lsquo; as the default
handler for the URL scheme &lsquo;org-protocol&lsquo;. To make <code class="code">OrgProtocol.app</code>
the default handler instead, run:
</p>
<div class="example">
<pre class="example-preformatted">defaults write com.apple.LaunchServices/com.apple.launchservices.secure LSHandlers -array-add \
'{&quot;LSHandlerPreferredVersions&quot; = { &quot;LSHandlerRoleAll&quot; = &quot;-&quot;; }; LSHandlerRoleAll = &quot;org.yourusername.OrgProtocol&quot;; LSHandlerURLScheme = &quot;org-protocol&quot;;}'
</pre></div>
<p>Then restart your computer.
</p>
<p>If you&rsquo;re using the <a class="uref" href="https://formulae.brew.sh/formula/emacs">Emacs Homebrew formula</a>, you may need one of the following additional configurations:
</p>
<ol class="enumerate">
<li> Add option &lsquo;-c&lsquo; to &lsquo;emacsclient&lsquo; in the script, and start emacs from command line with &lsquo;emacs &ndash;daemon&lsquo;
</li></ol>
<div class="example lisp">
<pre class="lisp-preformatted">on open location this_URL
set EC to &quot;/usr/local/bin/emacsclient -c --no-wait &quot;
set filePath to quoted form of this_URL
do shell script EC &amp; filePath &amp; &quot; &amp;&gt; /dev/null &amp;&quot;
tell application &quot;Emacs&quot; to activate
end open location
</pre></div>
<ol class="enumerate">
<li> Add &lsquo;(server-start)&lsquo; in .emacs (in this case you do not need option &lsquo;-c&lsquo; for &lsquo;emacsclient&lsquo; in the script, and you do not need to start emacs with &lsquo;emacs &ndash;daemon&lsquo;
</li></ol>
<ul class="itemize mark-bullet">
<li><a class="anchor" id="Testing-org_002dprotocol"></a>Testing org-protocol
<p>To test that you have the handler setup and registered properly from the command
line you can run:
</p>
<div class="example">
<pre class="example-preformatted">open org-protocol://roam-ref\?template=r\&amp;ref=test\&amp;title=this
</pre></div>
<p>If you get an error similar too this or the wrong handler is run:
</p>
<blockquote class="quotation">
<p>No application knows how to open URL org-protocol://roam-ref?template=r&amp;ref=test&amp;title=this (Error Domain=NSOSStatusErrorDomain Code=-10814 &ldquo;kLSApplicationNotFoundErr: E.g. no application claims the file&rdquo; UserInfo={<em class="math">_LSLine</em>=1489, _LSFunction=runEvaluator}).
</p>
</blockquote>
<p>You may need to manually register your handler, like this:
</p>
<div class="example">
<pre class="example-preformatted">/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/Support/lsregister -R -f /Applications/OrgProtocolClient.app
</pre></div>
<p>Here is a link to the lsregister command that is really useful: <a class="uref" href="https://eclecticlight.co/2019/03/25/lsregister-a-valuable-undocumented-command-for-launchservices/">https://eclecticlight.co/2019/03/25/lsregister-a-valuable-undocumented-command-for-launchservices/</a>
</p></li></ul>
<hr>
</div>
<div class="unnumberedsubsubsec-level-extent" id="Windows">
<div class="nav-panel">
<p>
Previous: <a href="#Mac-OS" accesskey="p" rel="prev">Mac OS</a>, Up: <a href="#Installation-_00281_0029" accesskey="u" rel="up">Installation</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="unnumberedsubsubsec" id="Windows-1"><span>Windows<a class="copiable-link" href="#Windows-1"> &para;</a></span></h4>
<p>For Windows, create a temporary <code class="code">org-protocol.reg</code> file:
</p>
<div class="example">
<pre class="example-preformatted">REGEDIT4
[HKEY_CLASSES_ROOT\org-protocol]
@=&quot;URL:Org Protocol&quot;
&quot;URL Protocol&quot;=&quot;&quot;
[HKEY_CLASSES_ROOT\org-protocol\shell]
[HKEY_CLASSES_ROOT\org-protocol\shell\open]
[HKEY_CLASSES_ROOT\org-protocol\shell\open\command]
@=&quot;\&quot;C:\\Windows\\System32\\wsl.exe\&quot; emacsclient \&quot;%1\&quot;&quot;
</pre></div>
<p>The above will forward the protocol to WSL. If you run Emacs natively on
Windows, replace the last line with:
</p>
<div class="example">
<pre class="example-preformatted">@=&quot;\&quot;c:\\path\\to\\emacs\\bin\\emacsclientw.exe\&quot; \&quot;%1\&quot;&quot;
</pre></div>
<p>After executing the .reg file, the protocol is registered and you can delete the
file.
</p>
<hr>
</div>
</div>
<div class="subsection-level-extent" id="The-roam_002dnode-protocol">
<div class="nav-panel">
<p>
Next: <a href="#The-roam_002dref-protocol" accesskey="n" rel="next">The roam-ref protocol</a>, Previous: <a href="#Installation-_00281_0029" accesskey="p" rel="prev">Installation</a>, Up: <a href="#org_002droam_002dprotocol" accesskey="u" rel="up">org-roam-protocol</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="The-roam_002dnode-protocol-1"><span>13.1.2 The roam-node protocol<a class="copiable-link" href="#The-roam_002dnode-protocol-1"> &para;</a></span></h4>
<p>The roam-node protocol opens the node with ID specified by the <code class="code">node</code> key (e.g.
<code class="code">org-protocol://roam-node?node=node-id</code>). <code class="code">org-roam-graph</code> uses this to make the
graph navigable.
</p>
<hr>
</div>
<div class="subsection-level-extent" id="The-roam_002dref-protocol">
<div class="nav-panel">
<p>
Previous: <a href="#The-roam_002dnode-protocol" accesskey="p" rel="prev">The roam-node protocol</a>, Up: <a href="#org_002droam_002dprotocol" accesskey="u" rel="up">org-roam-protocol</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="The-roam_002dref-protocol-1"><span>13.1.3 The roam-ref protocol<a class="copiable-link" href="#The-roam_002dref-protocol-1"> &para;</a></span></h4>
<p>This protocol finds or creates a new note with a given <code class="code">ROAM_REFS</code>:
</p>
<img class="image" src="images/roam-ref.gif" alt="images/roam-ref">
<p>To use this, create the following <a class="uref" href="https://en.wikipedia.org/wiki/Bookmarklet">bookmarklet</a> in your browser:
</p>
<div class="example">
<pre class="example-preformatted">javascript:location.href =
'org-protocol://roam-ref?template=r&amp;ref='
+ encodeURIComponent(location.href)
+ '&amp;title='
+ encodeURIComponent(document.title)
+ '&amp;body='
+ encodeURIComponent(window.getSelection())
</pre></div>
<p>or as a keybinding in <code class="code">qutebrowser</code> in , using the <code class="code">config.py</code> file (see
<a class="uref" href="https://github.com/qutebrowser/qutebrowser/blob/master/doc/help/configuring.asciidoc">Configuring qutebrowser</a>):
</p>
<div class="example">
<pre class="example-preformatted">config.bind(&quot;&lt;Ctrl-r&gt;&quot;, &quot;open javascript:location.href='org-protocol://roam-ref?template=r&amp;ref='+encodeURIComponent(location.href)+'&amp;title='+encodeURIComponent(document.title)&quot;)
</pre></div>
<p>where <code class="code">template</code> is the template key for a template in
<code class="code">org-roam-capture-ref-templates</code> (see <a class="ref" href="#The-Templating-System">The Templating System</a>).
