regenerate texi

PATH needs to be manually set on Windows. Previously, it was explicitly
mentioned that it was unnecessary. More recent experience is that it's necessary.

CHANGELOG.md

@@ -1,12 +1,8 @@
 # Changelog
 
-## 2.2.0
+## TBD
 ### Added
-- [#1806](https://github.com/org-roam/org-roam/pull/1806), [#2017](https://github.com/org-roam/org-roam/pull/2017) db: support caching and usage of Org 9.5's in-built citations
+- [#1806](https://github.com/org-roam/org-roam/pull/1806) db: support caching and usage of Org 9.5's in-built citations
-- [#1963](https://github.com/org-roam/org-roam/pull/1963) db: cache file title into files table
-- [#1977](https://github.com/org-roam/org-roam/pull/1977) db: support Org-ref v3 citations
-- [#1907](https://github.com/org-roam/org-roam/pull/1907), [#2009](https://github.com/org-roam/org-roam/pull/2009), [#2018](https://github.com/org-roam/org-roam/pull/2018) db: support sqlite3
-- [#2028](https://github.com/org-roam/org-roam/pull/2028) dailies: add `keys` argument to `org-roam-dailies-capture-today` and `org-roam-dailies--capture` functions to give the abilty to get into a capture buffer bypassing the selection screen
 
 ### Removed
 ### Changed
@@ -14,22 +10,12 @@
 - [#1809](https://github.com/org-roam/org-roam/pull/1809) capture: the mandatory `:if-new` property of each capture template is now renamed to `:target`
 - [#1829](https://github.com/org-roam/org-roam/pull/1829) perf: file sql updates are now wrapped in a transaction
 - [#1877](https://github.com/org-roam/org-roam/pull/1877) dailies: stop asking for time, only date
-- [#1949](https://github.com/org-roam/org-roam/pull/1949) db: check for property drawers are now case-insensitive
 
 ### Fixed
 - [#1798](https://github.com/org-roam/org-roam/pull/1798) org-roam-node-at-point: do not skip invisible headings
 - [#1807](https://github.com/org-roam/org-roam/pull/1807) capture: always trigger `:if-new` template for existing nodes
 - [#1813](https://github.com/org-roam/org-roam/pull/1813) db: prevent empty ROAM_ALIASES from crashing db updates
 - [#1816](https://github.com/org-roam/org-roam/pull/1816) db: prevent invalid ROAM_REFS from crashing db updates
-- [#1893](https://github.com/org-roam/org-roam/pull/1893), [#1896](https://github.com/org-roam/org-roam/pull/1896), [#1901](https://github.com/org-roam/org-roam/pull/1901), [#1895](https://github.com/org-roam/org-roam/pull/1895), [#1904](https://github.com/org-roam/org-roam/pull/1904) completions: various mini-buffer related completion fixes
-- [#1931](https://github.com/org-roam/org-roam/pull/1931) utils: org-roam-set-keyword now skips over all drawers
-- [#1947](https://github.com/org-roam/org-roam/pull/1947) db: links in ROAM_REFS are no longer considered as links
-- [#1948](https://github.com/org-roam/org-roam/pull/1948) completions: fix same-line completions
-- [#1953](https://github.com/org-roam/org-roam/pull/1953) db: refresh CATEGORY before writing to db
-- [#1946](https://github.com/org-roam/org-roam/pull/1946), [#1946](https://github.com/org-roam/org-roam/pull/1946), [#1958](https://github.com/org-roam/org-roam/pull/1958) various performance improvements
-- [#1980](https://github.com/org-roam/org-roam/pull/1980) utils: fix org-roam-with-file changing the minor-mode
-- [#2016](https://github.com/org-roam/org-roam/pull/2016) db: fix node caching being affected by agenda variables
-- [#2033](https://github.com/org-roam/org-roam/pull/2023) db: respect local variables during db parsing
 
