Fix link replacement optimization

We are searching for a string literal for speed, so don’t treat it as a
regexp.

Fixes: fc8638759b ("feat: Limit link replacement scope")
Fixes: #2529

.github/workflows/tidy-issues.yml

@@ -0,0 +1,93 @@
+name: 'Manage stale/dormant issues and PRs'
+
+on:
+  schedule:
+    - cron: '0 1 * * *'  # Daily at 1 AM UTC
+  workflow_dispatch:  # Allow this to be run manually
+    inputs:
+      dry_run:
+        description: 'Dry run: Show what would happen without making changes'
+        required: false
+        default: 'false'
+        type: boolean
+
+jobs:
+  stale:
+    runs-on: ubuntu-latest
+    steps:
+      # Handle stale issues/PRs
+      - name: Mark/close stale issues and PRs
+        uses: actions/stale@v9
+        with:
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+
+          # Dry run setting
+          debug-only: ${{ github.event.inputs.dry_run == 'true' }}
+
+          # Messages
+          stale-issue-message: |
+            📅 **Stale Issue Notice**
+
+            This issue has been automatically marked as stale because it has not had recent activity for **6 months**.
+
+            **⏰ This issue will be closed in 2 weeks** if no further activity occurs.
+
+            **To keep this issue open:**
+            - Comment on this issue
+            - Reference it in a commit or PR
+            - Add new information or updates
+
+            Thank you for your contributions to org-roam! 🙏
+
+          close-issue-message: |
+            🔒 **Issue Automatically Closed**
+
+            This issue was automatically closed due to **6 months of inactivity** followed by 2 weeks notice.
+
+            **To reopen:**
+            - If still relevant, comment below and we'll reopen
+            - Or create a new issue with updated information
+
+            If this issue is not reopened in 2 weeks, it will be locked.
+            
+            This helps keep our issue tracker focused and manageable.
+
+          stale-pr-message: |
+            📅 **Stale Pull Request Notice**
+
+            This pull request has been automatically marked as stale because it has not had recent activity for **6 months**.
+
+            **⏰ This PR will be closed in 2 weeks** if no further activity occurs.
+
+            **To keep this PR open:**
+            - Push new commits
+            - Comment with updates
+            - Rebase on latest main branch
+
+            Thank you for your contributions to org-roam! 🙏
+
+          close-pr-message: |
+            🔒 **Pull Request Automatically Closed**
+
+            This pull request was automatically closed due to **6 months of inactivity** followed by 2 weeks notice.
+
+          # Timing (6 months + 2 weeks)
+          days-before-stale: 182  # ~6 months
+          days-before-close: 14   # 2 weeks notice
+
+          # Performance
+          operations-per-run: 1000
+
+      # Show dry run summary
+      - name: Dry run summary
+        if: github.event.inputs.dry_run == 'true'
+        run: |
+          echo "🧪 DRY RUN COMPLETED"
+          echo "This was a dry run - no actual changes were made."
+          echo "Check the action logs above to see what would have happened."
+          echo ""
+          echo "To run for real:"
+          echo "1. Go to Actions tab"
+          echo "2. Click 'Run workflow'"
+          echo "3. Leave 'Dry run mode' unchecked"
+          echo "4. Click 'Run workflow'"

CHANGELOG.md

@@ -1,5 +1,10 @@
 # Changelog
 
+## 2.3.1 (2025-06-26)
+
+* (fix): Use correct type specifications to suppress warnings by @okomestudio in https://github.com/org-roam/org-roam/pull/2522
+* perf: suppress extra org features in the temp buffer by @dustinfarris in https://github.com/org-roam/org-roam/pull/2524
+
 ## 2.3.0 (2025-05-24)
 
 * (perf)node-read: filter before map to candidate by @russmatney in https://github.com/org-roam/org-roam/pull/2168

doc/org-roam.org

@@ -8,13 +8,13 @@
 #+texinfo_dir_category: Emacs
 #+texinfo_dir_title: Org-roam: (org-roam).
 #+texinfo_dir_desc: Roam Research for Emacs.
-#+subtitle: for version 2.3.0
+#+subtitle: for version 2.3.1
 
 #+options: H:4 num:3 toc:nil creator:t ':t
 #+property: header-args :eval never
 #+texinfo: @noindent
 
-This manual is for Org-roam version 2.3.0.
+This manual is for Org-roam version 2.3.1.
 