</p>
<hr>
</div>
</div>
<div class="section-level-extent" id="org_002droam_002dgraph">
<div class="nav-panel">
<p>
Next: <a href="#org_002droam_002ddailies" accesskey="n" rel="next">org-roam-dailies</a>, Previous: <a href="#org_002droam_002dprotocol" accesskey="p" rel="prev">org-roam-protocol</a>, Up: <a href="#Extensions" accesskey="u" rel="up">Extensions</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="org_002droam_002dgraph-1"><span>13.2 org-roam-graph<a class="copiable-link" href="#org_002droam_002dgraph-1"> &para;</a></span></h3>
<p>Org-roam provides basic graphing capabilities to explore interconnections
between notes, in <code class="code">org-roam-graph</code>. This is done by performing SQL queries and
generating images using <a class="uref" href="https://graphviz.org/">Graphviz</a>. The graph can also be navigated: see <a class="ref" href="#org_002droam_002dprotocol">org-roam-protocol</a>.
</p>
<p>The entry point to graph creation is <code class="code">org-roam-graph</code>.
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-graph &amp; optional arg node
</li></ul>
<p>Build and display a graph for NODE.
ARG may be any of the following values:
</p>
<ul class="itemize mark-bullet">
<li><code class="code">nil</code> show the full graph.
</li><li><code class="code">integer</code> an integer argument <code class="code">N</code> will show the graph for the connected
components to node up to <code class="code">N</code> steps away.
</li></ul>
<ul class="itemize mark-bullet">
<li>User Option: org-roam-graph-executable
<p>Path to the graphing executable (in this case, Graphviz). Set this if Org-roam
is unable to find the Graphviz executable on your system.
</p>
<p>You may also choose to use <code class="code">neato</code> in place of <code class="code">dot</code>, which generates a more
compact graph layout.
</p>
</li><li>User Option: org-roam-graph-viewer
<p>Org-roam defaults to using Firefox (located on PATH) to view the SVG, but you
may choose to set it to:
</p>
<ol class="enumerate">
<li> A string, which is a path to the program used
</li><li> a function accepting a single argument: the graph file path.
</li></ol>
<p><code class="code">nil</code> uses <code class="code">view-file</code> to view the graph.
</p>
<p>If you are using WSL2 and would like to open the graph in Windows, you can use
the second option to set the browser and network file path:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-graph-viewer
(lambda (file)
(let ((org-roam-graph-viewer &quot;/mnt/c/Program Files/Mozilla Firefox/firefox.exe&quot;))
(org-roam-graph--open (concat &quot;file://///wsl$/Ubuntu&quot; file)))))
</pre></div>
</li></ul>
<ul class="mini-toc">
<li><a href="#Graph-Options" accesskey="1">Graph Options</a></li>
</ul>
<hr>
<div class="subsection-level-extent" id="Graph-Options">
<div class="nav-panel">
<p>
Up: <a href="#org_002droam_002dgraph" accesskey="u" rel="up">org-roam-graph</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Graph-Options-1"><span>13.2.1 Graph Options<a class="copiable-link" href="#Graph-Options-1"> &para;</a></span></h4>
<p>Graphviz provides many options for customizing the graph output, and Org-roam
supports some of them. See <a class="uref" href="https://graphviz.gitlab.io/_pages/doc/info/attrs.html">https://graphviz.gitlab.io/_pages/doc/info/attrs.html</a>
for customizable options.
</p>
<ul class="itemize mark-bullet">
<li>User Option: org-roam-graph-filetype
<p>The file type to generate for graphs. This defaults to <code class="code">&quot;svg&quot;</code>.
</p>
</li><li>User Option: org-roam-graph-extra-config
<p>Extra options passed to graphviz for the digraph (The &ldquo;G&rdquo; attributes).
Example: <code class="code">'~((&quot;rankdir&quot; . &quot;LR&quot;))</code>
</p>
</li><li>User Option: org-roam-graph-node-extra-config
<p>An alist of options to style the nodes.
The car of the alist node type such as <code class="code">&quot;id&quot;</code>, or <code class="code">&quot;http&quot;</code>. The cdr of the
list is another alist of Graphviz node options (the &ldquo;N&rdquo; attributes).
</p>
</li><li>User Option: org-roam-graph-edge-extra-config
<p>Extra options for edges in the graphviz output (The &ldquo;E&rdquo; attributes).
Example: <code class="code">'((&quot;dir&quot; . &quot;back&quot;))</code>
</p></li></ul>
<hr>
</div>
</div>
<div class="section-level-extent" id="org_002droam_002ddailies">
<div class="nav-panel">
<p>
Next: <a href="#org_002droam_002dexport" accesskey="n" rel="next">org-roam-export</a>, Previous: <a href="#org_002droam_002dgraph" accesskey="p" rel="prev">org-roam-graph</a>, Up: <a href="#Extensions" accesskey="u" rel="up">Extensions</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="org_002droam_002ddailies-1"><span>13.3 org-roam-dailies<a class="copiable-link" href="#org_002droam_002ddailies-1"> &para;</a></span></h3>
<p>Org-roam provides journaling capabilities akin to
Org-journal with <code class="code">org-roam-dailies</code>.
</p>
<ul class="mini-toc">
<li><a href="#Configuration" accesskey="1">Configuration</a></li>
<li><a href="#Usage" accesskey="2">Usage</a></li>
</ul>
<hr>
<div class="subsection-level-extent" id="Configuration">
<div class="nav-panel">
<p>
Next: <a href="#Usage" accesskey="n" rel="next">Usage</a>, Up: <a href="#org_002droam_002ddailies" accesskey="u" rel="up">org-roam-dailies</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Configuration-1"><span>13.3.1 Configuration<a class="copiable-link" href="#Configuration-1"> &para;</a></span></h4>
<p>For <code class="code">org-roam-dailies</code> to work, you need to define two variables:
</p>
<ul class="itemize mark-bullet">
<li>Variable: <code class="code">org-roam-dailies-directory</code>
<p>Path to daily-notes. This path is relative to <code class="code">org-roam-directory</code>.
</p>
</li><li>Variable: <code class="code">org-roam-dailies-capture-templates</code>
<p>Capture templates for daily-notes in Org-roam.
</p></li></ul>
<p>Here is a sane default configuration:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-dailies-directory &quot;daily/&quot;)
(setq org-roam-dailies-capture-templates
'((&quot;d&quot; &quot;default&quot; entry
&quot;* %?&quot;
:target (file+head &quot;%&lt;%Y-%m-%d&gt;.org&quot;
&quot;#+title: %&lt;%Y-%m-%d&gt;\n&quot;))))
</pre></div>
<p>See <a class="ref" href="#The-Templating-System">The Templating System</a> for creating new templates.
</p>
<hr>
</div>
<div class="subsection-level-extent" id="Usage">
<div class="nav-panel">
<p>
Previous: <a href="#Configuration" accesskey="p" rel="prev">Configuration</a>, Up: <a href="#org_002droam_002ddailies" accesskey="u" rel="up">org-roam-dailies</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Usage-1"><span>13.3.2 Usage<a class="copiable-link" href="#Usage-1"> &para;</a></span></h4>
<p><code class="code">org-roam-dailies</code> provides these interactive functions:
</p>
<ul class="itemize mark-bullet">
<li>Function: <code class="code">org-roam-dailies-capture-today</code> &amp;optional goto
<p>Create an entry in the daily note for today.
</p>
<p>When <code class="code">goto</code> is non-nil, go to the note without creating an entry.
</p>
</li><li>Function: <code class="code">org-roam-dailies-goto-today</code>
<p>Find the daily note for today, creating it if necessary.
</p></li></ul>
<p>There are variants of those commands for <code class="code">-yesterday</code> and <code class="code">-tomorrow</code>:
</p>
<ul class="itemize mark-bullet">
<li>Function: <code class="code">org-roam-dailies-capture-yesterday</code> n &amp;optional goto
<p>Create an entry in the daily note for yesterday.
</p>
<p>With numeric argument <code class="code">n</code>, use the daily note <code class="code">n</code> days in the past.
</p>
</li><li>Function: <code class="code">org-roam-dailies-goto-yesterday</code>
<p>With numeric argument N, use the daily-note N days in the future.
