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It seems either Emacs' warning library and/or debugger relies on custom.el functionality at load time to properly function. If `custom-dont-initialize` is non-nil when a warning or error occurs, Emacs fails to fully load the `warning` or `backtrace` libraries, causing this error to obscure the true warning/error with: Error in delayed-warnings-hook (display-delayed-warnings): (void-variable warning-minimum-log-level)