 #+BEGIN_QUOTE
 Copyright (C) 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>

doc/org-roam.texi

@@ -31,7 +31,7 @@ General Public License for more details.
 @finalout
 @titlepage
 @title Org-roam User Manual
-@subtitle for version 2.3.0
+@subtitle for version 2.3.1
 @author Jethro Kuan
 @page
 @vskip 0pt plus 1filll
@@ -44,7 +44,7 @@ General Public License for more details.
 
 @noindent
 
-This manual is for Org-roam version 2.3.0.
+This manual is for Org-roam version 2.3.1.
 
 @quotation
 Copyright (C) 2020-2025 Jethro Kuan <jethrokuan95@@gmail.com>

extensions/org-roam-dailies.el

@@ -7,7 +7,7 @@
 ;;      Leo Vivier <leo.vivier+dev@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

extensions/org-roam-export.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

extensions/org-roam-graph.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

extensions/org-roam-overlay.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

extensions/org-roam-protocol.el

@@ -4,7 +4,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (org "9.6") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-capture.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-compat.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-db.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -655,12 +655,14 @@ database, see `org-roam-db-sync' command."
       (add-hook 'kill-emacs-hook #'org-roam-db--close-all)
       (advice-add #'rename-file :after  #'org-roam-db-autosync--rename-file-a)
       (advice-add #'delete-file :before #'org-roam-db-autosync--delete-file-a)
+      (advice-add #'vc-delete-file :around #'org-roam-db-autosync--vc-delete-file-a)
       (org-roam-db-sync))
      (t
       (remove-hook 'find-file-hook  #'org-roam-db-autosync--setup-file-h)
       (remove-hook 'kill-emacs-hook #'org-roam-db--close-all)
       (advice-remove #'rename-file #'org-roam-db-autosync--rename-file-a)
       (advice-remove #'delete-file #'org-roam-db-autosync--delete-file-a)
+      (advice-remove #'vc-delete-file #'org-roam-db-autosync--vc-delete-file-a)
       (org-roam-db--close-all)
       ;; Disable local hooks for all org-roam buffers
       (dolist (buf (org-roam-buffer-list))
@@ -688,6 +690,17 @@ FILE is removed from the database."
              (org-roam-file-p file))
     (org-roam-db-clear-file (expand-file-name file))))
 
+(defun org-roam-db-autosync--vc-delete-file-a (fun file)
+  "Maintain cache consistency on file deletion by FUN.
+FILE is removed from the database."
+  (let ((org-roam-file-p (and (not (auto-save-file-name-p file))
+                              (not (backup-file-name-p file))
+                              (org-roam-file-p file))))
+    (apply fun `(,file))
+    (when (and org-roam-file-p
+               (not (file-exists-p file)))
+      (org-roam-db-clear-file (expand-file-name file)))))
+
 (defun org-roam-db-autosync--rename-file-a (old-file new-file-or-dir &rest _args)
   "Maintain cache consistency of file rename.
 OLD-FILE is cleared from the database, and NEW-FILE-OR-DIR is added."

org-roam-id.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-log.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-migrate.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-mode.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -658,17 +658,26 @@ This is the ROW within FILE."
        (end-of-line)
        (point)))))
 