</p></li></ul>
<p>There are also commands which allow you to use Emacss <code class="code">calendar</code> to find the date
</p>
<ul class="itemize mark-bullet">
<li>Function: <code class="code">org-roam-dailies-capture-date</code>
<p>Create an entry in the daily note for a date using the calendar.
</p>
<p>Prefer past dates, unless <code class="code">prefer-future</code> is non-nil.
</p>
<p>With a &rsquo;C-u&rsquo; prefix or when <code class="code">goto</code> is non-nil, go the note without
creating an entry.
</p>
</li><li>Function: <code class="code">org-roam-dailies-goto-date</code>
<p>Find the daily note for a date using the calendar, creating it if necessary.
</p>
<p>Prefer past dates, unless <code class="code">prefer-future</code> is non-nil.
</p>
</li><li>Function: <code class="code">org-roam-dailies-find-directory</code>
<p>Find and open <code class="code">org-roam-dailies-directory</code>.
</p>
</li><li>Function: <code class="code">org-roam-dailies-goto-previous-note</code>
<p>When in an daily-note, find the previous one.
</p>
</li><li>Function: <code class="code">org-roam-dailies-goto-next-note</code>
<p>When in an daily-note, find the next one.
</p></li></ul>
<hr>
</div>
</div>
<div class="section-level-extent" id="org_002droam_002dexport">
<div class="nav-panel">
<p>
Previous: <a href="#org_002droam_002ddailies" accesskey="p" rel="prev">org-roam-dailies</a>, Up: <a href="#Extensions" accesskey="u" rel="up">Extensions</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="org_002droam_002dexport-1"><span>13.4 org-roam-export<a class="copiable-link" href="#org_002droam_002dexport-1"> &para;</a></span></h3>
<p>Because Org-roam files are plain org files, they can be exported easily using
<code class="code">org-export</code> to a variety of formats, including <code class="code">html</code> and <code class="code">pdf</code>. However,
Org-roam relies heavily on ID links, which Org&rsquo;s html export has poor support
of. To fix this, Org-roam provides a bunch of overrides to better support
export. To use them, simply run:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(require 'org-roam-export)
</pre></div>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="Performance-Optimization">
<div class="nav-panel">
<p>
Next: <a href="#The-Org_002dmode-Ecosystem" accesskey="n" rel="next">The Org-mode Ecosystem</a>, Previous: <a href="#Extensions" accesskey="p" rel="prev">Extensions</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Performance-Optimization-1"><span>14 Performance Optimization<a class="copiable-link" href="#Performance-Optimization-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#Garbage-Collection" accesskey="1">Garbage Collection</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Garbage-Collection">
<div class="nav-panel">
<p>
Up: <a href="#Performance-Optimization" accesskey="u" rel="up">Performance Optimization</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Garbage-Collection-1"><span>14.1 Garbage Collection<a class="copiable-link" href="#Garbage-Collection-1"> &para;</a></span></h3>
<p>During the cache-build process, Org-roam generates a lot of in-memory
data-structures (such as the Org file&rsquo;s AST), which are discarded after use.
These structures are garbage collected at regular intervals (see <a data-manual="elisp" href="https://www.gnu.org/software/emacs/manual/html_mono/elisp.html#Garbage-Collection">info:elisp#Garbage Collection</a>).
</p>
<p>Org-roam provides the option <code class="code">org-roam-db-gc-threshold</code> to temporarily change
the threshold value for GC to be triggered during these memory-intensive
operations. To reduce the number of garbage collection processes, one may set
<code class="code">org-roam-db-gc-threshold</code> to a high value (such as <code class="code">most-positive-fixnum</code>):
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(setq org-roam-db-gc-threshold most-positive-fixnum)
</pre></div>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="The-Org_002dmode-Ecosystem">
<div class="nav-panel">
<p>
Next: <a href="#FAQ" accesskey="n" rel="next">FAQ</a>, Previous: <a href="#Performance-Optimization" accesskey="p" rel="prev">Performance Optimization</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="The-Org_002dmode-Ecosystem-1"><span>15 The Org-mode Ecosystem<a class="copiable-link" href="#The-Org_002dmode-Ecosystem-1"> &para;</a></span></h2>
<p>Because Org-roam is built on top of Org-mode, it benefits from the vast number
of packages already available.
</p>
<ul class="mini-toc">
<li><a href="#Browsing-History-with-winner_002dmode" accesskey="1">Browsing History with winner-mode</a></li>
<li><a href="#Versioning-Notes" accesskey="2">Versioning Notes</a></li>
<li><a href="#Full_002dtext-search-with-Deft" accesskey="3">Full-text search with Deft</a></li>
<li><a href="#Org_002djournal" accesskey="4">Org-journal</a></li>
<li><a href="#Org_002ddownload" accesskey="5">Org-download</a></li>
<li><a href="#mathpixel" accesskey="6">mathpix.el</a></li>
<li><a href="#Org_002dnoter-_002f-Interleave" accesskey="7">Org-noter / Interleave</a></li>
<li><a href="#Bibliography" accesskey="8">Bibliography</a></li>
<li><a href="#Spaced-Repetition" accesskey="9">Spaced Repetition</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Browsing-History-with-winner_002dmode">
<div class="nav-panel">
<p>
Next: <a href="#Versioning-Notes" accesskey="n" rel="next">Versioning Notes</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Browsing-History-with-winner_002dmode-1"><span>15.1 Browsing History with winner-mode<a class="copiable-link" href="#Browsing-History-with-winner_002dmode-1"> &para;</a></span></h3>
<p><code class="code">winner-mode</code> is a global minor mode that allows one to undo and redo changes in
the window configuration. It is included with GNU Emacs since version 20.
</p>
<p><code class="code">winner-mode</code> can be used as a simple version of browser history for Org-roam.
Each click through org-roam links (from both Org files and the backlinks buffer)
causes changes in window configuration, which can be undone and redone using
<code class="code">winner-mode</code>. To use <code class="code">winner-mode</code>, simply enable it, and bind the appropriate
interactive functions:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(winner-mode +1)
(define-key winner-mode-map (kbd &quot;&lt;M-left&gt;&quot;) #'winner-undo)
(define-key winner-mode-map (kbd &quot;&lt;M-right&gt;&quot;) #'winner-redo)
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="Versioning-Notes">
<div class="nav-panel">
<p>
Next: <a href="#Full_002dtext-search-with-Deft" accesskey="n" rel="next">Full-text search with Deft</a>, Previous: <a href="#Browsing-History-with-winner_002dmode" accesskey="p" rel="prev">Browsing History with winner-mode</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Versioning-Notes-1"><span>15.2 Versioning Notes<a class="copiable-link" href="#Versioning-Notes-1"> &para;</a></span></h3>
<p>Since Org-roam notes are just plain text, it is trivial to track changes in your
notes database using version control systems such as <a class="uref" href="https://git-scm.com/">Git</a>. Simply initialize
<code class="code">org-roam-directory</code> as a Git repository, and commit your files at regular or
appropriate intervals. <a class="uref" href="https://magit.vc/">Magit</a> is a great interface to Git within Emacs.
</p>
<p>In addition, it may be useful to observe how a particular note has evolved, by
looking at the file history. <a class="uref" href="https://gitlab.com/pidu/git-timemachine">Git-timemachine</a> allows you to visit historic
versions of a tracked Org-roam note.
</p>
<hr>
</div>
<div class="section-level-extent" id="Full_002dtext-search-with-Deft">
<div class="nav-panel">
<p>
Next: <a href="#Org_002djournal" accesskey="n" rel="next">Org-journal</a>, Previous: <a href="#Versioning-Notes" accesskey="p" rel="prev">Versioning Notes</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Full_002dtext-search-with-Deft-1"><span>15.3 Full-text search with Deft<a class="copiable-link" href="#Full_002dtext-search-with-Deft-1"> &para;</a></span></h3>
<p><a class="uref" href="https://jblevins.org/projects/deft/">Deft</a> provides a nice interface for browsing and filtering org-roam notes.