 ## 2.1.0
 ### Added

doc/org-roam.org

@@ -1,20 +1,20 @@
 #+title: Org-roam User Manual
 #+author: Jethro Kuan
 #+email: jethrokuan95@gmail.com
-#+date: 2020-2022
+#+date: 2020-2021
 #+language: en
 
 #+texinfo_deffn: t
 #+texinfo_dir_category: Emacs
 #+texinfo_dir_title: Org-roam: (org-roam).
 #+texinfo_dir_desc: Roam Research for Emacs.
-#+subtitle: for version 2.2.0
+#+subtitle: for version 2.1.0
 
 #+options: H:4 num:3 toc:nil creator:t ':t
 #+property: header-args :eval never
 #+texinfo: @noindent
 
-This manual is for Org-roam version 2.2.0.
+This manual is for Org-roam version 2.1.0.
 
 #+BEGIN_QUOTE
 Copyright (C) 2020-2021 Jethro Kuan <jethrokuan95@gmail.com>
@@ -711,16 +711,6 @@ citation key:
 :END:
 #+end_src
 
-or
-
-#+begin_src org
-,* Probabilistic Robotics
-:PROPERTIES:
-:ID:       51b7b82c-bbb4-4822-875a-ed548cffda10
-:ROAM_REFS: [cite:@thrun2005probabilistic]
-:END:
-#+end_src
-
 for ~org-cite~, or:
 
 #+begin_src org
@@ -1361,9 +1351,6 @@ documents (PDF, EPUB etc.) within Org-mode.
 
 ** Bibliography
 
-Org 9.5 added native citation and bibliography functionality, called "org-cite",
-which org-roam supports.
-
 [[https://github.com/org-roam/org-roam-bibtex][org-roam-bibtex]] offers tight integration between [[https://github.com/jkitchin/org-ref][org-ref]], [[https://github.com/tmalsburg/helm-bibtex][helm-bibtex]] and
 ~org-roam~. This helps you manage your bibliographic notes under ~org-roam~.
 

doc/org-roam.texi

@@ -31,7 +31,7 @@ General Public License for more details.
 @finalout
 @titlepage
 @title Org-roam User Manual
-@subtitle for version 2.2.0
+@subtitle for version 2.1.0
 @author Jethro Kuan
 @page
 @vskip 0pt plus 1filll
@@ -44,7 +44,7 @@ General Public License for more details.
 
 @noindent
 
-This manual is for Org-roam version 2.2.0.
+This manual is for Org-roam version 2.1.0.
 
 @quotation
 Copyright (C) 2020-2021 Jethro Kuan <jethrokuan95@@gmail.com>
@@ -1066,7 +1066,7 @@ Remove a ref from the node at point.
 
 Since version 9.5, Org has first-class support for citations. Org-roam supports
 the caching of both these in-built citations (of form @code{[cite:@@key]}) and @uref{https://github.com/jkitchin/org-ref, org-ref}
-citations (of form cite:key).
+citations (of form @uref{key}).
 
 Org-roam attempts to load both the @code{org-ref} and @code{org-cite} package when
 indexing files, so no further setup from the user is required for citation
@@ -1091,16 +1091,6 @@ citation key:
 :END:
 @end example
 
-or
-
-@example
-* Probabilistic Robotics
-:PROPERTIES:
-:ID:       51b7b82c-bbb4-4822-875a-ed548cffda10
-:ROAM_REFS: [cite:@@thrun2005probabilistic]
-:END:
-@end example
-
 for @code{org-cite}, or:
 
 @example
@@ -1906,9 +1896,6 @@ documents (PDF, EPUB etc.) within Org-mode.
 @node Bibliography
 @section Bibliography
 
-Org 9.5 added native citation and bibliography functionality, called ``org-cite'',
-which org-roam supports.
-
 @uref{https://github.com/org-roam/org-roam-bibtex, org-roam-bibtex} offers tight integration between @uref{https://github.com/jkitchin/org-ref, org-ref}, @uref{https://github.com/tmalsburg/helm-bibtex, helm-bibtex} and
 @code{org-roam}. This helps you manage your bibliographic notes under @code{org-roam}.
 