-(defun org-roam-unlinked-references--rg-command (titles)
-  "Return the ripgrep command searching for TITLES."
+(defun org-roam-unlinked-references--rg-command (titles temp-file)
+  "Return the ripgrep command searching for TITLES using TEMP-FILE for pattern.
+This avoids shell escaping issues by writing the pattern to a file instead
+of passing it directly through the shell command line."
+  ;; Write pattern to temp file to avoid shell escaping issues with quotes,
+  ;; spaces, and other special characters in titles
+  (with-temp-file temp-file
+    (insert "\\[([^[]]++|(?R))*\\]"
+            (mapconcat (lambda (title)
+                         ;; Use regexp-quote instead of shell-quote-argument
+                         ;; since we're writing a regex pattern, not a shell argument
+                         (format "|(\\b%s\\b)" (regexp-quote title)))
+                       titles "")))
+
   (concat "rg --follow --only-matching --vimgrep --pcre2 --ignore-case "
           (mapconcat (lambda (glob) (concat "--glob " glob))
                      (org-roam--list-files-search-globs org-roam-file-extensions)
                      " ")
-          (format " '\\[([^[]]++|(?R))*\\]%s' "
-                  (mapconcat (lambda (title)
-                               (format "|(\\b%s\\b)" (shell-quote-argument title)))
-                             titles ""))
-          (shell-quote-argument org-roam-directory)))
+          " --file " (shell-quote-argument temp-file) " "
+          (shell-quote-argument (expand-file-name org-roam-directory))))
 
 (defun org-roam-unlinked-references-section (node)
   "The unlinked references section for NODE.
@@ -679,8 +688,12 @@ References from FILE are excluded."
                                 (shell-command-to-string "rg --pcre2-version"))))
     (let* ((titles (cons (org-roam-node-title node)
                          (org-roam-node-aliases node)))
-           (rg-command (org-roam-unlinked-references--rg-command titles))
-           (results (split-string (shell-command-to-string rg-command) "\n"))
+           ;; Create temp file for the regex pattern
+           (temp-file (make-temp-file "org-roam-rg-pattern-"))
+           (rg-command (org-roam-unlinked-references--rg-command titles temp-file)))
+      ;; Use unwind-protect to ensure temp file cleanup even if errors occur
+      (unwind-protect
+          (let* ((results (split-string (shell-command-to-string rg-command) "\n"))
                  f row col match)
             (magit-insert-section (unlinked-references)
               (magit-insert-heading "Unlinked References:")
@@ -705,7 +718,9 @@ References from FILE are excluded."
                                 (org-roam-fontify-like-in-org-mode
                                  (org-roam-unlinked-references-preview-line f row))
                                 "\n"))))))
-        (insert ?\n)))))
+              (insert ?\n)))
+        ;; Clean up temp file - this runs even if an error occurs above
+        (delete-file temp-file)))))
 
 (provide 'org-roam-mode)
 ;;; org-roam-mode.el ends here

org-roam-node.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -39,6 +39,16 @@
 ;;;; Completing-read
 (defcustom org-roam-node-display-template "${title}"
   "Configures display formatting for Org-roam node.
+
+If it is a function, it will be called to format a node.
+Its result is expected to be a string (potentially with
+embedded properties).
+
+If it is a string and it will be used as described in org-roam
+ (see org-roam-node-display-template)
+
+When it is a string, the following processing is done:
+
 Patterns of form \"${field-name:length}\" are interpolated based
 on the current node.
 
@@ -64,9 +74,23 @@ as many characters as possible and will be aligned accordingly.
 
 A closure can also be assigned to this variable in which case the
 closure is evaluated and the return value is used as the
-template. The closure must evaluate to a valid template string."
+template. The closure must evaluate to a valid template string.
+
+When org-roam-node-display-template is a function, the function is
+expected to return a string, potentially propertized. For example, the
+following function shows the title and base filename of the node:
+
+\(defun my--org-roam-format (node)
+  \"formats the node\"
+  (format \"%-40s %s\"
+          (if (org-roam-node-title node)
+              (propertize (org-roam-node-title node) 'face 'org-todo)
+            \"\")
+          (file-name-nondirectory (org-roam-node-file node))))
+
+\q(setq org-roam-node-display-template 'my--org-roam-format)"
   :group 'org-roam
-  :type  '(string function))
+  :type  '(choice string function))
 
 (defcustom org-roam-node-annotation-function #'org-roam-node-read--annotation
   "This function used to attach annotations for `org-roam-node-read'.
@@ -90,7 +114,7 @@ argument, an `org-roam-node', and return a string.
 If a string is provided, it is a template string expanded by
 `org-roam-node--format-entry'."
   :group 'org-roam
-  :type '(string function))
+  :type '(choice string function))
 
 (defcustom org-roam-node-template-prefixes
   '(("tags" . "#")
@@ -143,6 +167,10 @@ This path is relative to `org-roam-directory'."
   :group 'org-roam
   :type 'string)
 
+(defvar org-roam-link-type "roam"
+  "Link type for org-roam nodes.
+Replaced by `id' automatically when `org-roam-link-auto-replace' is non-nil.")
+
 (defvar org-roam-node-history nil
   "Minibuffer history of nodes.")
 