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(use-package deft
:after org
:bind
(&quot;C-c n d&quot; . deft)
:custom
(deft-recursive t)
(deft-use-filter-string-for-filename t)
(deft-default-extension &quot;org&quot;)
(deft-directory org-roam-directory))
</pre></div>
<p>The Deft interface can slow down quickly when the number of files get huge.
<a class="uref" href="https://github.com/hasu/notdeft">Notdeft</a> is a fork of Deft that uses an external search engine and indexer.
</p>
<hr>
</div>
<div class="section-level-extent" id="Org_002djournal">
<div class="nav-panel">
<p>
Next: <a href="#Org_002ddownload" accesskey="n" rel="next">Org-download</a>, Previous: <a href="#Full_002dtext-search-with-Deft" accesskey="p" rel="prev">Full-text search with Deft</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Org_002djournal-1"><span>15.4 Org-journal<a class="copiable-link" href="#Org_002djournal-1"> &para;</a></span></h3>
<p><a class="uref" href="https://github.com/bastibe/org-journal">Org-journal</a> provides journaling capabilities to Org-mode. A lot of its
functionalities have been incorporated into Org-roam under the name
<a class="ref" href="#org_002droam_002ddailies"><code class="code">org-roam-dailies</code></a>. It remains a good tool if you want to isolate your verbose
journal entries from the ideas you would write on a scratchpad.
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(use-package org-journal
:bind
(&quot;C-c n j&quot; . org-journal-new-entry)
:custom
(org-journal-date-prefix &quot;#+title: &quot;)
(org-journal-file-format &quot;%Y-%m-%d.org&quot;)
(org-journal-dir &quot;/path/to/journal/files/&quot;)
(org-journal-date-format &quot;%A, %d %B %Y&quot;))
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="Org_002ddownload">
<div class="nav-panel">
<p>
Next: <a href="#mathpixel" accesskey="n" rel="next">mathpix.el</a>, Previous: <a href="#Org_002djournal" accesskey="p" rel="prev">Org-journal</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Org_002ddownload-1"><span>15.5 Org-download<a class="copiable-link" href="#Org_002ddownload-1"> &para;</a></span></h3>
<p><a class="uref" href="https://github.com/abo-abo/org-download">Org-download</a> lets you screenshot and yank images from the web into your notes:
</p>
<div class="float">
<img class="image" src="images/org-download.gif" alt="images/org-download">
<div class="caption"><p><strong class="strong">Figure: </strong>org-download</p></div></div>
<div class="example lisp">
<pre class="lisp-preformatted">(use-package org-download
:after org
:bind
(:map org-mode-map
((&quot;s-Y&quot; . org-download-screenshot)
(&quot;s-y&quot; . org-download-yank))))
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="mathpixel">
<div class="nav-panel">
<p>
Next: <a href="#Org_002dnoter-_002f-Interleave" accesskey="n" rel="next">Org-noter / Interleave</a>, Previous: <a href="#Org_002ddownload" accesskey="p" rel="prev">Org-download</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="mathpix_002eel"><span>15.6 mathpix.el<a class="copiable-link" href="#mathpix_002eel"> &para;</a></span></h3>
<p><a class="uref" href="https://github.com/jethrokuan/mathpix.el">mathpix.el</a> uses <a class="uref" href="https://mathpix.com/">Mathpix&rsquo;s</a> API to convert clips into latex equations:
</p>
<div class="float">
<img class="image" src="images/mathpix.gif" alt="images/mathpix">
<div class="caption"><p><strong class="strong">Figure: </strong>mathpix</p></div></div>
<div class="example lisp">
<pre class="lisp-preformatted">(use-package mathpix.el
:straight (:host github :repo &quot;jethrokuan/mathpix.el&quot;)
:custom ((mathpix-app-id &quot;app-id&quot;)
(mathpix-app-key &quot;app-key&quot;))
:bind
(&quot;C-x m&quot; . mathpix-screenshot))
</pre></div>
<hr>
</div>
<div class="section-level-extent" id="Org_002dnoter-_002f-Interleave">
<div class="nav-panel">
<p>
Next: <a href="#Bibliography" accesskey="n" rel="next">Bibliography</a>, Previous: <a href="#mathpixel" accesskey="p" rel="prev">mathpix.el</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Org_002dnoter-_002f-Interleave-1"><span>15.7 Org-noter / Interleave<a class="copiable-link" href="#Org_002dnoter-_002f-Interleave-1"> &para;</a></span></h3>
<p><a class="uref" href="https://github.com/weirdNox/org-noter">Org-noter</a> and <a class="uref" href="https://github.com/rudolfochrist/interleave">Interleave</a> are both projects that allow synchronised annotation of
documents (PDF, EPUB etc.) within Org-mode.
</p>
<hr>
</div>
<div class="section-level-extent" id="Bibliography">
<div class="nav-panel">
<p>
Next: <a href="#Spaced-Repetition" accesskey="n" rel="next">Spaced Repetition</a>, Previous: <a href="#Org_002dnoter-_002f-Interleave" accesskey="p" rel="prev">Org-noter / Interleave</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Bibliography-1"><span>15.8 Bibliography<a class="copiable-link" href="#Bibliography-1"> &para;</a></span></h3>
<p>Org 9.5 added native citation and bibliography functionality, called &ldquo;org-cite&rdquo;,
which org-roam supports.
</p>
<p><a class="uref" href="https://github.com/org-roam/org-roam-bibtex">org-roam-bibtex</a> offers tight integration between <a class="uref" href="https://github.com/jkitchin/org-ref">org-ref</a>, <a class="uref" href="https://github.com/tmalsburg/helm-bibtex">helm-bibtex</a> and
<code class="code">org-roam</code>. This helps you manage your bibliographic notes under <code class="code">org-roam</code>.
</p>
<p>For example, though helm-bibtex provides the ability to visit notes for
bibliographic entries, org-roam-bibtex extends it with the ability to visit the
file with the right <code class="code">ROAM_REFS</code>.
</p>
<hr>
</div>
<div class="section-level-extent" id="Spaced-Repetition">
<div class="nav-panel">
<p>
Previous: <a href="#Bibliography" accesskey="p" rel="prev">Bibliography</a>, Up: <a href="#The-Org_002dmode-Ecosystem" accesskey="u" rel="up">The Org-mode Ecosystem</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Spaced-Repetition-1"><span>15.9 Spaced Repetition<a class="copiable-link" href="#Spaced-Repetition-1"> &para;</a></span></h3>
<p><a class="uref" href="https://www.leonrische.me/fc/index.html">Org-fc</a> is a spaced repetition system that scales well with a large number of
files. Other alternatives include <a class="uref" href="https://orgmode.org/worg/org-contrib/org-drill.html">org-drill</a>, and <a class="uref" href="https://github.com/abo-abo/pamparam">pamparam</a>.
</p>
<p>To use Anki for spaced repetition, <a class="uref" href="https://github.com/louietan/anki-editor">anki-editor</a> allows you to write your cards in
Org-mode, and sync your cards to Anki via <a class="uref" href="https://github.com/FooSoft/anki-connect#installation">anki-connect</a>.