extensions/org-roam-dailies.el

@@ -7,7 +7,7 @@
 ;;      Leo Vivier <leo.vivier+dev@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -130,14 +130,11 @@ See `org-roam-capture-templates' for the template documentation."
 ;;; Commands
 ;;;; Today
 ;;;###autoload
-(defun org-roam-dailies-capture-today (&optional goto keys)
+(defun org-roam-dailies-capture-today (&optional goto)
   "Create an entry in the daily-note for today.
-When GOTO is non-nil, go the note without creating an entry.
+When GOTO is non-nil, go the note without creating an entry."
-
-ELisp programs can set KEYS to a string associated with a template.
-In this case, interactive selection will be bypassed."
   (interactive "P")
-  (org-roam-dailies--capture (current-time) goto keys))
+  (org-roam-dailies--capture (current-time) goto))
 
 ;;;###autoload
 (defun org-roam-dailies-goto-today ()
@@ -303,15 +300,11 @@ Return (MONTH DAY YEAR) or nil if not an Org time-string."
 ;;; Capture implementation
 (add-to-list 'org-roam-capture--template-keywords :override-default-time)
 
-(defun org-roam-dailies--capture (time &optional goto keys)
+(defun org-roam-dailies--capture (time &optional goto)
   "Capture an entry in a daily-note for TIME, creating it if necessary.
-When GOTO is non-nil, go the note without creating an entry.
+When GOTO is non-nil, go the note without creating an entry."
-
-ELisp programs can set KEYS to a string associated with a template.
-In this case, interactive selection will be bypassed."
   (let ((org-roam-directory (expand-file-name org-roam-dailies-directory org-roam-directory)))
     (org-roam-capture- :goto (when goto '(4))
-                       :keys keys
                        :node (org-roam-node-create)
                        :templates org-roam-dailies-capture-templates
                        :props (list :override-default-time time)))

extensions/org-roam-graph.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (org "9.4") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

extensions/org-roam-overlay.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (org "9.4") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

extensions/org-roam-protocol.el

@@ -4,7 +4,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (org "9.4") (org-roam "2.1"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-capture.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-compat.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-db.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -54,7 +54,7 @@ a compiler. See https://nullprogram.com/blog/2014/02/06/."
                  (const sqlite3)
                  (symbol :tag "other")))
 
-(defcustom org-roam-db-location (locate-user-emacs-file "org-roam.db")
+(defcustom org-roam-db-location (expand-file-name "org-roam.db" user-emacs-directory)
   "The path to file where the Org-roam database is stored.
 
 It is the user's responsibility to set this correctly, especially
@@ -101,6 +101,12 @@ slow."
 ;;; Variables
 (defconst org-roam-db-version 18)
 
+;; TODO Rename this
+(defconst org-roam--sqlite-available-p
+  (with-demoted-errors "Org-roam initialization: %S"
+    (emacsql-sqlite-ensure-binary)
+    t))
+
 (defvar org-roam-db--connection (make-hash-table :test #'equal)
   "Database connection to Org-roam database.")
 
@@ -139,7 +145,6 @@ Performs a database upgrade when required."
     (let ((init-db (not (file-exists-p org-roam-db-location))))
       (make-directory (file-name-directory org-roam-db-location) t)
       (let ((conn (funcall (org-roam-db--conn-fn) org-roam-db-location)))
-        (emacsql conn [:pragma (= foreign_keys ON)])
         (when-let ((process (emacsql-process conn)))
           (set-process-query-on-exit-flag process nil))
         (puthash (expand-file-name (file-name-as-directory org-roam-directory))
@@ -238,6 +243,7 @@ The query is expected to be able to fail, in this situation, run HANDLER."
 