@@ -151,6 +179,11 @@ This path is relative to `org-roam-directory'."
 
 ;;; Definition
 (cl-defstruct (org-roam-node (:constructor org-roam-node-create)
+                             (:constructor org-roam-node-create-from-db
+                                           (title aliases                    ; 2
+                                                  id file file-title level todo     ; 5
+                                                  point priority scheduled deadline properties ;;5
+                                                  olp file-atime file-mtime tags refs)) ;;5
                              (:copier nil))
   "A heading or top level file with an assigned ID property."
   file file-title file-hash file-atime file-mtime
@@ -352,23 +385,27 @@ nodes."
 (defun org-roam-node-list ()
   "Return all nodes stored in the database as a list of `org-roam-node's."
   (let ((rows (org-roam-db-query
-               "SELECT
+               "
+SELECT
+  title,
+  aliases,
+
   id,
   file,
   filetitle,
   \"level\",
   todo,
+
   pos,
   priority ,
   scheduled ,
   deadline ,
-  title,
   properties ,
+
   olp,
   atime,
   mtime,
   '(' || group_concat(tags, ' ') || ')' as tags,
-  aliases,
   refs
 FROM
   (
@@ -417,32 +454,20 @@ FROM
     LEFT JOIN refs ON refs.node_id = nodes.id
     GROUP BY nodes.id, tags.tag, aliases.alias )
   GROUP BY id, tags )
-GROUP BY id")))
-    (cl-loop for row in rows
-             append (pcase-let* ((`(
-                                    ,id ,file ,file-title ,level ,todo ,pos ,priority ,scheduled ,deadline
-                                    ,title ,properties ,olp ,atime ,mtime ,tags ,aliases ,refs)
-                                  row)
-                                 (all-titles (cons title aliases)))
+GROUP BY id
+")))
+    (mapcan
+     (lambda (row)
+       (let (
+             (all-titles (cons (car row) (nth 1 row)))
+             )
          (mapcar (lambda (temp-title)
-                                (org-roam-node-create :id id
-                                                      :file file
-                                                      :file-title file-title
-                                                      :file-atime atime
-                                                      :file-mtime mtime
-                                                      :level level
-                                                      :point pos
-                                                      :todo todo
-                                                      :priority priority
-                                                      :scheduled scheduled
-                                                      :deadline deadline
-                                                      :title temp-title
-                                                      :aliases aliases
-                                                      :properties properties
-                                                      :olp olp
-                                                      :tags tags
-                                                      :refs refs))
-                              all-titles)))))
+                   (apply 'org-roam-node-create-from-db (cons temp-title (cdr row))))
+                 all-titles)
+         ))
+     rows)
+    )
+  )
 
 ;;;; Finders
 (defun org-roam-node-marker (node)
@@ -556,6 +581,25 @@ PROMPT is a string to show at the beginning of the mini-buffer, defaulting to \"
     (or (cdr (assoc node nodes))
         (org-roam-node-create :title node))))
 