</p>
<hr>
</div>
</div>
<div class="chapter-level-extent" id="FAQ">
<div class="nav-panel">
<p>
Next: <a href="#Developer_0027s-Guide-to-Org_002droam" accesskey="n" rel="next">Developer&rsquo;s Guide to Org-roam</a>, Previous: <a href="#The-Org_002dmode-Ecosystem" accesskey="p" rel="prev">The Org-mode Ecosystem</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="FAQ-1"><span>16 FAQ<a class="copiable-link" href="#FAQ-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#How-do-I-have-more-than-one-Org_002droam-directory_003f" accesskey="1">How do I have more than one Org-roam directory?</a></li>
<li><a href="#How-do-I-create-a-note-whose-title-already-matches-one-of-the-candidates_003f" accesskey="2">How do I create a note whose title already matches one of the candidates?</a></li>
<li><a href="#How-can-I-stop-Org_002droam-from-creating-IDs-everywhere_003f" accesskey="3">How can I stop Org-roam from creating IDs everywhere?</a></li>
<li><a href="#How-do-I-migrate-from-Roam-Research_003f" accesskey="4">How do I migrate from Roam Research?</a></li>
<li><a href="#How-to-migrate-from-Org_002droam-v1_003f" accesskey="5">How to migrate from Org-roam v1?</a></li>
<li><a href="#How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f" accesskey="6">How do I publish my notes with an Internet-friendly graph?</a></li>
</ul>
<hr>
<div class="section-level-extent" id="How-do-I-have-more-than-one-Org_002droam-directory_003f">
<div class="nav-panel">
<p>
Next: <a href="#How-do-I-create-a-note-whose-title-already-matches-one-of-the-candidates_003f" accesskey="n" rel="next">How do I create a note whose title already matches one of the candidates?</a>, Up: <a href="#FAQ" accesskey="u" rel="up">FAQ</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-do-I-have-more-than-one-Org_002droam-directory_003f-1"><span>16.1 How do I have more than one Org-roam directory?<a class="copiable-link" href="#How-do-I-have-more-than-one-Org_002droam-directory_003f-1"> &para;</a></span></h3>
<p>Emacs supports directory-local variables, allowing the value of
<code class="code">org-roam-directory</code> to be different in different directories. It does this by
checking for a file named <code class="code">.dir-locals.el</code>.
</p>
<p>To add support for multiple directories, override the <code class="code">org-roam-directory</code>
variable using directory-local variables. This is what <code class="code">.dir-locals.el</code> may
contain:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">((nil . ((org-roam-directory . &quot;/path/to/alt/org-roam-dir&quot;)
(org-roam-db-location . &quot;/path/to/alt/org-roam-dir/org-roam.db&quot;))))
</pre></div>
<p>Note <code class="code">org-roam-directory</code> and <code class="code">org-roam-db-location</code> should be an absolute path, not relative.
</p>
<p>Alternatively, use <code class="code">eval</code> if you wish to call functions:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">((nil . ((eval . (setq-local
org-roam-directory (expand-file-name (locate-dominating-file
default-directory &quot;.dir-locals.el&quot;))))
(eval . (setq-local
org-roam-db-location (expand-file-name &quot;org-roam.db&quot;
org-roam-directory))))))
</pre></div>
<p>All files within that directory will be treated as their own separate set of
Org-roam files. Remember to run <code class="code">org-roam-db-sync</code> from a file within
that directory, at least once.
</p>
<hr>
</div>
<div class="section-level-extent" id="How-do-I-create-a-note-whose-title-already-matches-one-of-the-candidates_003f">
<div class="nav-panel">
<p>
Next: <a href="#How-can-I-stop-Org_002droam-from-creating-IDs-everywhere_003f" accesskey="n" rel="next">How can I stop Org-roam from creating IDs everywhere?</a>, Previous: <a href="#How-do-I-have-more-than-one-Org_002droam-directory_003f" accesskey="p" rel="prev">How do I have more than one Org-roam directory?</a>, Up: <a href="#FAQ" accesskey="u" rel="up">FAQ</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-do-I-create-a-note-whose-title-already-matches-one-of-the-candidates_003f-1"><span>16.2 How do I create a note whose title already matches one of the candidates?<a class="copiable-link" href="#How-do-I-create-a-note-whose-title-already-matches-one-of-the-candidates_003f-1"> &para;</a></span></h3>
<p>This situation arises when, for example, one would like to create a note titled
&ldquo;bar&rdquo; when &ldquo;barricade&rdquo; already exists.
</p>
<p>The solution is dependent on the mini-buffer completion framework in use. Here
are the solutions:
</p>
<dl class="table">
<dt>Ivy</dt>
<dd><p>call <code class="code">ivy-immediate-done</code>, typically bound to <code class="code">C-M-j</code>. Alternatively,
set <code class="code">ivy-use-selectable-prompt</code> to <code class="code">t</code>, so that &ldquo;bar&rdquo; is now selectable.
</p></dd>
<dt>Helm</dt>
<dd><p>Org-roam should provide a selectable &ldquo;[?] bar&rdquo; candidate at the top of
the candidate list.
</p></dd>
</dl>
<hr>
</div>
<div class="section-level-extent" id="How-can-I-stop-Org_002droam-from-creating-IDs-everywhere_003f">
<div class="nav-panel">
<p>
Next: <a href="#How-do-I-migrate-from-Roam-Research_003f" accesskey="n" rel="next">How do I migrate from Roam Research?</a>, Previous: <a href="#How-do-I-create-a-note-whose-title-already-matches-one-of-the-candidates_003f" accesskey="p" rel="prev">How do I create a note whose title already matches one of the candidates?</a>, Up: <a href="#FAQ" accesskey="u" rel="up">FAQ</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-can-I-stop-Org_002droam-from-creating-IDs-everywhere_003f-1"><span>16.3 How can I stop Org-roam from creating IDs everywhere?<a class="copiable-link" href="#How-can-I-stop-Org_002droam-from-creating-IDs-everywhere_003f-1"> &para;</a></span></h3>
<p>Other than the interactive commands that Org-roam provides, Org-roam does not
create IDs everywhere. If you are noticing that IDs are being created even when
you don&rsquo;t want them to be (e.g. when tangling an Org file), check the value you
have set for <code class="code">org-id-link-to-org-use-id</code>: setting it to <code class="code">'create-if-interactive</code>
is a popular option.
</p>
<hr>
</div>
<div class="section-level-extent" id="How-do-I-migrate-from-Roam-Research_003f">
<div class="nav-panel">
<p>
Next: <a href="#How-to-migrate-from-Org_002droam-v1_003f" accesskey="n" rel="next">How to migrate from Org-roam v1?</a>, Previous: <a href="#How-can-I-stop-Org_002droam-from-creating-IDs-everywhere_003f" accesskey="p" rel="prev">How can I stop Org-roam from creating IDs everywhere?</a>, Up: <a href="#FAQ" accesskey="u" rel="up">FAQ</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-do-I-migrate-from-Roam-Research_003f-1"><span>16.4 How do I migrate from Roam Research?<a class="copiable-link" href="#How-do-I-migrate-from-Roam-Research_003f-1"> &para;</a></span></h3>
<p>Fabio has produced a command-line tool that converts markdown files exported
from Roam Research into Org-roam compatible markdown. More instructions are
provided <a class="uref" href="https://github.com/fabioberger/roam-migration">in the repository</a>.
</p>
<hr>
</div>
<div class="section-level-extent" id="How-to-migrate-from-Org_002droam-v1_003f">
<div class="nav-panel">
<p>
Next: <a href="#How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f" accesskey="n" rel="next">How do I publish my notes with an Internet-friendly graph?</a>, Previous: <a href="#How-do-I-migrate-from-Roam-Research_003f" accesskey="p" rel="prev">How do I migrate from Roam Research?</a>, Up: <a href="#FAQ" accesskey="u" rel="up">FAQ</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-to-migrate-from-Org_002droam-v1_003f-1"><span>16.5 How to migrate from Org-roam v1?<a class="copiable-link" href="#How-to-migrate-from-Org_002droam-v1_003f-1"> &para;</a></span></h3>
<p>Those coming from Org-roam v1 will do well treating v2 as entirely new software.
V2 has a smaller core and fewer moving parts, while retaining the bulk of its
functionality. It is recommended to read the documentation above about nodes.
</p>
<p>It is still desirable to migrate notes collected in v1 to v2.
To migrate your v1 notes to v2, use &lsquo;<samp class="samp">M-x org-roam-migrate-wizard</samp>&rsquo;.
<a class="uref" href="https://d12frosted.io/posts/2021-06-11-path-to-org-roam-v2.html">This blog post</a>
provides a good overview of what&rsquo;s new in v2 and how to migrate.