 (defun org-roam-db--init (db)
   "Initialize database DB with the correct schema and user version."
+  (emacsql db [:pragma (= foreign_keys ON)])
   (emacsql-with-transaction db
     (pcase-dolist (`(,table ,schema) org-roam-db--table-schemata)
       (emacsql db [:create-table $i1 $S2] table schema))
@@ -476,24 +482,9 @@ INFO is the org-element parsed buffer."
     (let (rows)
       (dolist (ref refs)
         (save-match-data
-          (cond (;; @citeKey
+          (cond ((string-prefix-p "@" ref)
-                 (string-prefix-p "@" ref)
                  (push (vector node-id (substring ref 1) "cite") rows))
-                (;; [cite:@citeKey]
+                ((string-match org-link-plain-re ref)
-                 (string-prefix-p "[cite:" ref)
-                 (condition-case nil
-                     (let ((cite-obj (org-cite-parse-objects ref)))
-                       (org-element-map cite-obj 'citation-reference
-                         (lambda (cite)
-                           (let ((key (org-element-property :key cite)))
-                             (push (vector node-id key "cite") rows)))))
-                   (error
-                    (lwarn '(org-roam) :warning
-                           "%s:%s\tInvalid cite %s, skipping..." (buffer-file-name) (point) ref))))
-                (;; https://google.com, cite:citeKey
-                 ;; Note: we use string-match here because it matches any link: e.g. [[cite:abc][abc]]
-                 ;; But this form of matching is loose, and can accept invalid links e.g. [[cite:abc]
-                 (string-match org-link-plain-re ref)
                  (let ((link-type (match-string 1 ref))
                        (path (match-string 2 ref)))
                    (if (and (boundp 'org-ref-cite-types)

org-roam-migrate.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-mode.el

@@ -1,11 +1,11 @@
 ;;; org-roam-mode.el --- Major mode for special Org-roam buffers -*- lexical-binding: t -*-
 
-;; Copyright © 2020-2022 Jethro Kuan <jethrokuan95@gmail.com>
+;; Copyright © 2020-2021 Jethro Kuan <jethrokuan95@gmail.com>
 
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-node.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

org-roam-utils.el

@@ -1,11 +1,11 @@
 ;;; org-roam-utils.el --- Utilities for Org-roam -*- lexical-binding: t; -*-
 
-;; Copyright © 2020-2022 Jethro Kuan <jethrokuan95@gmail.com>
+;; Copyright © 2020-2021 Jethro Kuan <jethrokuan95@gmail.com>
 
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -119,8 +119,7 @@ Kills the buffer if KEEP-BUF-P is nil, and FILE is not yet visited."
          (delay-mode-hooks
            (let ((org-inhibit-startup t)
                  (org-agenda-files nil))
-             (org-mode)
+             (org-mode))))
-             (hack-local-variables))))
        (setq res (progn ,@body))
        (unless (and new-buf (not ,keep-buf-p))
          (save-buffer)))

org-roam.el

@@ -5,7 +5,7 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Version: 2.2.0
+;; Version: 2.1.0
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (f "0.17.2") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.
@@ -279,8 +279,8 @@ E.g. (\".org\") => (\"*.org\" \"*.org.gpg\")"
 (defun org-roam--list-files-fd (executable dir)
   "Return all Org-roam files under DIR, using \"fd\", provided as EXECUTABLE."
   (let* ((globs (org-roam--list-files-search-globs org-roam-file-extensions))
-         (extensions (string-join (mapcar (lambda (glob) (concat "-e " (substring glob 2 -1))) globs) " "))
+         (extensions (string-join (mapcar (lambda (glob) (substring glob 2 -1)) globs) " -e "))
-         (command (string-join `(,executable "-L" "--type file" ,extensions "." ,dir) " ")))
+         (command (string-join `(,executable "-L" ,dir "--type file" ,extensions) " ")))
     (org-roam--shell-command-files command)))
 
 (defalias 'org-roam--list-files-fdfind #'org-roam--list-files-fd)