+(defun org-roam--format-nodes-using-template (nodes)
+  "Formats NODES using org-roam template features.
+Uses org-roam--node-display-template."
+  (let  (
+         (wTemplate (org-roam-node--process-display-format org-roam-node-display-template))
+         )
+    (mapcar (lambda (node)
+              (org-roam-node-read--to-candidate node wTemplate)) nodes))
+  )
+
+(defun org-roam--format-nodes-using-function (nodes)
+  "Formats NODES using the function org-roam-node-display-template."
+  (mapcar (lambda (node)
+            (cons
+             (propertize (funcall org-roam-node-display-template node) 'node node)
+             node))
+          nodes)
+  )
+
 (defun org-roam-node-read--completions (&optional filter-fn sort-fn)
   "Return an alist for node completion.
 The car is the displayed title or alias for the node, and the cdr
@@ -565,15 +609,17 @@ and when nil is returned the node will be filtered out.
 SORT-FN is a function to sort nodes. See `org-roam-node-read-sort-by-file-mtime'
 for an example sort function.
 The displayed title is formatted according to `org-roam-node-display-template'."
-  (let* ((template (org-roam-node--process-display-format org-roam-node-display-template))
+  (let* (
          (nodes (org-roam-node-list))
          (nodes (if filter-fn
                     (cl-remove-if-not
                      (lambda (n) (funcall filter-fn n))
                      nodes)
                   nodes))
-         (nodes (mapcar (lambda (node)
-                          (org-roam-node-read--to-candidate node template)) nodes))
+         (nodes (if (functionp org-roam-node-display-template)
+                    (org-roam--format-nodes-using-function nodes)
+                  (org-roam--format-nodes-using-template nodes)))
+
          (sort-fn (or sort-fn
                       (when org-roam-node-default-sort
                         (intern (concat "org-roam-node-read-sort-by-"
@@ -726,7 +772,7 @@ The INFO, if provided, is passed to the underlying `org-roam-capture-'."
     (deactivate-mark)))
 
 ;;;;; [roam:] link
-(org-link-set-parameters "roam" :follow #'org-roam-link-follow-link)
+(org-link-set-parameters org-roam-link-type :follow #'org-roam-link-follow-link)
 (defun org-roam-link-follow-link (title-or-alias)
   "Navigate \"roam:\" link to find and open the node with TITLE-OR-ALIAS.
 Assumes that the cursor was put where the link is."
@@ -755,7 +801,7 @@ Assumes that the cursor was put where the link is."
              node)
         (goto-char (org-element-property :begin link))
         (when (and (org-in-regexp org-link-any-re 1)
-                   (string-equal type "roam")
+                   (string-equal type org-roam-link-type)
                    (setq node (save-match-data (org-roam-node-from-title-or-alias path))))
           (replace-match (org-link-make-string
                           (concat "id:" (org-roam-node-id node))
@@ -765,7 +811,7 @@ Assumes that the cursor was put where the link is."
   "Replace all \"roam:\" links in buffer with \"id:\" links."
   (interactive)
   (org-with-point-at 1
-    (while (re-search-forward org-link-bracket-re nil t)
+    (while (search-forward (concat "[[" org-roam-link-type ":") nil t)
       (org-roam-link-replace-at-point))))
 
 (add-hook 'org-roam-find-file-hook #'org-roam--replace-roam-links-on-save-h)

org-roam-utils.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -163,7 +163,8 @@ If FILE, set `default-directory' to FILE's directory and insert its contents."
   (let ((current-org-roam-directory (make-symbol "current-org-roam-directory")))
     `(let ((,current-org-roam-directory org-roam-directory))
        (with-temp-buffer
-         (let ((org-roam-directory ,current-org-roam-directory))
+         (let ((org-roam-directory ,current-org-roam-directory)
+               (org-inhibit-startup t))
            (delay-mode-hooks (org-mode))
            (when ,file
              (insert-file-contents ,file)

org-roam.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.3.0
+;; Version: 2.3.1
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

tests/test-org-roam-mode.el

@@ -30,9 +30,9 @@
     (setq org-roam-directory "/tmp/org roam"))
 
   (it "returns the correct rg command for unlinked references"
-    (expect (org-roam-unlinked-references--rg-command '("foo" "bar"))
+    (expect (org-roam-unlinked-references--rg-command '("foo" "bar") "/tmp/regex")
             :to-equal
-            "rg --follow --only-matching --vimgrep --pcre2 --ignore-case --glob \"*.org\" --glob \"*.org.gpg\" --glob \"*.org.age\" '\\[([^[]]++|(?R))*\\]|(\\bfoo\\b)|(\\bbar\\b)' /tmp/org\\ roam")))
+            "rg --follow --only-matching --vimgrep --pcre2 --ignore-case --glob \"*.org\" --glob \"*.org.gpg\" --glob \"*.org.age\" --file /tmp/regex /tmp/org\\ roam")))
 
 (provide 'test-org-roam-mode)