</p>
<p>Essentially, to migrate notes from v1 to v2, one must:
</p>
<ol class="enumerate">
<li> Add IDs to all existing notes.
These are located in top-level property drawers
(Although note that in v2, not all files need to have IDs).
</li><li> Update the Org-roam database to conform to the new schema.
</li><li> Replace <code class="code">#+ROAM_KEY</code> into the <code class="code">ROAM_REFS</code> property
</li><li> Replace <code class="code">#+ROAM_ALIAS</code> into the <code class="code">ROAM_ALIASES</code> property
</li><li> Move <code class="code">#+ROAM_TAGS</code> into the <code class="code">#+FILETAGS</code> property for file-level nodes,
and the <code class="code">ROAM_TAGS</code> property for headline nodes
</li><li> Replace existing file links with ID links.
</li></ol>
<hr>
</div>
<div class="section-level-extent" id="How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f">
<div class="nav-panel">
<p>
Previous: <a href="#How-to-migrate-from-Org_002droam-v1_003f" accesskey="p" rel="prev">How to migrate from Org-roam v1?</a>, Up: <a href="#FAQ" accesskey="u" rel="up">FAQ</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f-1"><span>16.6 How do I publish my notes with an Internet-friendly graph?<a class="copiable-link" href="#How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f-1"> &para;</a></span></h3>
<p>The default graph builder creates a graph with an <a class="uref" href="https://orgmode.org/worg/org-contrib/org-protocol.html">org-protocol</a>
handler which is convenient when you&rsquo;re working locally but
inconvenient when you want to publish your notes for remote access.
Likewise, it defaults to displaying the graph in Emacs which has the
exact same caveats. This problem is solvable in the following way
using org-mode&rsquo;s native <a class="uref" href="https://orgmode.org/manual/Publishing.html">publishing</a> capability:
</p>
<ol class="enumerate">
<li> configure org-mode to publish your org-roam notes as a project.
</li><li> create a function that overrides the default org-protocol link
creation function(&lsquo;<samp class="samp">org-roam-default-link-builder</samp>&rsquo;).
</li><li> create a hook that&rsquo;s called at the end of graph creation to copy
the generated graph to the appropriate place.
</li></ol>
<p>The example code below is used to publish to a local directory where a
separate shell script copies the files to the remote site.
</p>
<ul class="mini-toc">
<li><a href="#Configure-org_002dmode-for-publishing" accesskey="1">Configure org-mode for publishing</a></li>
<li><a href="#Overriding-the-default-link-creation-function" accesskey="2">Overriding the default link creation function</a></li>
<li><a href="#Copying-the-generated-file-to-the-export-directory" accesskey="3">Copying the generated file to the export directory</a></li>
</ul>
<hr>
<div class="subsection-level-extent" id="Configure-org_002dmode-for-publishing">
<div class="nav-panel">
<p>
Next: <a href="#Overriding-the-default-link-creation-function" accesskey="n" rel="next">Overriding the default link creation function</a>, Up: <a href="#How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f" accesskey="u" rel="up">How do I publish my notes with an Internet-friendly graph?</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Configure-org_002dmode-for-publishing-1"><span>16.6.1 Configure org-mode for publishing<a class="copiable-link" href="#Configure-org_002dmode-for-publishing-1"> &para;</a></span></h4>
<p>This has two steps:
</p><ol class="enumerate">
<li> Setting of a <em class="emph">roam</em> project that publishes your notes.
</li><li> Configuring the <em class="emph">sitemap.html</em> generation.
</li><li> Setting up &lsquo;<samp class="samp">org-publish</samp>&rsquo; to generate the graph.
</li></ol>
<p>This will require code like the following:
</p><div class="example lisp">
<pre class="lisp-preformatted">(defun roam-sitemap (title list)
(concat &quot;#+OPTIONS: ^:nil author:nil html-postamble:nil\n&quot;
&quot;#+SETUPFILE: ./simple_inline.theme\n&quot;
&quot;#+TITLE: &quot; title &quot;\n\n&quot;
(org-list-to-org list) &quot;\nfile:sitemap.svg&quot;))
(setq my-publish-time 0) ; see the next section for context
(defun roam-publication-wrapper (plist filename pubdir)
(org-roam-graph)
(org-html-publish-to-html plist filename pubdir)
(setq my-publish-time (cadr (current-time))))
(setq org-publish-project-alist
'((&quot;roam&quot;
:base-directory &quot;~/roam&quot;
:auto-sitemap t
:sitemap-function roam-sitemap
:sitemap-title &quot;Roam notes&quot;
:publishing-function roam-publication-wrapper
:publishing-directory &quot;~/roam-export&quot;
:section-number nil
:table-of-contents nil
:style &quot;&lt;link rel=\&quot;stylesheet\&quot; href=\&quot;../other/mystyle.cs\&quot; type=\&quot;text/css\&quot;&gt;&quot;)))
</pre></div>
<hr>
</div>
<div class="subsection-level-extent" id="Overriding-the-default-link-creation-function">
<div class="nav-panel">
<p>
Next: <a href="#Copying-the-generated-file-to-the-export-directory" accesskey="n" rel="next">Copying the generated file to the export directory</a>, Previous: <a href="#Configure-org_002dmode-for-publishing" accesskey="p" rel="prev">Configure org-mode for publishing</a>, Up: <a href="#How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f" accesskey="u" rel="up">How do I publish my notes with an Internet-friendly graph?</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Overriding-the-default-link-creation-function-1"><span>16.6.2 Overriding the default link creation function<a class="copiable-link" href="#Overriding-the-default-link-creation-function-1"> &para;</a></span></h4>
<p>The code below will generate a link to the generated html file instead
of the default org-protocol link.
</p><div class="example lisp">
<pre class="lisp-preformatted">(defun org-roam-custom-link-builder (node)
(let ((file (org-roam-node-file node)))
(concat (file-name-base file) &quot;.html&quot;)))
(setq org-roam-graph-link-builder 'org-roam-custom-link-builder)
</pre></div>
<hr>
</div>
<div class="subsection-level-extent" id="Copying-the-generated-file-to-the-export-directory">
<div class="nav-panel">
<p>
Previous: <a href="#Overriding-the-default-link-creation-function" accesskey="p" rel="prev">Overriding the default link creation function</a>, Up: <a href="#How-do-I-publish-my-notes-with-an-Internet_002dfriendly-graph_003f" accesskey="u" rel="up">How do I publish my notes with an Internet-friendly graph?</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Copying-the-generated-file-to-the-export-directory-1"><span>16.6.3 Copying the generated file to the export directory<a class="copiable-link" href="#Copying-the-generated-file-to-the-export-directory-1"> &para;</a></span></h4>
<p>The default behavior of &lsquo;<samp class="samp">org-roam-graph</samp>&rsquo; is to generate the graph and
display it in Emacs. There is an &lsquo;<samp class="samp">org-roam-graph-generation-hook</samp>&rsquo;
available that provides access to the file names so they can be copied
to the publishing directory. Example code follows:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(add-hook 'org-roam-graph-generation-hook
(lambda (dot svg) (if (&lt; (- (cadr (current-time)) my-publish-time) 5)
(progn (copy-file svg &quot;~/roam-export/sitemap.svg&quot; 't)
(kill-buffer (file-name-nondirectory svg))
(setq my-publish-time 0)))))
</pre></div>
<hr>
</div>
</div>
</div>
<div class="chapter-level-extent" id="Developer_0027s-Guide-to-Org_002droam">
<div class="nav-panel">
<p>
Next: <a href="#Appendix" accesskey="n" rel="next">Appendix</a>, Previous: <a href="#FAQ" accesskey="p" rel="prev">FAQ</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Developer_0027s-Guide-to-Org_002droam-1"><span>17 Developer&rsquo;s Guide to Org-roam<a class="copiable-link" href="#Developer_0027s-Guide-to-Org_002droam-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#Org_002droam_0027s-Design-Principle" accesskey="1">Org-roam&rsquo;s Design Principle</a></li>
<li><a href="#Building-Extensions-and-Advanced-Customization-of-Org_002droam" accesskey="2">Building Extensions and Advanced Customization of Org-roam</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Org_002droam_0027s-Design-Principle">
<div class="nav-panel">
<p>
Next: <a href="#Building-Extensions-and-Advanced-Customization-of-Org_002droam" accesskey="n" rel="next">Building Extensions and Advanced Customization of Org-roam</a>, Up: <a href="#Developer_0027s-Guide-to-Org_002droam" accesskey="u" rel="up">Developer&rsquo;s Guide to Org-roam</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Org_002droam_0027s-Design-Principle-1"><span>17.1 Org-roam&rsquo;s Design Principle<a class="copiable-link" href="#Org_002droam_0027s-Design-Principle-1"> &para;</a></span></h3>
<p>Org-roam is primarily motivated by the need for a dual representation. We
(humans) love operating in a plain-text environment. The syntax rules of
Org-mode are simple and fit snugly within our brain. This also allows us to use
the tools and packages we love to explore and edit our notes. Org-mode is simply
the most powerful plain-text format available, with support for images, LaTeX,
TODO planning and much more.
</p>
<p>But this plain-text format is simply ill-suited for exploration of these notes:
plain-text is simply not amenable for answering large-scale, complex queries
(e.g. how many tasks do I have that are due by next week?). Interfaces such as
Org-agenda slow to a crawl when the number of files becomes unwieldy, which can
quickly become the case.
</p>
<p>At its core, Org-roam provides a database abstraction layer, providing a dual
representation of what&rsquo;s already available in plain-text. This allows us
(humans) to continue working with plain-text, while programs can utilize the
database layer to perform complex queries. These capabilities include, but are
not limited to:
</p>
<ul class="itemize mark-bullet">
<li>link graph traversal and visualization
</li><li>Instantaneous SQL-like queries on headlines
<ul class="itemize mark-bullet">
<li>What are my TODOs, scheduled for X, or due by Y?
</li></ul>
</li><li>Accessing the properties of a node, such as its tags, refs, TODO state or
priority
</li></ul>
<p>All of these functionality is powered by this database abstraction layer. Hence,
at its core Org-roam&rsquo;s primary goal is to provide a resilient dual
representation that is cheap to maintain, easy to understand, and is as
up-to-date as it possibly can. Org-roam also then exposes an API to this
database abstraction layer for users who would like to perform programmatic
queries on their Org files.
</p>
<hr>
</div>
<div class="section-level-extent" id="Building-Extensions-and-Advanced-Customization-of-Org_002droam">
<div class="nav-panel">
<p>
Previous: <a href="#Org_002droam_0027s-Design-Principle" accesskey="p" rel="prev">Org-roam&rsquo;s Design Principle</a>, Up: <a href="#Developer_0027s-Guide-to-Org_002droam" accesskey="u" rel="up">Developer&rsquo;s Guide to Org-roam</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Building-Extensions-and-Advanced-Customization-of-Org_002droam-1"><span>17.2 Building Extensions and Advanced Customization of Org-roam<a class="copiable-link" href="#Building-Extensions-and-Advanced-Customization-of-Org_002droam-1"> &para;</a></span></h3>
<p>Because Org-roam&rsquo;s core functionality is small, it is possible and sometimes
desirable to build extensions on top of it. These extensions may use one or more of
the following functionalities:
</p>
<ul class="itemize mark-bullet">
<li>Access to Org-roam&rsquo;s database
</li><li>Usage/modification of Org-roam&rsquo;s interactive commands
</li></ul>
<p>Org-roam provides no guarantees that extensions will continue to function as
Org-roam evolves, but by following these simple rules, extensions can be made
robust to local changes in Org-roam.
</p>
<ol class="enumerate">
<li> Extensions should not modify the database schema. Any extension that requires
the caching of additional data should make a request upstream to Org-roam.
</li><li> Extensions requiring access to the database should explicitly state support
for the database version (<code class="code">org-roam-db-version</code>), and only conditionally
load when support is available.
</li></ol>
<ul class="mini-toc">
<li><a href="#Accessing-the-Database" accesskey="1">Accessing the Database</a></li>
<li><a href="#Accessing-and-Modifying-Nodes" accesskey="2">Accessing and Modifying Nodes</a></li>
<li><a href="#Extending-the-Capture-System" accesskey="3">Extending the Capture System</a></li>
</ul>
<hr>
<div class="subsection-level-extent" id="Accessing-the-Database">
<div class="nav-panel">
<p>
Next: <a href="#Accessing-and-Modifying-Nodes" accesskey="n" rel="next">Accessing and Modifying Nodes</a>, Up: <a href="#Building-Extensions-and-Advanced-Customization-of-Org_002droam" accesskey="u" rel="up">Building Extensions and Advanced Customization of Org-roam</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Accessing-the-Database-1"><span>17.2.1 Accessing the Database<a class="copiable-link" href="#Accessing-the-Database-1"> &para;</a></span></h4>
<p>Access to the database is provided singularly by <code class="code">org-roam-db-query</code>, for
example:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(org-roam-db-query [:select * :from nodes])
</pre></div>
<p>One can refer to the database schema by looking up
<code class="code">org-roam-db--table-schemata</code>. There are multiple helper functions within
Org-roam that call <code class="code">org-roam-db-query</code>, these are subject to change. To ensure
that extensions/customizations are robust to change, extensions should only use
<code class="code">org-roam-db-query</code>, and perhaps replicate the SQL query if necessary.
</p>
<hr>
</div>
<div class="subsection-level-extent" id="Accessing-and-Modifying-Nodes">
<div class="nav-panel">
<p>
Next: <a href="#Extending-the-Capture-System" accesskey="n" rel="next">Extending the Capture System</a>, Previous: <a href="#Accessing-the-Database" accesskey="p" rel="prev">Accessing the Database</a>, Up: <a href="#Building-Extensions-and-Advanced-Customization-of-Org_002droam" accesskey="u" rel="up">Building Extensions and Advanced Customization of Org-roam</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Accessing-and-Modifying-Nodes-1"><span>17.2.2 Accessing and Modifying Nodes<a class="copiable-link" href="#Accessing-and-Modifying-Nodes-1"> &para;</a></span></h4>
<p>The node interface is cleanly defined using <code class="code">cl-defstruct</code>. The primary
method to access nodes is <code class="code">org-roam-node-at-point</code> and <code class="code">org-roam-node-read</code>:
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-node-at-point &amp;optional assert
<p>Return the node at point. If ASSERT, throw an error if there is no node at
point.
</p>
</li><li>Function: org-roam-node-read &amp;optional initial-input filter-fn sort-fn
require-match
<p>Read and return an &lsquo;org-roam-node&rsquo;.
INITIAL-INPUT is the initial minibuffer prompt value. FILTER-FN
is a function to filter out nodes: it takes a single argument (an
<code class="code">org-roam-node</code>), and when nil is returned the node will be
filtered out.
SORT-FN is a function to sort nodes. See <code class="code">org-roam-node-read-sort-by-file-mtime</code>
for an example sort function.
If REQUIRE-MATCH, the minibuffer prompt will require a match.
</p></li></ul>
<p>Once you obtain the node, you can use the accessors for the node, e.g.
<code class="code">org-roam-node-id</code> or <code class="code">org-roam-node-todo</code>.
</p>
<p>It is possible to define (or override existing) properties on nodes. This is
simply done using a <code class="code">cl-defmethod</code> on the <code class="code">org-roam-node</code> struct:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(cl-defmethod org-roam-node-namespace ((node org-roam-node))
&quot;Return the namespace for NODE.
The namespace is the final directory of the file for the node.&quot;
(file-name-nondirectory
(directory-file-name
(file-name-directory (org-roam-node-file node)))))
</pre></div>
<p>The snippet above defines a new property <code class="code">namespace</code> on <code class="code">org-roam-node</code>, which
making it available for use in capture templates.
</p>
<hr>
</div>
<div class="subsection-level-extent" id="Extending-the-Capture-System">
<div class="nav-panel">
<p>
Previous: <a href="#Accessing-and-Modifying-Nodes" accesskey="p" rel="prev">Accessing and Modifying Nodes</a>, Up: <a href="#Building-Extensions-and-Advanced-Customization-of-Org_002droam" accesskey="u" rel="up">Building Extensions and Advanced Customization of Org-roam</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h4 class="subsection" id="Extending-the-Capture-System-1"><span>17.2.3 Extending the Capture System<a class="copiable-link" href="#Extending-the-Capture-System-1"> &para;</a></span></h4>
<p>Org-roam applies some patching over Org&rsquo;s capture system to smooth out the user
experience, and sometimes it is desirable to use Org-roam&rsquo;s capturing system
instead. The exposed function to be used in extensions is <code class="code">org-roam-capture-</code>:
</p>
<ul class="itemize mark-bullet">
<li>Function: org-roam-capture- &amp;key goto keys node info props templates
<p>Main entry point.
GOTO and KEYS correspond to &lsquo;org-capture&rsquo; arguments.
INFO is a plist for filling up Org-roam&rsquo;s capture templates.
NODE is an &lsquo;org-roam-node&rsquo; construct containing information about the node.
PROPS is a plist containing additional Org-roam properties for each template.
TEMPLATES is a list of org-roam templates.
</p></li></ul>
<p>An example of an extension using <code class="code">org-roam-capture-</code> is <code class="code">org-roam-dailies</code>
itself:
</p>
<div class="example lisp">
<pre class="lisp-preformatted">(defun org-roam-dailies--capture (time &amp;optional goto)
&quot;Capture an entry in a daily-note for TIME, creating it if necessary.
When GOTO is non-nil, go the note without creating an entry.&quot;
(org-roam-capture- :goto (when goto '(4))
:node (org-roam-node-create)
:templates org-roam-dailies-capture-templates
:props (list :override-default-time time))
(when goto (run-hooks 'org-roam-dailies-find-file-hook)))
</pre></div>
<hr>
</div>
</div>
</div>
<div class="chapter-level-extent" id="Appendix">
<div class="nav-panel">
<p>
Next: <a href="#Keystroke-Index" accesskey="n" rel="next">Keystroke Index</a>, Previous: <a href="#Developer_0027s-Guide-to-Org_002droam" accesskey="p" rel="prev">Developer&rsquo;s Guide to Org-roam</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="chapter" id="Appendix-1"><span>18 Appendix<a class="copiable-link" href="#Appendix-1"> &para;</a></span></h2>
<ul class="mini-toc">
<li><a href="#Note_002dtaking-Workflows" accesskey="1">Note-taking Workflows</a></li>
<li><a href="#Ecosystem" accesskey="2">Ecosystem</a></li>
</ul>
<hr>
<div class="section-level-extent" id="Note_002dtaking-Workflows">
<div class="nav-panel">
<p>
Next: <a href="#Ecosystem" accesskey="n" rel="next">Ecosystem</a>, Up: <a href="#Appendix" accesskey="u" rel="up">Appendix</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Note_002dtaking-Workflows-1"><span>18.1 Note-taking Workflows<a class="copiable-link" href="#Note_002dtaking-Workflows-1"> &para;</a></span></h3>
<dl class="table">
<dt>Books</dt>
<dd><ul class="itemize mark-bullet">
<li><a class="uref" href="https://www.goodreads.com/book/show/34507927-how-to-take-smart-notes">How To Take Smart Notes</a>
</li></ul>
</dd>
<dt>Articles</dt>
<dd><ul class="itemize mark-bullet">
<li><a class="uref" href="https://www.lesswrong.com/posts/NfdHG6oHBJ8Qxc26s/the-zettelkasten-method-1">The Zettelkasten Method - LessWrong 2.0</a>
</li><li><a class="uref" href="https://reddit.com/r/RoamResearch/comments/eho7de/building_a_second_brain_in_roamand_why_you_might">Building a Second Brain in Roam&hellip;And Why You Might Want To : RoamResearch</a>
</li><li><a class="uref" href="https://www.nateliason.com/blog/roam">Roam Research: Why I Love It and How I Use It - Nat Eliason</a>
</li><li><a class="uref" href="https://twitter.com/adam_keesling/status/1196864424725774336?s=20">Adam Keesling&rsquo;s Twitter Thread</a>
</li><li><a class="uref" href="https://blog.jethro.dev/posts/how_to_take_smart_notes_org/">How To Take Smart Notes With Org-mode · Jethro Kuan</a>
</li></ul>
</dd>
<dt>Threads</dt>
<dd><ul class="itemize mark-bullet">
<li><a class="uref" href="https://news.ycombinator.com/item?id=22473209">Ask HN: How to Take Good Notes</a>
</li></ul>
</dd>
<dt>Videos</dt>
<dd><ul class="itemize mark-bullet">
<li><a class="uref" href="https://www.youtube.com/watch?v=RvWic15iXjk">How to Use Roam to Outline a New Article in Under 20 Minutes</a>
</li></ul>
</dd>
</dl>
<hr>
</div>
<div class="section-level-extent" id="Ecosystem">
<div class="nav-panel">
<p>
Previous: <a href="#Note_002dtaking-Workflows" accesskey="p" rel="prev">Note-taking Workflows</a>, Up: <a href="#Appendix" accesskey="u" rel="up">Appendix</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h3 class="section" id="Ecosystem-1"><span>18.2 Ecosystem<a class="copiable-link" href="#Ecosystem-1"> &para;</a></span></h3>
<hr>
</div>
</div>
<div class="appendix-level-extent" id="Keystroke-Index">
<div class="nav-panel">
<p>
Next: <a href="#Command-Index" accesskey="n" rel="next">Command Index</a>, Previous: <a href="#Appendix" accesskey="p" rel="prev">Appendix</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="appendix" id="Keystroke-Index-1"><span>Appendix A Keystroke Index<a class="copiable-link" href="#Keystroke-Index-1"> &para;</a></span></h2>
<hr>
</div>
<div class="appendix-level-extent" id="Command-Index">
<div class="nav-panel">
<p>
Next: <a href="#Function-Index" accesskey="n" rel="next">Function Index</a>, Previous: <a href="#Keystroke-Index" accesskey="p" rel="prev">Keystroke Index</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="appendix" id="Command-Index-1"><span>Appendix B Command Index<a class="copiable-link" href="#Command-Index-1"> &para;</a></span></h2>
<hr>
</div>
<div class="appendix-level-extent" id="Function-Index">
<div class="nav-panel">
<p>
Next: <a href="#Variable-Index" accesskey="n" rel="next">Variable Index</a>, Previous: <a href="#Command-Index" accesskey="p" rel="prev">Command Index</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="appendix" id="Function-Index-1"><span>Appendix C Function Index<a class="copiable-link" href="#Function-Index-1"> &para;</a></span></h2>
<hr>
</div>
<div class="appendix-level-extent" id="Variable-Index">
<div class="nav-panel">
<p>
Previous: <a href="#Function-Index" accesskey="p" rel="prev">Function Index</a>, Up: <a href="#Top" accesskey="u" rel="up">Org-roam User Manual</a> &nbsp; [<a href="#Keystroke-Index" title="Index" rel="index">Index</a>]</p>
</div>
<h2 class="appendix" id="Variable-Index-1"><span>Appendix D Variable Index<a class="copiable-link" href="#Variable-Index-1"> &para;</a></span></h2>
<p>Emacs 30.1 (Org mode 9.7.29)
</p></div>
</div>
<div class="footnotes-segment">
<hr>
<h4 class="footnotes-heading">Footnotes</h4>
<h5 class="footnote-body-heading"><a id="FOOT1" href="#DOCF1">(1)</a></h5>
<p>To understand more about Roam, a collection of links are available in <a class="ref" href="#Note_002dtaking-Workflows">Note-taking Workflows</a>.</p>
</div>
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